Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3682

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3681 and Psyr_3682 are separated by 424 nucleotidesPsyr_3682 and Psyr_3683 are separated by 328 nucleotidesPsyr_3683 and Psyr_3684 are separated by 89 nucleotides Psyr_3681: Psyr_3681 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 4,367,306 to 4,367,917 _3681 Psyr_3682: Psyr_3682 - L-sorbosone dehydrogenase, at 4,368,342 to 4,369,670 _3682 Psyr_3683: Psyr_3683 - NLP/P60, at 4,369,999 to 4,370,544 _3683 Psyr_3684: Psyr_3684 - NLP/P60, at 4,370,634 to 4,371,362 _3684 Position (kb) 4368 4369 4370Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4367.429 kb on + strand, within Psyr_3681at 4367.429 kb on + strand, within Psyr_3681at 4367.429 kb on + strand, within Psyr_3681at 4367.429 kb on + strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4367.430 kb on - strand, within Psyr_3681at 4368.116 kb on + strandat 4368.117 kb on - strandat 4368.117 kb on - strandat 4368.302 kb on - strandat 4368.302 kb on - strandat 4368.308 kb on + strandat 4368.309 kb on - strandat 4368.328 kb on - strandat 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.597 kb on + strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.598 kb on - strand, within Psyr_3682at 4368.625 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.843 kb on + strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.844 kb on - strand, within Psyr_3682at 4368.879 kb on + strand, within Psyr_3682at 4368.880 kb on - strand, within Psyr_3682at 4368.999 kb on + strand, within Psyr_3682at 4368.999 kb on + strand, within Psyr_3682at 4368.999 kb on + strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.000 kb on - strand, within Psyr_3682at 4369.218 kb on + strand, within Psyr_3682at 4369.219 kb on - strand, within Psyr_3682at 4369.219 kb on - strand, within Psyr_3682at 4369.249 kb on - strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.266 kb on + strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.267 kb on - strand, within Psyr_3682at 4369.681 kb on - strandat 4369.776 kb on - strandat 4369.863 kb on + strandat 4369.863 kb on + strandat 4369.864 kb on - strandat 4369.918 kb on + strandat 4369.919 kb on - strandat 4370.000 kb on + strandat 4370.054 kb on + strand, within Psyr_3683at 4370.054 kb on + strand, within Psyr_3683at 4370.054 kb on + strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.055 kb on - strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.144 kb on + strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.145 kb on - strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.300 kb on + strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.306 kb on - strand, within Psyr_3683at 4370.573 kb on + strandat 4370.573 kb on + strandat 4370.601 kb on - strandat 4370.632 kb on - strandat 4370.632 kb on - strandat 4370.639 kb on + strandat 4370.666 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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4,367,429 + Psyr_3681 0.20 -0.1
4,367,429 + Psyr_3681 0.20 -1.2
4,367,429 + Psyr_3681 0.20 +0.2
4,367,429 + Psyr_3681 0.20 -1.5
4,367,430 - Psyr_3681 0.20 +2.9
4,367,430 - Psyr_3681 0.20 +2.4
4,367,430 - Psyr_3681 0.20 +1.5
4,368,116 + +1.8
4,368,117 - -1.1
4,368,117 - +1.0
4,368,302 - -0.6
4,368,302 - +0.1
4,368,308 + +2.2
4,368,309 - +0.8
4,368,328 - +1.0
4,368,597 + Psyr_3682 0.19 +1.9
4,368,597 + Psyr_3682 0.19 +1.7
4,368,597 + Psyr_3682 0.19 +0.8
4,368,597 + Psyr_3682 0.19 +0.5
4,368,598 - Psyr_3682 0.19 +1.1
4,368,598 - Psyr_3682 0.19 +0.9
4,368,598 - Psyr_3682 0.19 -1.0
4,368,598 - Psyr_3682 0.19 -1.1
4,368,598 - Psyr_3682 0.19 +0.2
4,368,598 - Psyr_3682 0.19 +1.6
4,368,598 - Psyr_3682 0.19 -1.8
4,368,598 - Psyr_3682 0.19 +0.4
4,368,598 - Psyr_3682 0.19 -0.2
4,368,625 + Psyr_3682 0.21 +0.4
4,368,843 + Psyr_3682 0.38 +0.4
4,368,843 + Psyr_3682 0.38 -1.8
4,368,843 + Psyr_3682 0.38 -1.3
4,368,843 + Psyr_3682 0.38 -1.2
4,368,843 + Psyr_3682 0.38 +0.4
4,368,843 + Psyr_3682 0.38 -0.8
4,368,843 + Psyr_3682 0.38 -0.2
4,368,843 + Psyr_3682 0.38 -0.2
4,368,843 + Psyr_3682 0.38 +2.3
4,368,843 + Psyr_3682 0.38 +0.6
4,368,843 + Psyr_3682 0.38 +0.4
4,368,844 - Psyr_3682 0.38 -0.2
4,368,844 - Psyr_3682 0.38 -1.9
4,368,844 - Psyr_3682 0.38 -2.7
4,368,844 - Psyr_3682 0.38 +1.2
4,368,844 - Psyr_3682 0.38 -0.2
4,368,844 - Psyr_3682 0.38 -0.4
4,368,844 - Psyr_3682 0.38 -0.8
4,368,844 - Psyr_3682 0.38 +1.2
4,368,844 - Psyr_3682 0.38 -1.6
4,368,844 - Psyr_3682 0.38 -0.7
4,368,844 - Psyr_3682 0.38 +0.2
4,368,879 + Psyr_3682 0.40 -1.0
4,368,880 - Psyr_3682 0.40 +0.8
4,368,999 + Psyr_3682 0.49 +0.8
4,368,999 + Psyr_3682 0.49 +0.8
4,368,999 + Psyr_3682 0.49 +1.7
4,369,000 - Psyr_3682 0.50 +0.2
4,369,000 - Psyr_3682 0.50 +1.7
4,369,000 - Psyr_3682 0.50 -1.3
4,369,218 + Psyr_3682 0.66 +0.4
4,369,219 - Psyr_3682 0.66 +1.4
4,369,219 - Psyr_3682 0.66 -0.2
4,369,249 - Psyr_3682 0.68 -0.2
4,369,266 + Psyr_3682 0.70 +1.4
4,369,266 + Psyr_3682 0.70 +0.6
4,369,266 + Psyr_3682 0.70 +1.4
4,369,267 - Psyr_3682 0.70 -0.5
4,369,267 - Psyr_3682 0.70 +1.5
4,369,267 - Psyr_3682 0.70 +1.4
4,369,267 - Psyr_3682 0.70 -1.2
4,369,681 - +2.9
4,369,776 - -0.6
4,369,863 + -0.2
4,369,863 + -0.1
4,369,864 - +1.4
4,369,918 + +0.0
4,369,919 - +1.2
4,370,000 + -0.1
4,370,054 + Psyr_3683 0.10 -1.3
4,370,054 + Psyr_3683 0.10 -1.0
4,370,054 + Psyr_3683 0.10 -2.0
4,370,055 - Psyr_3683 0.10 +1.0
4,370,055 - Psyr_3683 0.10 -1.8
4,370,144 + Psyr_3683 0.27 -0.2
4,370,144 + Psyr_3683 0.27 -2.6
4,370,144 + Psyr_3683 0.27 +0.4
4,370,144 + Psyr_3683 0.27 -0.9
4,370,144 + Psyr_3683 0.27 +0.4
4,370,144 + Psyr_3683 0.27 -0.3
4,370,144 + Psyr_3683 0.27 -1.0
4,370,144 + Psyr_3683 0.27 -0.0
4,370,145 - Psyr_3683 0.27 -0.3
4,370,145 - Psyr_3683 0.27 -0.8
4,370,145 - Psyr_3683 0.27 +0.5
4,370,145 - Psyr_3683 0.27 +0.5
4,370,145 - Psyr_3683 0.27 -0.2
4,370,145 - Psyr_3683 0.27 +0.0
4,370,145 - Psyr_3683 0.27 +3.4
4,370,145 - Psyr_3683 0.27 -0.4
4,370,145 - Psyr_3683 0.27 -0.8
4,370,145 - Psyr_3683 0.27 +1.2
4,370,145 - Psyr_3683 0.27 -1.0
4,370,145 - Psyr_3683 0.27 -0.3
4,370,145 - Psyr_3683 0.27 +0.5
4,370,145 - Psyr_3683 0.27 -1.5
4,370,300 + Psyr_3683 0.55 +0.4
4,370,300 + Psyr_3683 0.55 -2.2
4,370,306 - Psyr_3683 0.56 +0.1
4,370,306 - Psyr_3683 0.56 +0.2
4,370,306 - Psyr_3683 0.56 -0.2
4,370,306 - Psyr_3683 0.56 +0.8
4,370,306 - Psyr_3683 0.56 +1.0
4,370,306 - Psyr_3683 0.56 -1.5
4,370,573 + -1.2
4,370,573 + +0.4
4,370,601 - +0.7
4,370,632 - +1.6
4,370,632 - +0.0
4,370,639 + -0.3
4,370,666 + +0.5

Or see this region's nucleotide sequence