Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1341

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1340 and Psyr_1341 are separated by 51 nucleotidesPsyr_1341 and Psyr_1342 are separated by 65 nucleotides Psyr_1340: Psyr_1340 - Aminotransferase, class I and II, at 1,518,114 to 1,519,307 _1340 Psyr_1341: Psyr_1341 - Protein-P-II uridylyltransferase, at 1,519,359 to 1,522,055 _1341 Psyr_1342: Psyr_1342 - methionine aminopeptidase, type I, at 1,522,121 to 1,522,903 _1342 Position (kb) 1519 1520 1521 1522 1523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1518.488 kb on - strand, within Psyr_1340at 1518.488 kb on - strand, within Psyr_1340at 1518.670 kb on + strand, within Psyr_1340at 1518.670 kb on + strand, within Psyr_1340at 1518.671 kb on - strand, within Psyr_1340at 1518.682 kb on + strand, within Psyr_1340at 1518.682 kb on + strand, within Psyr_1340at 1518.682 kb on + strand, within Psyr_1340at 1518.683 kb on - strand, within Psyr_1340at 1518.877 kb on + strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.916 kb on + strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.917 kb on - strand, within Psyr_1340at 1518.925 kb on + strand, within Psyr_1340at 1518.926 kb on - strand, within Psyr_1340at 1518.972 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.023 kb on + strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.024 kb on - strand, within Psyr_1340at 1519.346 kb on + strandat 1519.347 kb on - strandat 1519.356 kb on + strandat 1519.357 kb on - strandat 1519.362 kb on + strandat 1519.363 kb on - strandat 1519.363 kb on - strandat 1519.363 kb on - strandat 1519.813 kb on + strand, within Psyr_1341at 1519.814 kb on - strand, within Psyr_1341at 1519.814 kb on - strand, within Psyr_1341at 1519.844 kb on + strand, within Psyr_1341at 1519.847 kb on + strand, within Psyr_1341at 1519.931 kb on - strand, within Psyr_1341at 1520.068 kb on + strand, within Psyr_1341at 1520.069 kb on - strand, within Psyr_1341at 1520.227 kb on + strand, within Psyr_1341at 1520.227 kb on + strand, within Psyr_1341at 1520.227 kb on + strand, within Psyr_1341at 1520.308 kb on + strand, within Psyr_1341at 1520.308 kb on + strand, within Psyr_1341at 1520.308 kb on + strand, within Psyr_1341at 1520.308 kb on + strand, within Psyr_1341at 1520.308 kb on + strand, within Psyr_1341at 1520.308 kb on + strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.309 kb on - strand, within Psyr_1341at 1520.314 kb on + strand, within Psyr_1341at 1520.435 kb on + strand, within Psyr_1341at 1520.436 kb on - strand, within Psyr_1341at 1520.436 kb on - strand, within Psyr_1341at 1520.557 kb on + strand, within Psyr_1341at 1520.557 kb on + strand, within Psyr_1341at 1520.557 kb on + strand, within Psyr_1341at 1520.558 kb on - strand, within Psyr_1341at 1520.629 kb on + strand, within Psyr_1341at 1520.629 kb on + strand, within Psyr_1341at 1520.630 kb on - strand, within Psyr_1341at 1520.630 kb on - strand, within Psyr_1341at 1520.630 kb on - strand, within Psyr_1341at 1520.682 kb on - strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.683 kb on + strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.684 kb on - strand, within Psyr_1341at 1520.740 kb on + strand, within Psyr_1341at 1520.740 kb on + strand, within Psyr_1341at 1520.741 kb on - strand, within Psyr_1341at 1520.831 kb on + strand, within Psyr_1341at 1520.831 kb on + strand, within Psyr_1341at 1520.904 kb on + strand, within Psyr_1341at 1520.904 kb on + strand, within Psyr_1341at 1520.905 kb on - strand, within Psyr_1341at 1520.905 kb on - strand, within Psyr_1341at 1520.914 kb on - strand, within Psyr_1341at 1520.914 kb on - strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.997 kb on + strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.998 kb on - strand, within Psyr_1341at 1520.999 kb on + strand, within Psyr_1341at 1521.001 kb on + strand, within Psyr_1341at 1521.001 kb on + strand, within Psyr_1341at 1521.002 kb on - strand, within Psyr_1341at 1521.002 kb on - strand, within Psyr_1341at 1521.002 kb on - strand, within Psyr_1341at 1521.002 kb on - strand, within Psyr_1341at 1521.521 kb on + strand, within Psyr_1341at 1521.521 kb on + strand, within Psyr_1341at 1521.522 kb on - strand, within Psyr_1341at 1521.522 kb on - strand, within Psyr_1341at 1522.044 kb on + strandat 1522.064 kb on - strandat 1522.506 kb on + strand, within Psyr_1342at 1522.506 kb on + strand, within Psyr_1342at 1522.507 kb on - strand, within Psyr_1342at 1522.507 kb on - strand, within Psyr_1342at 1522.594 kb on - strand, within Psyr_1342at 1522.719 kb on + strand, within Psyr_1342at 1522.720 kb on - strand, within Psyr_1342at 1522.720 kb on - strand, within Psyr_1342at 1522.720 kb on - strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.759 kb on + strand, within Psyr_1342at 1522.760 kb on - strand, within Psyr_1342at 1522.760 kb on - strand, within Psyr_1342at 1522.760 kb on - strand, within Psyr_1342at 1522.760 kb on - strand, within Psyr_1342at 1522.760 kb on - strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.761 kb on + strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.762 kb on - strand, within Psyr_1342at 1522.903 kb on + strandat 1522.994 kb on + strandat 1522.994 kb on + strandat 1522.994 kb on + strandat 1522.995 kb on - strandat 1522.995 kb on - strandat 1522.995 kb on - strandat 1522.996 kb on + strandat 1522.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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1,518,488 - Psyr_1340 0.31 +0.9
1,518,488 - Psyr_1340 0.31 +1.9
1,518,670 + Psyr_1340 0.47 +2.0
1,518,670 + Psyr_1340 0.47 +0.7
1,518,671 - Psyr_1340 0.47 -0.4
1,518,682 + Psyr_1340 0.48 +0.9
1,518,682 + Psyr_1340 0.48 -0.3
1,518,682 + Psyr_1340 0.48 -1.1
1,518,683 - Psyr_1340 0.48 -0.0
1,518,877 + Psyr_1340 0.64 -0.1
1,518,916 + Psyr_1340 0.67 -0.8
1,518,916 + Psyr_1340 0.67 -0.2
1,518,916 + Psyr_1340 0.67 +0.4
1,518,916 + Psyr_1340 0.67 -1.1
1,518,917 - Psyr_1340 0.67 +1.6
1,518,917 - Psyr_1340 0.67 -1.2
1,518,925 + Psyr_1340 0.68 +0.4
1,518,926 - Psyr_1340 0.68 -0.1
1,518,972 + Psyr_1340 0.72 -0.3
1,519,023 + Psyr_1340 0.76 -1.6
1,519,023 + Psyr_1340 0.76 -0.3
1,519,023 + Psyr_1340 0.76 +3.0
1,519,023 + Psyr_1340 0.76 +1.0
1,519,023 + Psyr_1340 0.76 +0.9
1,519,023 + Psyr_1340 0.76 -1.6
1,519,023 + Psyr_1340 0.76 +1.0
1,519,023 + Psyr_1340 0.76 -1.4
1,519,023 + Psyr_1340 0.76 -0.3
1,519,023 + Psyr_1340 0.76 -1.7
1,519,024 - Psyr_1340 0.76 +0.7
1,519,024 - Psyr_1340 0.76 +0.9
1,519,024 - Psyr_1340 0.76 -2.9
1,519,024 - Psyr_1340 0.76 +0.1
1,519,024 - Psyr_1340 0.76 +0.7
1,519,024 - Psyr_1340 0.76 -3.3
1,519,024 - Psyr_1340 0.76 +0.2
1,519,024 - Psyr_1340 0.76 +0.5
1,519,346 + -0.2
1,519,347 - +0.2
1,519,356 + +0.7
1,519,357 - -0.6
1,519,362 + +0.9
1,519,363 - +0.4
1,519,363 - -0.6
1,519,363 - -0.1
1,519,813 + Psyr_1341 0.17 +1.4
1,519,814 - Psyr_1341 0.17 +0.2
1,519,814 - Psyr_1341 0.17 +1.1
1,519,844 + Psyr_1341 0.18 +3.2
1,519,847 + Psyr_1341 0.18 +0.4
1,519,931 - Psyr_1341 0.21 +2.8
1,520,068 + Psyr_1341 0.26 +1.1
1,520,069 - Psyr_1341 0.26 +3.2
1,520,227 + Psyr_1341 0.32 +0.7
1,520,227 + Psyr_1341 0.32 +1.6
1,520,227 + Psyr_1341 0.32 -0.8
1,520,308 + Psyr_1341 0.35 +1.0
1,520,308 + Psyr_1341 0.35 -0.4
1,520,308 + Psyr_1341 0.35 +1.3
1,520,308 + Psyr_1341 0.35 +0.1
1,520,308 + Psyr_1341 0.35 -2.6
1,520,308 + Psyr_1341 0.35 +0.2
1,520,309 - Psyr_1341 0.35 -0.6
1,520,309 - Psyr_1341 0.35 +0.3
1,520,309 - Psyr_1341 0.35 -0.6
1,520,309 - Psyr_1341 0.35 -1.9
1,520,309 - Psyr_1341 0.35 -0.9
1,520,309 - Psyr_1341 0.35 -1.4
1,520,309 - Psyr_1341 0.35 -2.0
1,520,309 - Psyr_1341 0.35 -1.1
1,520,309 - Psyr_1341 0.35 -0.9
1,520,309 - Psyr_1341 0.35 +0.0
1,520,309 - Psyr_1341 0.35 -0.9
1,520,309 - Psyr_1341 0.35 -1.6
1,520,314 + Psyr_1341 0.35 -2.0
1,520,435 + Psyr_1341 0.40 -1.9
1,520,436 - Psyr_1341 0.40 +0.9
1,520,436 - Psyr_1341 0.40 +0.0
1,520,557 + Psyr_1341 0.44 +1.9
1,520,557 + Psyr_1341 0.44 -0.6
1,520,557 + Psyr_1341 0.44 +0.9
1,520,558 - Psyr_1341 0.44 +0.7
1,520,629 + Psyr_1341 0.47 -0.1
1,520,629 + Psyr_1341 0.47 -2.0
1,520,630 - Psyr_1341 0.47 +0.4
1,520,630 - Psyr_1341 0.47 -1.1
1,520,630 - Psyr_1341 0.47 +0.3
1,520,682 - Psyr_1341 0.49 +0.4
1,520,683 + Psyr_1341 0.49 +1.5
1,520,683 + Psyr_1341 0.49 +1.0
1,520,683 + Psyr_1341 0.49 -1.4
1,520,683 + Psyr_1341 0.49 -0.3
1,520,683 + Psyr_1341 0.49 -1.0
1,520,683 + Psyr_1341 0.49 +1.6
1,520,683 + Psyr_1341 0.49 +0.4
1,520,683 + Psyr_1341 0.49 -0.1
1,520,684 - Psyr_1341 0.49 -0.6
1,520,684 - Psyr_1341 0.49 -0.1
1,520,684 - Psyr_1341 0.49 -0.6
1,520,684 - Psyr_1341 0.49 +1.9
1,520,684 - Psyr_1341 0.49 -2.0
1,520,684 - Psyr_1341 0.49 -0.6
1,520,684 - Psyr_1341 0.49 -1.4
1,520,740 + Psyr_1341 0.51 -0.6
1,520,740 + Psyr_1341 0.51 -0.0
1,520,741 - Psyr_1341 0.51 +0.9
1,520,831 + Psyr_1341 0.55 +1.0
1,520,831 + Psyr_1341 0.55 -0.6
1,520,904 + Psyr_1341 0.57 -0.7
1,520,904 + Psyr_1341 0.57 -0.8
1,520,905 - Psyr_1341 0.57 -1.9
1,520,905 - Psyr_1341 0.57 +1.4
1,520,914 - Psyr_1341 0.58 +2.0
1,520,914 - Psyr_1341 0.58 +1.1
1,520,997 + Psyr_1341 0.61 -2.9
1,520,997 + Psyr_1341 0.61 +0.6
1,520,997 + Psyr_1341 0.61 -1.9
1,520,997 + Psyr_1341 0.61 -1.9
1,520,997 + Psyr_1341 0.61 -0.3
1,520,997 + Psyr_1341 0.61 -1.1
1,520,997 + Psyr_1341 0.61 -0.9
1,520,997 + Psyr_1341 0.61 +1.2
1,520,997 + Psyr_1341 0.61 -0.6
1,520,997 + Psyr_1341 0.61 -1.5
1,520,997 + Psyr_1341 0.61 +0.0
1,520,997 + Psyr_1341 0.61 -1.3
1,520,997 + Psyr_1341 0.61 +1.4
1,520,997 + Psyr_1341 0.61 -2.3
1,520,997 + Psyr_1341 0.61 -1.1
1,520,998 - Psyr_1341 0.61 +0.2
1,520,998 - Psyr_1341 0.61 -1.1
1,520,998 - Psyr_1341 0.61 -2.1
1,520,998 - Psyr_1341 0.61 -1.9
1,520,998 - Psyr_1341 0.61 -0.9
1,520,998 - Psyr_1341 0.61 +0.0
1,520,998 - Psyr_1341 0.61 -0.9
1,520,998 - Psyr_1341 0.61 -1.1
1,520,998 - Psyr_1341 0.61 -1.1
1,520,998 - Psyr_1341 0.61 -2.7
1,520,998 - Psyr_1341 0.61 -0.4
1,520,998 - Psyr_1341 0.61 +0.6
1,520,998 - Psyr_1341 0.61 -0.4
1,520,998 - Psyr_1341 0.61 -1.4
1,520,998 - Psyr_1341 0.61 -2.4
1,520,998 - Psyr_1341 0.61 -0.7
1,520,998 - Psyr_1341 0.61 -1.4
1,520,998 - Psyr_1341 0.61 -2.6
1,520,999 + Psyr_1341 0.61 +1.0
1,521,001 + Psyr_1341 0.61 -0.5
1,521,001 + Psyr_1341 0.61 -1.1
1,521,002 - Psyr_1341 0.61 -2.3
1,521,002 - Psyr_1341 0.61 +0.3
1,521,002 - Psyr_1341 0.61 +0.9
1,521,002 - Psyr_1341 0.61 -0.2
1,521,521 + Psyr_1341 0.80 +2.0
1,521,521 + Psyr_1341 0.80 +2.3
1,521,522 - Psyr_1341 0.80 -0.1
1,521,522 - Psyr_1341 0.80 +2.0
1,522,044 + +1.0
1,522,064 - +0.0
1,522,506 + Psyr_1342 0.49 +0.4
1,522,506 + Psyr_1342 0.49 +0.4
1,522,507 - Psyr_1342 0.49 +3.0
1,522,507 - Psyr_1342 0.49 -1.9
1,522,594 - Psyr_1342 0.60 -1.9
1,522,719 + Psyr_1342 0.76 -0.6
1,522,720 - Psyr_1342 0.77 -0.1
1,522,720 - Psyr_1342 0.77 +0.9
1,522,720 - Psyr_1342 0.77 +0.8
1,522,759 + Psyr_1342 0.81 +1.2
1,522,759 + Psyr_1342 0.81 +0.9
1,522,759 + Psyr_1342 0.81 -0.6
1,522,759 + Psyr_1342 0.81 -0.5
1,522,759 + Psyr_1342 0.81 +0.6
1,522,759 + Psyr_1342 0.81 +0.9
1,522,759 + Psyr_1342 0.81 -0.6
1,522,759 + Psyr_1342 0.81 -2.4
1,522,760 - Psyr_1342 0.82 -0.1
1,522,760 - Psyr_1342 0.82 -1.4
1,522,760 - Psyr_1342 0.82 -0.7
1,522,760 - Psyr_1342 0.82 +0.7
1,522,760 - Psyr_1342 0.82 -1.1
1,522,761 + Psyr_1342 0.82 +0.6
1,522,761 + Psyr_1342 0.82 +1.4
1,522,761 + Psyr_1342 0.82 +0.9
1,522,761 + Psyr_1342 0.82 +1.0
1,522,761 + Psyr_1342 0.82 -1.1
1,522,761 + Psyr_1342 0.82 +0.2
1,522,761 + Psyr_1342 0.82 +2.3
1,522,761 + Psyr_1342 0.82 +0.6
1,522,761 + Psyr_1342 0.82 +0.5
1,522,762 - Psyr_1342 0.82 +0.4
1,522,762 - Psyr_1342 0.82 +0.7
1,522,762 - Psyr_1342 0.82 -1.3
1,522,762 - Psyr_1342 0.82 -0.9
1,522,762 - Psyr_1342 0.82 +1.3
1,522,762 - Psyr_1342 0.82 -0.0
1,522,762 - Psyr_1342 0.82 -0.4
1,522,762 - Psyr_1342 0.82 +1.9
1,522,762 - Psyr_1342 0.82 -0.7
1,522,762 - Psyr_1342 0.82 +1.1
1,522,762 - Psyr_1342 0.82 -0.9
1,522,762 - Psyr_1342 0.82 +0.7
1,522,762 - Psyr_1342 0.82 -1.2
1,522,903 + +0.3
1,522,994 + +0.7
1,522,994 + +1.4
1,522,994 + +1.4
1,522,995 - -0.1
1,522,995 - +1.4
1,522,995 - +1.0
1,522,996 + +1.1
1,522,997 - +1.8

Or see this region's nucleotide sequence