Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0674 and Psyr_0675 are separated by 32 nucleotides Psyr_0675 and Psyr_0676 are separated by 94 nucleotides
Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166
_0674
Psyr_0675: Psyr_0675 - transcriptional regulator, TetR family, at 765,199 to 765,861
_0675
Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353
_0676
Position (kb) 765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 764.257 kb on - strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.376 kb on - strand at 764.392 kb on - strand at 764.424 kb on + strand at 764.513 kb on - strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.844 kb on + strand, within Psyr_0674 at 764.844 kb on + strand, within Psyr_0674 at 764.844 kb on + strand, within Psyr_0674 at 764.845 kb on - strand, within Psyr_0674 at 765.200 kb on + strand at 765.200 kb on + strand at 765.200 kb on + strand at 765.201 kb on - strand at 765.201 kb on - strand at 765.201 kb on - strand at 765.333 kb on - strand, within Psyr_0675 at 765.464 kb on + strand, within Psyr_0675 at 765.464 kb on + strand, within Psyr_0675 at 765.558 kb on + strand, within Psyr_0675 at 765.559 kb on - strand, within Psyr_0675 at 765.560 kb on + strand, within Psyr_0675 at 765.561 kb on - strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.666 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.904 kb on + strand at 765.905 kb on - strand at 765.957 kb on + strand at 766.341 kb on + strand, within Psyr_0676 at 766.341 kb on + strand, within Psyr_0676 at 766.341 kb on + strand, within Psyr_0676 at 766.341 kb on + strand, within Psyr_0676 at 766.342 kb on - strand, within Psyr_0676 at 766.342 kb on - strand, within Psyr_0676 at 766.569 kb on + strand, within Psyr_0676 at 766.570 kb on - strand, within Psyr_0676 at 766.570 kb on - strand, within Psyr_0676
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 764,257 - -2.0 764,332 + +0.2 764,332 + +0.5 764,332 + -1.3 764,332 + -1.9 764,333 - +0.9 764,333 - +0.3 764,333 - +0.3 764,376 - -2.2 764,392 - -0.7 764,424 + +0.6 764,513 - +1.8 764,533 + +0.3 764,533 + +0.4 764,533 + -1.3 764,533 + -0.3 764,533 + +0.7 764,533 + -0.3 764,533 + -1.1 764,533 + -0.0 764,533 + +0.5 764,533 + +1.1 764,533 + -0.0 764,533 + +0.9 764,534 - -1.7 764,534 - -1.2 764,534 - +0.7 764,534 - -1.0 764,534 - +1.2 764,550 + +1.3 764,550 + -0.4 764,550 + +0.4 764,550 + +1.5 764,551 - +1.1 764,551 - -1.9 764,551 - +0.2 764,844 + Psyr_0674 0.46 +1.1 764,844 + Psyr_0674 0.46 +0.6 764,844 + Psyr_0674 0.46 +0.9 764,845 - Psyr_0674 0.46 +0.4 765,200 + +1.8 765,200 + -0.2 765,200 + -0.7 765,201 - -0.1 765,201 - -1.1 765,201 - +0.2 765,333 - Psyr_0675 0.20 +0.3 765,464 + Psyr_0675 0.40 -1.5 765,464 + Psyr_0675 0.40 +0.8 765,558 + Psyr_0675 0.54 -0.7 765,559 - Psyr_0675 0.54 -0.9 765,560 + Psyr_0675 0.54 -1.3 765,561 - Psyr_0675 0.55 +1.1 765,653 + Psyr_0675 0.68 +1.1 765,653 + Psyr_0675 0.68 -0.1 765,653 + Psyr_0675 0.68 +0.5 765,653 + Psyr_0675 0.68 +0.3 765,653 + Psyr_0675 0.68 +1.3 765,653 + Psyr_0675 0.68 -2.8 765,653 + Psyr_0675 0.68 +0.3 765,653 + Psyr_0675 0.68 -0.1 765,653 + Psyr_0675 0.68 +1.7 765,653 + Psyr_0675 0.68 -0.2 765,653 + Psyr_0675 0.68 -0.3 765,654 - Psyr_0675 0.69 -0.7 765,654 - Psyr_0675 0.69 -1.9 765,654 - Psyr_0675 0.69 +3.6 765,654 - Psyr_0675 0.69 +0.3 765,654 - Psyr_0675 0.69 +0.3 765,654 - Psyr_0675 0.69 +0.1 765,654 - Psyr_0675 0.69 +2.3 765,654 - Psyr_0675 0.69 -1.6 765,654 - Psyr_0675 0.69 -1.2 765,654 - Psyr_0675 0.69 +0.4 765,666 + Psyr_0675 0.70 +1.1 765,677 + Psyr_0675 0.72 -0.9 765,677 + Psyr_0675 0.72 -0.9 765,677 + Psyr_0675 0.72 +0.3 765,677 + Psyr_0675 0.72 +1.4 765,677 + Psyr_0675 0.72 +0.4 765,678 - Psyr_0675 0.72 +1.0 765,678 - Psyr_0675 0.72 +0.7 765,678 - Psyr_0675 0.72 -2.1 765,678 - Psyr_0675 0.72 +1.6 765,678 - Psyr_0675 0.72 +1.7 765,678 - Psyr_0675 0.72 -2.3 765,680 + Psyr_0675 0.73 +0.1 765,680 + Psyr_0675 0.73 +0.2 765,680 + Psyr_0675 0.73 +0.7 765,681 - Psyr_0675 0.73 -1.2 765,681 - Psyr_0675 0.73 -1.6 765,681 - Psyr_0675 0.73 -0.2 765,681 - Psyr_0675 0.73 -1.0 765,681 - Psyr_0675 0.73 -1.7 765,681 - Psyr_0675 0.73 -2.4 765,681 - Psyr_0675 0.73 -2.1 765,904 + -1.5 765,905 - -1.3 765,957 + +0.0 766,341 + Psyr_0676 0.28 -0.3 766,341 + Psyr_0676 0.28 +0.3 766,341 + Psyr_0676 0.28 +1.0 766,341 + Psyr_0676 0.28 +0.1 766,342 - Psyr_0676 0.28 -1.6 766,342 - Psyr_0676 0.28 -0.5 766,569 + Psyr_0676 0.44 +2.0 766,570 - Psyr_0676 0.44 +0.2 766,570 - Psyr_0676 0.44 -1.1
Or see this region's nucleotide sequence