Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1107

Experiment: KB with Carbenicillin 3.1 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1106 and Psyr_1107 are separated by 59 nucleotidesPsyr_1107 and Psyr_1108 are separated by 137 nucleotides Psyr_1106: Psyr_1106 - FecR protein, at 1,253,132 to 1,254,097 _1106 Psyr_1107: Psyr_1107 - Sigma-70 region 2, at 1,254,157 to 1,254,720 _1107 Psyr_1108: Psyr_1108 - glyceraldehyde-3-phosphate dehydrogenase, at 1,254,858 to 1,255,859 _1108 Position (kb) 1254 1255Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1253.310 kb on - strand, within Psyr_1106at 1253.310 kb on - strand, within Psyr_1106at 1253.495 kb on + strand, within Psyr_1106at 1253.495 kb on + strand, within Psyr_1106at 1253.518 kb on - strand, within Psyr_1106at 1253.625 kb on + strand, within Psyr_1106at 1253.625 kb on + strand, within Psyr_1106at 1253.889 kb on + strand, within Psyr_1106at 1254.187 kb on + strandat 1254.188 kb on - strandat 1254.223 kb on + strand, within Psyr_1107at 1254.223 kb on + strand, within Psyr_1107at 1254.224 kb on - strand, within Psyr_1107at 1254.266 kb on + strand, within Psyr_1107at 1254.266 kb on + strand, within Psyr_1107at 1254.266 kb on + strand, within Psyr_1107at 1254.267 kb on - strand, within Psyr_1107at 1254.618 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.622 kb on + strand, within Psyr_1107at 1254.623 kb on - strand, within Psyr_1107at 1254.749 kb on - strandat 1254.752 kb on + strandat 1254.752 kb on + strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.753 kb on - strandat 1254.859 kb on + strandat 1254.925 kb on + strandat 1254.937 kb on - strandat 1255.036 kb on + strand, within Psyr_1108at 1255.037 kb on - strand, within Psyr_1108at 1255.283 kb on - strand, within Psyr_1108at 1255.313 kb on - strand, within Psyr_1108at 1255.313 kb on - strand, within Psyr_1108at 1255.365 kb on + strand, within Psyr_1108at 1255.365 kb on + strand, within Psyr_1108at 1255.366 kb on - strand, within Psyr_1108at 1255.366 kb on - strand, within Psyr_1108at 1255.456 kb on + strand, within Psyr_1108at 1255.496 kb on + strand, within Psyr_1108at 1255.496 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.581 kb on + strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.582 kb on - strand, within Psyr_1108at 1255.637 kb on + strand, within Psyr_1108at 1255.637 kb on + strand, within Psyr_1108at 1255.637 kb on + strand, within Psyr_1108at 1255.638 kb on - strand, within Psyr_1108at 1255.701 kb on + strand, within Psyr_1108at 1255.701 kb on + strand, within Psyr_1108at 1255.702 kb on - strand, within Psyr_1108at 1255.702 kb on - strand, within Psyr_1108

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
remove
1,253,310 - Psyr_1106 0.18 -1.2
1,253,310 - Psyr_1106 0.18 -2.3
1,253,495 + Psyr_1106 0.38 -0.2
1,253,495 + Psyr_1106 0.38 +0.8
1,253,518 - Psyr_1106 0.40 +0.6
1,253,625 + Psyr_1106 0.51 -0.2
1,253,625 + Psyr_1106 0.51 -0.4
1,253,889 + Psyr_1106 0.78 +0.9
1,254,187 + +0.4
1,254,188 - -0.5
1,254,223 + Psyr_1107 0.12 +1.4
1,254,223 + Psyr_1107 0.12 -0.9
1,254,224 - Psyr_1107 0.12 -1.6
1,254,266 + Psyr_1107 0.19 +0.1
1,254,266 + Psyr_1107 0.19 +2.2
1,254,266 + Psyr_1107 0.19 +0.4
1,254,267 - Psyr_1107 0.20 +0.6
1,254,618 + Psyr_1107 0.82 +0.7
1,254,622 + Psyr_1107 0.82 -0.8
1,254,622 + Psyr_1107 0.82 +1.0
1,254,622 + Psyr_1107 0.82 -2.7
1,254,622 + Psyr_1107 0.82 -2.9
1,254,622 + Psyr_1107 0.82 -0.4
1,254,623 - Psyr_1107 0.83 -2.3
1,254,749 - +2.1
1,254,752 + +2.1
1,254,752 + +0.2
1,254,753 - -3.4
1,254,753 - +2.5
1,254,753 - -0.7
1,254,753 - -1.6
1,254,859 + -1.8
1,254,925 + -0.3
1,254,937 - +0.3
1,255,036 + Psyr_1108 0.18 -1.9
1,255,037 - Psyr_1108 0.18 -1.6
1,255,283 - Psyr_1108 0.42 +1.4
1,255,313 - Psyr_1108 0.45 -0.2
1,255,313 - Psyr_1108 0.45 -0.9
1,255,365 + Psyr_1108 0.51 +0.9
1,255,365 + Psyr_1108 0.51 -0.5
1,255,366 - Psyr_1108 0.51 -1.4
1,255,366 - Psyr_1108 0.51 -1.1
1,255,456 + Psyr_1108 0.60 +0.7
1,255,496 + Psyr_1108 0.64 +0.7
1,255,496 + Psyr_1108 0.64 +0.4
1,255,581 + Psyr_1108 0.72 +2.0
1,255,581 + Psyr_1108 0.72 -0.8
1,255,581 + Psyr_1108 0.72 -0.3
1,255,581 + Psyr_1108 0.72 -1.4
1,255,581 + Psyr_1108 0.72 +0.4
1,255,581 + Psyr_1108 0.72 -1.3
1,255,581 + Psyr_1108 0.72 +0.4
1,255,581 + Psyr_1108 0.72 -1.3
1,255,582 - Psyr_1108 0.72 -1.8
1,255,582 - Psyr_1108 0.72 -0.4
1,255,582 - Psyr_1108 0.72 +1.2
1,255,582 - Psyr_1108 0.72 -2.3
1,255,582 - Psyr_1108 0.72 +0.2
1,255,582 - Psyr_1108 0.72 -1.9
1,255,582 - Psyr_1108 0.72 -0.4
1,255,637 + Psyr_1108 0.78 -2.4
1,255,637 + Psyr_1108 0.78 +2.4
1,255,637 + Psyr_1108 0.78 -0.9
1,255,638 - Psyr_1108 0.78 -0.9
1,255,701 + Psyr_1108 0.84 -1.8
1,255,701 + Psyr_1108 0.84 -2.9
1,255,702 - Psyr_1108 0.84 -0.5
1,255,702 - Psyr_1108 0.84 -2.1

Or see this region's nucleotide sequence