Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2235

Experiment: KB with Carbenicillin 3.1 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Carbenicillin 3.1 ug/ml
2,596,224	+		Psyr_2232	0.89	+0.5
2,596,224	+		Psyr_2232	0.89	+1.5
2,596,225	-		Psyr_2232	0.89	-0.6
2,596,339	+				-0.1
2,596,340	-				-1.8
2,596,377	-				-2.8
2,596,394	+				-2.1
2,596,632	-				-1.8
2,597,024	+				+0.5
2,597,024	+				-0.5
2,597,024	+				+0.0
2,597,025	-				+1.2
2,597,025	-				+0.5
2,597,025	-				+2.1
2,597,025	-				-0.1
2,597,025	-				-0.3
2,597,025	-				+0.8
2,597,062	+				+0.5
2,597,062	+				+1.4
2,597,063	-				-0.8
2,597,064	+				-1.8
2,597,065	-				-1.8
2,597,124	+				-0.4
2,597,124	+				+0.5
2,597,124	+				+1.5
2,597,124	+				+0.2
2,597,125	-				-1.1
2,597,125	-				-0.3
2,597,370	+		Psyr_2235	0.18	-1.0
2,597,370	+		Psyr_2235	0.18	-2.0
2,597,370	+		Psyr_2235	0.18	+0.0
2,597,370	+		Psyr_2235	0.18	-0.8
2,597,371	-		Psyr_2235	0.18	+1.0
2,597,371	-		Psyr_2235	0.18	-0.5
2,597,376	+		Psyr_2235	0.18	-0.2
2,597,470	+		Psyr_2235	0.27	+0.3
2,597,729	-		Psyr_2235	0.50	-0.3
2,597,768	+		Psyr_2235	0.54	-1.7
2,597,768	+		Psyr_2235	0.54	+0.7
2,597,768	+		Psyr_2235	0.54	+0.1
2,597,769	-		Psyr_2235	0.54	+0.9
2,597,906	+		Psyr_2235	0.66	-1.3
2,597,906	+		Psyr_2235	0.66	-0.5
2,597,906	+		Psyr_2235	0.66	+1.2
2,597,906	+		Psyr_2235	0.66	+2.1
2,597,906	+		Psyr_2235	0.66	+0.3
2,597,906	+		Psyr_2235	0.66	+0.1
2,597,906	+		Psyr_2235	0.66	+0.3
2,597,906	+		Psyr_2235	0.66	+1.5
2,597,907	-		Psyr_2235	0.66	-1.7
2,597,907	-		Psyr_2235	0.66	+0.6
2,597,907	-		Psyr_2235	0.66	+0.5
2,597,907	-		Psyr_2235	0.66	-2.6
2,597,907	-		Psyr_2235	0.66	+0.4
2,597,907	-		Psyr_2235	0.66	-0.1
2,597,907	-		Psyr_2235	0.66	-0.1
2,597,907	-		Psyr_2235	0.66	-2.8
2,597,907	-		Psyr_2235	0.66	-2.4
2,597,907	-		Psyr_2235	0.66	-2.6
2,597,907	-		Psyr_2235	0.66	-2.0
2,598,114	+		Psyr_2235	0.85	-1.2
2,598,152	-		Psyr_2235	0.89	+0.5
2,598,301	+				+0.9
2,598,302	-				-0.3
2,598,302	-				+0.9
2,598,343	-				-1.1
2,598,361	+				-1.2
2,598,362	-				+1.5
2,598,365	+				-0.5
2,598,377	+				+0.0
2,598,378	-				+1.2
2,598,381	+				+0.3
2,598,381	+				-0.3
2,598,381	+				-0.1
2,598,381	+				+1.1
2,598,382	-				+1.8
2,598,382	-				+1.7
2,598,382	-				+0.0
2,598,382	-				-0.5
2,598,382	-				+0.8
2,598,382	-				+0.7
2,598,385	+				-1.2
2,598,385	+				-1.0
2,598,385	+				+2.5
2,598,385	+				+0.0
2,598,385	+				-1.5
2,598,386	-				+1.2
2,598,386	-				+0.1
2,598,411	+				-0.8
2,598,411	+				+1.0
2,598,449	+				-0.9
2,598,691	+		Psyr_2236	0.36	+1.0
2,598,691	+		Psyr_2236	0.36	+0.2
2,598,696	-		Psyr_2236	0.37	+1.5
2,598,830	+		Psyr_2236	0.53	-0.2
2,598,830	+		Psyr_2236	0.53	+0.9
2,598,830	+		Psyr_2236	0.53	+1.7
2,598,831	-		Psyr_2236	0.53	+1.0
2,598,831	-		Psyr_2236	0.53	-1.1
2,598,831	-		Psyr_2236	0.53	-1.0
2,598,884	+		Psyr_2236	0.59	+0.8
2,598,905	+		Psyr_2236	0.62	+2.2
2,598,935	+		Psyr_2236	0.66	+1.3
2,598,935	+		Psyr_2236	0.66	+0.8
2,598,936	-		Psyr_2236	0.66	-0.5
2,598,936	-		Psyr_2236	0.66	+0.9
2,598,936	-		Psyr_2236	0.66	+0.3
2,599,002	+		Psyr_2236	0.74	-0.1
2,599,026	-		Psyr_2236	0.76	-1.2
2,599,099	-		Psyr_2236	0.85	+0.0
2,599,139	+				+0.6
2,599,140	-				-0.6
2,599,140	-				-1.1
2,599,140	-				-1.1