Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2690 and Psyr_2691 overlap by 4 nucleotides Psyr_2691 and Psyr_2692 overlap by 1 nucleotides Psyr_2692 and Psyr_2693 overlap by 4 nucleotides
Psyr_2690: Psyr_2690 - Glycosyl transferase, family 2, at 3,266,168 to 3,267,181
_2690
Psyr_2691: Psyr_2691 - Formyl transferase, N-terminal:Formyl transferase, C-terminal, at 3,267,178 to 3,269,172
_2691
Psyr_2692: Psyr_2692 - Polysaccharide deacetylase, at 3,269,172 to 3,270,053
_2692
Psyr_2693: Psyr_2693 - Glycosyl transferase, family 39, at 3,270,050 to 3,271,702
_2693
Position (kb) 3267
3268
3269
3270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3266.213 kb on + strand at 3266.214 kb on - strand at 3266.396 kb on + strand, within Psyr_2690 at 3266.397 kb on - strand, within Psyr_2690 at 3266.798 kb on + strand, within Psyr_2690 at 3266.799 kb on - strand, within Psyr_2690 at 3267.059 kb on + strand, within Psyr_2690 at 3267.060 kb on - strand, within Psyr_2690 at 3267.060 kb on - strand, within Psyr_2690 at 3267.150 kb on + strand at 3267.158 kb on + strand at 3267.159 kb on - strand at 3267.159 kb on - strand at 3267.159 kb on - strand at 3267.159 kb on - strand at 3267.160 kb on + strand at 3267.160 kb on + strand at 3267.161 kb on - strand at 3267.161 kb on - strand at 3267.161 kb on - strand at 3267.186 kb on + strand at 3267.186 kb on + strand at 3267.254 kb on - strand at 3267.430 kb on + strand, within Psyr_2691 at 3267.430 kb on + strand, within Psyr_2691 at 3267.430 kb on + strand, within Psyr_2691 at 3267.431 kb on - strand, within Psyr_2691 at 3267.431 kb on - strand, within Psyr_2691 at 3267.444 kb on - strand, within Psyr_2691 at 3267.776 kb on - strand, within Psyr_2691 at 3267.838 kb on + strand, within Psyr_2691 at 3267.839 kb on - strand, within Psyr_2691 at 3267.839 kb on - strand, within Psyr_2691 at 3267.839 kb on - strand, within Psyr_2691 at 3267.840 kb on + strand, within Psyr_2691 at 3268.045 kb on + strand, within Psyr_2691 at 3268.046 kb on - strand, within Psyr_2691 at 3268.046 kb on - strand, within Psyr_2691 at 3268.046 kb on - strand, within Psyr_2691 at 3268.381 kb on + strand, within Psyr_2691 at 3268.381 kb on + strand, within Psyr_2691 at 3268.456 kb on + strand, within Psyr_2691 at 3268.457 kb on - strand, within Psyr_2691 at 3268.457 kb on - strand, within Psyr_2691 at 3268.457 kb on - strand, within Psyr_2691 at 3268.496 kb on - strand, within Psyr_2691 at 3268.576 kb on + strand, within Psyr_2691 at 3269.011 kb on + strand at 3269.011 kb on + strand at 3269.012 kb on - strand at 3269.012 kb on - strand at 3269.376 kb on + strand, within Psyr_2692 at 3269.376 kb on + strand, within Psyr_2692 at 3269.557 kb on + strand, within Psyr_2692 at 3269.558 kb on - strand, within Psyr_2692 at 3269.780 kb on - strand, within Psyr_2692 at 3269.780 kb on - strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.817 kb on + strand, within Psyr_2692 at 3269.857 kb on - strand, within Psyr_2692 at 3269.857 kb on - strand, within Psyr_2692 at 3269.914 kb on + strand, within Psyr_2692 at 3270.055 kb on - strand at 3270.055 kb on - strand at 3270.107 kb on + strand at 3270.108 kb on - strand at 3270.108 kb on - strand at 3270.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 3,266,213 + +0.1 3,266,214 - +0.4 3,266,396 + Psyr_2690 0.22 +0.4 3,266,397 - Psyr_2690 0.23 -0.5 3,266,798 + Psyr_2690 0.62 +0.1 3,266,799 - Psyr_2690 0.62 +2.0 3,267,059 + Psyr_2690 0.88 -0.1 3,267,060 - Psyr_2690 0.88 -1.0 3,267,060 - Psyr_2690 0.88 -2.6 3,267,150 + -0.4 3,267,158 + +0.8 3,267,159 - +2.1 3,267,159 - +0.4 3,267,159 - -1.8 3,267,159 - +0.9 3,267,160 + -2.6 3,267,160 + +1.6 3,267,161 - -1.2 3,267,161 - +1.2 3,267,161 - -2.8 3,267,186 + -0.8 3,267,186 + -0.2 3,267,254 - +0.4 3,267,430 + Psyr_2691 0.13 -0.8 3,267,430 + Psyr_2691 0.13 +0.7 3,267,430 + Psyr_2691 0.13 +1.2 3,267,431 - Psyr_2691 0.13 -1.9 3,267,431 - Psyr_2691 0.13 +0.9 3,267,444 - Psyr_2691 0.13 -1.2 3,267,776 - Psyr_2691 0.30 -2.1 3,267,838 + Psyr_2691 0.33 +1.6 3,267,839 - Psyr_2691 0.33 +3.1 3,267,839 - Psyr_2691 0.33 +2.0 3,267,839 - Psyr_2691 0.33 -0.2 3,267,840 + Psyr_2691 0.33 +0.2 3,268,045 + Psyr_2691 0.43 -1.2 3,268,046 - Psyr_2691 0.44 +0.4 3,268,046 - Psyr_2691 0.44 -1.0 3,268,046 - Psyr_2691 0.44 -0.7 3,268,381 + Psyr_2691 0.60 +0.2 3,268,381 + Psyr_2691 0.60 -1.4 3,268,456 + Psyr_2691 0.64 +0.6 3,268,457 - Psyr_2691 0.64 +0.4 3,268,457 - Psyr_2691 0.64 -0.3 3,268,457 - Psyr_2691 0.64 +1.4 3,268,496 - Psyr_2691 0.66 +0.1 3,268,576 + Psyr_2691 0.70 +1.6 3,269,011 + +1.4 3,269,011 + -1.2 3,269,012 - +1.1 3,269,012 - -0.4 3,269,376 + Psyr_2692 0.23 -0.3 3,269,376 + Psyr_2692 0.23 -0.5 3,269,557 + Psyr_2692 0.44 +1.9 3,269,558 - Psyr_2692 0.44 +0.3 3,269,780 - Psyr_2692 0.69 -1.3 3,269,780 - Psyr_2692 0.69 +2.0 3,269,817 + Psyr_2692 0.73 +1.1 3,269,817 + Psyr_2692 0.73 -0.2 3,269,817 + Psyr_2692 0.73 +0.6 3,269,817 + Psyr_2692 0.73 +1.0 3,269,817 + Psyr_2692 0.73 -0.9 3,269,857 - Psyr_2692 0.78 -1.0 3,269,857 - Psyr_2692 0.78 +1.2 3,269,914 + Psyr_2692 0.84 +2.6 3,270,055 - +1.3 3,270,055 - +0.9 3,270,107 + -0.0 3,270,108 - +0.6 3,270,108 - -2.1 3,270,159 - -0.0
Or see this region's nucleotide sequence