Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3600 and Psyr_3601 are separated by 138 nucleotides Psyr_3601 and Psyr_3602 overlap by 4 nucleotides
Psyr_3600: Psyr_3600 - transcriptional regulator, LysR family, at 4,281,346 to 4,282,314
_3600
Psyr_3601: Psyr_3601 - conserved hypothetical protein, at 4,282,453 to 4,283,064
_3601
Psyr_3602: Psyr_3602 - Rhodanese-like protein, at 4,283,061 to 4,284,644
_3602
Position (kb) 4282
4283
4284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4281.672 kb on + strand, within Psyr_3600 at 4281.692 kb on + strand, within Psyr_3600 at 4281.796 kb on + strand, within Psyr_3600 at 4281.796 kb on + strand, within Psyr_3600 at 4282.058 kb on + strand, within Psyr_3600 at 4282.295 kb on + strand at 4282.296 kb on - strand at 4282.329 kb on + strand at 4282.329 kb on + strand at 4282.330 kb on - strand at 4282.372 kb on + strand at 4282.498 kb on - strand at 4282.969 kb on + strand, within Psyr_3601 at 4282.969 kb on + strand, within Psyr_3601 at 4282.969 kb on + strand, within Psyr_3601 at 4282.969 kb on + strand, within Psyr_3601 at 4282.970 kb on - strand, within Psyr_3601 at 4283.134 kb on + strand at 4283.316 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.904 kb on + strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.905 kb on - strand, within Psyr_3602 at 4283.917 kb on + strand, within Psyr_3602 at 4283.917 kb on + strand, within Psyr_3602 at 4283.917 kb on + strand, within Psyr_3602 at 4283.917 kb on + strand, within Psyr_3602 at 4283.917 kb on + strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602 at 4283.918 kb on - strand, within Psyr_3602
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 4,281,672 + Psyr_3600 0.34 -1.2 4,281,692 + Psyr_3600 0.36 +2.4 4,281,796 + Psyr_3600 0.46 +1.4 4,281,796 + Psyr_3600 0.46 +0.6 4,282,058 + Psyr_3600 0.73 -0.2 4,282,295 + +0.4 4,282,296 - +0.5 4,282,329 + -2.5 4,282,329 + +0.8 4,282,330 - -2.4 4,282,372 + -1.8 4,282,498 - -0.4 4,282,969 + Psyr_3601 0.84 +0.4 4,282,969 + Psyr_3601 0.84 +1.0 4,282,969 + Psyr_3601 0.84 -2.3 4,282,969 + Psyr_3601 0.84 -1.4 4,282,970 - Psyr_3601 0.84 -0.6 4,283,134 + +0.8 4,283,316 + Psyr_3602 0.16 +1.7 4,283,904 + Psyr_3602 0.53 +1.4 4,283,904 + Psyr_3602 0.53 +2.1 4,283,904 + Psyr_3602 0.53 +0.8 4,283,904 + Psyr_3602 0.53 +1.2 4,283,904 + Psyr_3602 0.53 -0.0 4,283,904 + Psyr_3602 0.53 -2.3 4,283,904 + Psyr_3602 0.53 -0.4 4,283,904 + Psyr_3602 0.53 -0.0 4,283,904 + Psyr_3602 0.53 +0.8 4,283,905 - Psyr_3602 0.53 +2.0 4,283,905 - Psyr_3602 0.53 +2.2 4,283,905 - Psyr_3602 0.53 +0.4 4,283,905 - Psyr_3602 0.53 +1.1 4,283,905 - Psyr_3602 0.53 -0.4 4,283,917 + Psyr_3602 0.54 -0.0 4,283,917 + Psyr_3602 0.54 +0.6 4,283,917 + Psyr_3602 0.54 -1.0 4,283,917 + Psyr_3602 0.54 +1.1 4,283,917 + Psyr_3602 0.54 -1.0 4,283,918 - Psyr_3602 0.54 -0.4 4,283,918 - Psyr_3602 0.54 -0.1 4,283,918 - Psyr_3602 0.54 +1.0 4,283,918 - Psyr_3602 0.54 +0.7
Or see this region's nucleotide sequence