Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3684 and Psyr_3685 are separated by 75 nucleotides Psyr_3685 and Psyr_3686 are separated by 14 nucleotides Psyr_3686 and Psyr_3687 are separated by 135 nucleotides
Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362
_3684
Psyr_3685: Psyr_3685 - Silent information regulator protein Sir2, at 4,371,438 to 4,372,181
_3685
Psyr_3686: Psyr_3686 - regulatory inactivation of DnaA Hda protein, at 4,372,196 to 4,372,981
_3686
Psyr_3687: Psyr_3687 - Protein of unknown function UPF0118, at 4,373,117 to 4,374,190
_3687
Position (kb) 4372
4373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4371.382 kb on + strand at 4371.382 kb on + strand at 4371.382 kb on + strand at 4371.386 kb on + strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.387 kb on - strand at 4371.400 kb on + strand at 4371.400 kb on + strand at 4371.409 kb on + strand at 4371.409 kb on + strand at 4371.410 kb on - strand at 4371.440 kb on - strand at 4371.450 kb on + strand at 4371.451 kb on - strand at 4371.586 kb on + strand, within Psyr_3685 at 4371.719 kb on + strand, within Psyr_3685 at 4371.720 kb on - strand, within Psyr_3685 at 4371.733 kb on - strand, within Psyr_3685 at 4371.931 kb on + strand, within Psyr_3685 at 4371.986 kb on - strand, within Psyr_3685 at 4371.986 kb on - strand, within Psyr_3685 at 4372.072 kb on + strand, within Psyr_3685 at 4372.072 kb on + strand, within Psyr_3685 at 4372.073 kb on - strand, within Psyr_3685 at 4372.094 kb on - strand, within Psyr_3685 at 4372.197 kb on + strand at 4372.198 kb on - strand at 4372.958 kb on - strand at 4373.118 kb on + strand at 4373.118 kb on + strand at 4373.145 kb on + strand at 4373.164 kb on - strand at 4373.164 kb on - strand at 4373.449 kb on + strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.532 kb on + strand, within Psyr_3687 at 4373.532 kb on + strand, within Psyr_3687 at 4373.574 kb on - strand, within Psyr_3687 at 4373.574 kb on - strand, within Psyr_3687 at 4373.692 kb on - strand, within Psyr_3687 at 4373.759 kb on - strand, within Psyr_3687 at 4373.776 kb on + strand, within Psyr_3687 at 4373.804 kb on - strand, within Psyr_3687
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 4,371,382 + +0.8 4,371,382 + -1.6 4,371,382 + -2.1 4,371,386 + -2.0 4,371,387 - -1.0 4,371,387 - -2.0 4,371,387 - -1.6 4,371,387 - +0.1 4,371,387 - -1.6 4,371,387 - +0.2 4,371,400 + +0.4 4,371,400 + +1.4 4,371,409 + -3.2 4,371,409 + +0.4 4,371,410 - -1.5 4,371,440 - -1.3 4,371,450 + +0.2 4,371,451 - -2.2 4,371,586 + Psyr_3685 0.20 -0.8 4,371,719 + Psyr_3685 0.38 -1.6 4,371,720 - Psyr_3685 0.38 -0.6 4,371,733 - Psyr_3685 0.40 -0.2 4,371,931 + Psyr_3685 0.66 -3.4 4,371,986 - Psyr_3685 0.74 +2.9 4,371,986 - Psyr_3685 0.74 +0.4 4,372,072 + Psyr_3685 0.85 -2.9 4,372,072 + Psyr_3685 0.85 -0.2 4,372,073 - Psyr_3685 0.85 -2.1 4,372,094 - Psyr_3685 0.88 +0.6 4,372,197 + -1.3 4,372,198 - +2.3 4,372,958 - +0.0 4,373,118 + -1.3 4,373,118 + +1.5 4,373,145 + +0.5 4,373,164 - +1.4 4,373,164 - +0.4 4,373,449 + Psyr_3687 0.31 -0.2 4,373,450 - Psyr_3687 0.31 +1.1 4,373,450 - Psyr_3687 0.31 +0.4 4,373,450 - Psyr_3687 0.31 +0.4 4,373,450 - Psyr_3687 0.31 -0.7 4,373,451 + Psyr_3687 0.31 +0.5 4,373,451 + Psyr_3687 0.31 +1.4 4,373,451 + Psyr_3687 0.31 +0.7 4,373,451 + Psyr_3687 0.31 -1.0 4,373,451 + Psyr_3687 0.31 -2.8 4,373,451 + Psyr_3687 0.31 -0.5 4,373,451 + Psyr_3687 0.31 -1.8 4,373,451 + Psyr_3687 0.31 -0.2 4,373,451 + Psyr_3687 0.31 +1.0 4,373,451 + Psyr_3687 0.31 -1.4 4,373,451 + Psyr_3687 0.31 -1.8 4,373,451 + Psyr_3687 0.31 -2.0 4,373,452 - Psyr_3687 0.31 -0.1 4,373,452 - Psyr_3687 0.31 -0.1 4,373,452 - Psyr_3687 0.31 +0.3 4,373,452 - Psyr_3687 0.31 +3.4 4,373,452 - Psyr_3687 0.31 +1.5 4,373,532 + Psyr_3687 0.39 +1.4 4,373,532 + Psyr_3687 0.39 -0.3 4,373,574 - Psyr_3687 0.43 +0.4 4,373,574 - Psyr_3687 0.43 +0.1 4,373,692 - Psyr_3687 0.54 +1.1 4,373,759 - Psyr_3687 0.60 +1.8 4,373,776 + Psyr_3687 0.61 +0.5 4,373,804 - Psyr_3687 0.64 +1.0
Or see this region's nucleotide sequence