Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2003

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2001 and Psyr_2002 are separated by 94 nucleotidesPsyr_2002 and Psyr_2003 are separated by 74 nucleotidesPsyr_2003 and Psyr_2004 are separated by 66 nucleotides Psyr_2001: Psyr_2001 - conserved hypothetical protein, at 2,322,793 to 2,323,434 _2001 Psyr_2002: Psyr_2002 - Protein of unknown function UPF0153, at 2,323,529 to 2,323,786 _2002 Psyr_2003: Psyr_2003 - conserved hypothetical protein, at 2,323,861 to 2,324,454 _2003 Psyr_2004: Psyr_2004 - citrate synthase, at 2,324,521 to 2,325,810 _2004 Position (kb) 2323 2324 2325Strain fitness (log2 ratio) -2 -1 0 1 2at 2323.258 kb on - strand, within Psyr_2001at 2323.258 kb on - strand, within Psyr_2001at 2323.397 kb on + strandat 2323.397 kb on + strandat 2323.398 kb on - strandat 2323.398 kb on - strandat 2323.398 kb on - strandat 2323.432 kb on + strandat 2323.433 kb on - strandat 2323.433 kb on - strandat 2323.433 kb on - strandat 2323.836 kb on + strandat 2323.837 kb on - strandat 2323.981 kb on + strand, within Psyr_2003at 2323.981 kb on + strand, within Psyr_2003at 2323.982 kb on - strand, within Psyr_2003at 2323.982 kb on - strand, within Psyr_2003at 2323.991 kb on - strand, within Psyr_2003at 2324.021 kb on + strand, within Psyr_2003at 2324.022 kb on - strand, within Psyr_2003at 2324.128 kb on + strand, within Psyr_2003at 2324.128 kb on + strand, within Psyr_2003at 2324.129 kb on - strand, within Psyr_2003at 2324.129 kb on - strand, within Psyr_2003at 2324.143 kb on - strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.242 kb on + strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.243 kb on - strand, within Psyr_2003at 2324.263 kb on + strand, within Psyr_2003at 2324.263 kb on + strand, within Psyr_2003at 2324.263 kb on + strand, within Psyr_2003at 2324.264 kb on - strand, within Psyr_2003at 2324.264 kb on - strand, within Psyr_2003at 2324.336 kb on - strand, within Psyr_2003at 2324.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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2,323,258 - Psyr_2001 0.72 +0.6
2,323,258 - Psyr_2001 0.72 +0.8
2,323,397 + +1.3
2,323,397 + +1.4
2,323,398 - +1.1
2,323,398 - -0.9
2,323,398 - -0.7
2,323,432 + -0.3
2,323,433 - -0.2
2,323,433 - +0.3
2,323,433 - +1.8
2,323,836 + -0.5
2,323,837 - +2.2
2,323,981 + Psyr_2003 0.20 +1.2
2,323,981 + Psyr_2003 0.20 +1.7
2,323,982 - Psyr_2003 0.20 -0.1
2,323,982 - Psyr_2003 0.20 -1.7
2,323,991 - Psyr_2003 0.22 +0.2
2,324,021 + Psyr_2003 0.27 -2.7
2,324,022 - Psyr_2003 0.27 +0.5
2,324,128 + Psyr_2003 0.45 -0.6
2,324,128 + Psyr_2003 0.45 +0.6
2,324,129 - Psyr_2003 0.45 -1.0
2,324,129 - Psyr_2003 0.45 +0.3
2,324,143 - Psyr_2003 0.47 +0.1
2,324,242 + Psyr_2003 0.64 +1.1
2,324,242 + Psyr_2003 0.64 -0.2
2,324,242 + Psyr_2003 0.64 +0.6
2,324,242 + Psyr_2003 0.64 +1.4
2,324,242 + Psyr_2003 0.64 +1.4
2,324,242 + Psyr_2003 0.64 +1.6
2,324,242 + Psyr_2003 0.64 -1.0
2,324,243 - Psyr_2003 0.64 -0.9
2,324,243 - Psyr_2003 0.64 -1.1
2,324,243 - Psyr_2003 0.64 -1.2
2,324,243 - Psyr_2003 0.64 +0.7
2,324,243 - Psyr_2003 0.64 +0.4
2,324,243 - Psyr_2003 0.64 -1.4
2,324,243 - Psyr_2003 0.64 +1.2
2,324,243 - Psyr_2003 0.64 -0.5
2,324,263 + Psyr_2003 0.68 +1.2
2,324,263 + Psyr_2003 0.68 +1.1
2,324,263 + Psyr_2003 0.68 -0.9
2,324,264 - Psyr_2003 0.68 -0.8
2,324,264 - Psyr_2003 0.68 -0.2
2,324,336 - Psyr_2003 0.80 +1.9
2,324,413 - -0.4

Or see this region's nucleotide sequence