Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3630 and Psyr_3631 are separated by 3 nucleotides Psyr_3631 and Psyr_3632 are separated by 123 nucleotides Psyr_3632 and Psyr_3633 are separated by 72 nucleotides Psyr_3633 and Psyr_3634 are separated by 479 nucleotides
Psyr_3630: Psyr_3630 - conserved hypothetical protein, at 4,312,730 to 4,313,128
_3630
Psyr_3631: Psyr_3631 - GreA/GreB family elongation factor, at 4,313,132 to 4,313,614
_3631
Psyr_3632: Psyr_3632 - conserved hypothetical protein, at 4,313,738 to 4,313,944
_3632
Psyr_3633: Psyr_3633 - threonine/serine transporter, at 4,314,017 to 4,315,294
_3633
Psyr_3634: Psyr_3634 - transcriptional regulator, TetR family, at 4,315,774 to 4,316,343
_3634
Position (kb) 4314
4315
4316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4313.117 kb on + strand at 4313.118 kb on - strand at 4313.148 kb on + strand at 4313.148 kb on + strand at 4313.149 kb on - strand at 4313.149 kb on - strand at 4313.149 kb on - strand at 4313.149 kb on - strand at 4313.149 kb on - strand at 4313.258 kb on + strand, within Psyr_3631 at 4313.258 kb on + strand, within Psyr_3631 at 4313.259 kb on - strand, within Psyr_3631 at 4313.259 kb on - strand, within Psyr_3631 at 4313.259 kb on - strand, within Psyr_3631 at 4313.268 kb on + strand, within Psyr_3631 at 4313.285 kb on + strand, within Psyr_3631 at 4313.342 kb on + strand, within Psyr_3631 at 4313.435 kb on + strand, within Psyr_3631 at 4313.436 kb on - strand, within Psyr_3631 at 4313.436 kb on - strand, within Psyr_3631 at 4313.436 kb on - strand, within Psyr_3631 at 4313.436 kb on - strand, within Psyr_3631 at 4313.436 kb on - strand, within Psyr_3631 at 4313.436 kb on - strand, within Psyr_3631 at 4313.559 kb on + strand, within Psyr_3631 at 4313.718 kb on - strand at 4313.813 kb on + strand, within Psyr_3632 at 4313.813 kb on + strand, within Psyr_3632 at 4313.814 kb on - strand, within Psyr_3632 at 4313.879 kb on + strand, within Psyr_3632 at 4313.879 kb on + strand, within Psyr_3632 at 4313.880 kb on - strand, within Psyr_3632 at 4313.880 kb on - strand, within Psyr_3632 at 4313.880 kb on - strand, within Psyr_3632 at 4313.880 kb on - strand, within Psyr_3632 at 4313.886 kb on - strand, within Psyr_3632 at 4313.886 kb on - strand, within Psyr_3632 at 4313.891 kb on + strand, within Psyr_3632 at 4313.891 kb on + strand, within Psyr_3632 at 4313.892 kb on - strand, within Psyr_3632 at 4313.925 kb on - strand at 4314.078 kb on + strand at 4314.078 kb on + strand at 4314.078 kb on + strand at 4314.078 kb on + strand at 4314.078 kb on + strand at 4314.079 kb on - strand at 4314.079 kb on - strand at 4314.099 kb on + strand at 4314.100 kb on - strand at 4314.100 kb on - strand at 4314.103 kb on + strand at 4314.103 kb on + strand at 4314.103 kb on + strand at 4314.103 kb on + strand at 4314.104 kb on - strand at 4314.104 kb on - strand at 4314.104 kb on - strand at 4314.104 kb on - strand at 4314.104 kb on - strand at 4314.104 kb on - strand at 4314.104 kb on - strand at 4314.116 kb on + strand at 4314.116 kb on + strand at 4314.132 kb on + strand at 4314.133 kb on - strand at 4314.133 kb on - strand at 4314.333 kb on + strand, within Psyr_3633 at 4314.333 kb on + strand, within Psyr_3633 at 4314.333 kb on + strand, within Psyr_3633 at 4314.333 kb on + strand, within Psyr_3633 at 4314.333 kb on + strand, within Psyr_3633 at 4314.334 kb on - strand, within Psyr_3633 at 4314.334 kb on - strand, within Psyr_3633 at 4314.423 kb on + strand, within Psyr_3633 at 4314.424 kb on - strand, within Psyr_3633 at 4314.424 kb on - strand, within Psyr_3633 at 4314.700 kb on + strand, within Psyr_3633 at 4314.743 kb on + strand, within Psyr_3633 at 4314.743 kb on + strand, within Psyr_3633 at 4314.743 kb on + strand, within Psyr_3633 at 4314.759 kb on - strand, within Psyr_3633 at 4314.759 kb on - strand, within Psyr_3633 at 4314.939 kb on + strand, within Psyr_3633 at 4314.939 kb on + strand, within Psyr_3633 at 4314.973 kb on - strand, within Psyr_3633 at 4314.973 kb on - strand, within Psyr_3633 at 4314.973 kb on - strand, within Psyr_3633 at 4315.086 kb on + strand, within Psyr_3633 at 4315.222 kb on + strand at 4315.223 kb on - strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.253 kb on + strand at 4315.254 kb on - strand at 4315.279 kb on + strand at 4315.429 kb on - strand at 4315.471 kb on - strand at 4315.543 kb on + strand at 4315.543 kb on + strand at 4315.682 kb on + strand at 4315.682 kb on + strand at 4315.682 kb on + strand at 4315.724 kb on + strand at 4315.725 kb on - strand at 4315.725 kb on - strand at 4315.732 kb on + strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.733 kb on - strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.734 kb on + strand at 4315.735 kb on - strand at 4315.735 kb on - strand at 4315.735 kb on - strand at 4315.794 kb on + strand at 4315.795 kb on - strand at 4315.915 kb on + strand, within Psyr_3634 at 4315.916 kb on - strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.979 kb on + strand, within Psyr_3634 at 4315.980 kb on - strand, within Psyr_3634 at 4315.980 kb on - strand, within Psyr_3634 at 4316.041 kb on + strand, within Psyr_3634 at 4316.041 kb on + strand, within Psyr_3634 at 4316.042 kb on - strand, within Psyr_3634 at 4316.042 kb on - strand, within Psyr_3634 at 4316.045 kb on + strand, within Psyr_3634 at 4316.046 kb on - strand, within Psyr_3634 at 4316.094 kb on + strand, within Psyr_3634 at 4316.094 kb on + strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.095 kb on - strand, within Psyr_3634 at 4316.234 kb on + strand, within Psyr_3634 at 4316.234 kb on + strand, within Psyr_3634 at 4316.234 kb on + strand, within Psyr_3634
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 4,313,117 + +0.3 4,313,118 - +0.4 4,313,148 + -2.3 4,313,148 + +2.4 4,313,149 - -1.6 4,313,149 - -0.6 4,313,149 - -0.9 4,313,149 - +2.4 4,313,149 - +0.0 4,313,258 + Psyr_3631 0.26 +1.1 4,313,258 + Psyr_3631 0.26 +2.4 4,313,259 - Psyr_3631 0.26 +2.4 4,313,259 - Psyr_3631 0.26 +0.4 4,313,259 - Psyr_3631 0.26 +1.2 4,313,268 + Psyr_3631 0.28 -0.1 4,313,285 + Psyr_3631 0.32 +0.4 4,313,342 + Psyr_3631 0.43 +0.2 4,313,435 + Psyr_3631 0.63 -0.6 4,313,436 - Psyr_3631 0.63 +0.3 4,313,436 - Psyr_3631 0.63 +0.4 4,313,436 - Psyr_3631 0.63 -1.8 4,313,436 - Psyr_3631 0.63 +3.0 4,313,436 - Psyr_3631 0.63 -1.2 4,313,436 - Psyr_3631 0.63 -2.9 4,313,559 + Psyr_3631 0.88 -1.0 4,313,718 - +0.4 4,313,813 + Psyr_3632 0.36 +1.0 4,313,813 + Psyr_3632 0.36 -1.7 4,313,814 - Psyr_3632 0.37 +0.2 4,313,879 + Psyr_3632 0.68 -0.4 4,313,879 + Psyr_3632 0.68 +0.8 4,313,880 - Psyr_3632 0.69 -0.9 4,313,880 - Psyr_3632 0.69 -0.6 4,313,880 - Psyr_3632 0.69 +0.4 4,313,880 - Psyr_3632 0.69 -3.3 4,313,886 - Psyr_3632 0.71 +2.0 4,313,886 - Psyr_3632 0.71 +0.6 4,313,891 + Psyr_3632 0.74 +1.4 4,313,891 + Psyr_3632 0.74 +0.2 4,313,892 - Psyr_3632 0.74 -1.3 4,313,925 - -1.7 4,314,078 + -2.5 4,314,078 + +1.4 4,314,078 + -0.6 4,314,078 + -0.9 4,314,078 + -0.0 4,314,079 - +0.1 4,314,079 - -1.9 4,314,099 + +0.2 4,314,100 - +1.0 4,314,100 - -0.6 4,314,103 + -0.3 4,314,103 + +1.4 4,314,103 + -0.1 4,314,103 + +1.4 4,314,104 - +0.7 4,314,104 - +0.2 4,314,104 - +0.8 4,314,104 - -0.0 4,314,104 - +1.5 4,314,104 - -0.2 4,314,104 - +0.7 4,314,116 + +0.2 4,314,116 + -0.4 4,314,132 + +0.5 4,314,133 - +0.3 4,314,133 - -1.2 4,314,333 + Psyr_3633 0.25 +0.5 4,314,333 + Psyr_3633 0.25 +1.4 4,314,333 + Psyr_3633 0.25 -0.5 4,314,333 + Psyr_3633 0.25 -0.2 4,314,333 + Psyr_3633 0.25 +0.2 4,314,334 - Psyr_3633 0.25 -1.0 4,314,334 - Psyr_3633 0.25 -0.5 4,314,423 + Psyr_3633 0.32 -0.0 4,314,424 - Psyr_3633 0.32 +0.5 4,314,424 - Psyr_3633 0.32 +1.1 4,314,700 + Psyr_3633 0.53 +0.2 4,314,743 + Psyr_3633 0.57 -0.8 4,314,743 + Psyr_3633 0.57 +0.9 4,314,743 + Psyr_3633 0.57 -0.4 4,314,759 - Psyr_3633 0.58 -1.3 4,314,759 - Psyr_3633 0.58 +1.4 4,314,939 + Psyr_3633 0.72 +0.9 4,314,939 + Psyr_3633 0.72 +1.1 4,314,973 - Psyr_3633 0.75 -1.6 4,314,973 - Psyr_3633 0.75 +0.1 4,314,973 - Psyr_3633 0.75 -2.6 4,315,086 + Psyr_3633 0.84 +0.1 4,315,222 + +1.4 4,315,223 - -1.0 4,315,253 + -1.0 4,315,253 + +1.1 4,315,253 + +0.6 4,315,253 + -2.1 4,315,254 - -0.5 4,315,279 + -1.9 4,315,429 - -1.2 4,315,471 - -3.3 4,315,543 + -0.4 4,315,543 + -0.6 4,315,682 + +0.6 4,315,682 + -0.2 4,315,682 + +0.9 4,315,724 + +1.0 4,315,725 - +0.1 4,315,725 - -1.2 4,315,732 + +0.7 4,315,733 - -1.0 4,315,733 - +0.3 4,315,733 - +0.4 4,315,733 - -0.1 4,315,733 - -0.4 4,315,733 - +0.4 4,315,733 - -2.0 4,315,733 - -2.3 4,315,733 - -0.2 4,315,734 + +2.7 4,315,734 + +1.1 4,315,734 + -0.7 4,315,734 + +1.0 4,315,734 + -0.2 4,315,734 + -0.2 4,315,735 - -0.7 4,315,735 - -0.1 4,315,735 - +0.8 4,315,794 + +0.0 4,315,795 - +0.4 4,315,915 + Psyr_3634 0.25 +1.5 4,315,916 - Psyr_3634 0.25 +0.4 4,315,979 + Psyr_3634 0.36 -0.4 4,315,979 + Psyr_3634 0.36 +0.5 4,315,980 - Psyr_3634 0.36 -0.1 4,315,980 - Psyr_3634 0.36 +0.1 4,316,041 + Psyr_3634 0.47 +0.9 4,316,041 + Psyr_3634 0.47 +1.2 4,316,042 - Psyr_3634 0.47 +0.5 4,316,042 - Psyr_3634 0.47 +0.7 4,316,045 + Psyr_3634 0.48 +2.1 4,316,046 - Psyr_3634 0.48 -1.8 4,316,094 + Psyr_3634 0.56 +1.4 4,316,094 + Psyr_3634 0.56 -0.7 4,316,095 - Psyr_3634 0.56 -1.6 4,316,095 - Psyr_3634 0.56 +0.1 4,316,095 - Psyr_3634 0.56 -3.3 4,316,095 - Psyr_3634 0.56 +0.3 4,316,095 - Psyr_3634 0.56 +0.7 4,316,234 + Psyr_3634 0.81 -0.0 4,316,234 + Psyr_3634 0.81 +2.0 4,316,234 + Psyr_3634 0.81 +0.5
Or see this region's nucleotide sequence