Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0617 and Psyr_0618 overlap by 4 nucleotides Psyr_0618 and Psyr_0619 are separated by 54 nucleotides Psyr_0619 and Psyr_0620 are separated by 191 nucleotides
Psyr_0617: Psyr_0617 - conserved hypothetical protein, at 705,149 to 706,924
_0617
Psyr_0618: Psyr_0618 - conserved hypothetical protein, at 706,921 to 707,526
_0618
Psyr_0619: Psyr_0619 - WavE lipopolysaccharide synthesis, at 707,581 to 708,624
_0619
Psyr_0620: Psyr_0620 - Outer membrane autotransporter barrel, at 708,816 to 711,095
_0620
Position (kb) 707
708
709 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.711 kb on + strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.712 kb on - strand, within Psyr_0617 at 706.763 kb on + strand at 706.763 kb on + strand at 706.763 kb on + strand at 706.763 kb on + strand at 706.763 kb on + strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.764 kb on - strand at 706.828 kb on + strand at 706.829 kb on - strand at 706.844 kb on + strand at 706.880 kb on + strand at 706.881 kb on - strand at 706.904 kb on + strand at 706.904 kb on + strand at 706.904 kb on + strand at 706.905 kb on - strand at 706.928 kb on + strand at 706.929 kb on - strand at 707.044 kb on + strand, within Psyr_0618 at 707.045 kb on - strand, within Psyr_0618 at 707.170 kb on - strand, within Psyr_0618 at 707.254 kb on + strand, within Psyr_0618 at 707.255 kb on - strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.260 kb on + strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.261 kb on - strand, within Psyr_0618 at 707.436 kb on - strand, within Psyr_0618 at 707.436 kb on - strand, within Psyr_0618 at 707.441 kb on + strand, within Psyr_0618 at 707.442 kb on - strand, within Psyr_0618 at 707.478 kb on - strand at 707.566 kb on + strand at 707.575 kb on - strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.667 kb on + strand at 707.667 kb on + strand at 707.667 kb on + strand at 707.668 kb on - strand at 707.668 kb on - strand at 707.668 kb on - strand at 707.668 kb on - strand at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.745 kb on + strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.746 kb on - strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.881 kb on + strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.882 kb on - strand, within Psyr_0619 at 707.936 kb on + strand, within Psyr_0619 at 707.937 kb on - strand, within Psyr_0619 at 707.937 kb on - strand, within Psyr_0619 at 707.937 kb on - strand, within Psyr_0619 at 707.953 kb on - strand, within Psyr_0619 at 708.007 kb on + strand, within Psyr_0619 at 708.007 kb on + strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.008 kb on - strand, within Psyr_0619 at 708.009 kb on + strand, within Psyr_0619 at 708.009 kb on + strand, within Psyr_0619 at 708.009 kb on + strand, within Psyr_0619 at 708.045 kb on + strand, within Psyr_0619 at 708.045 kb on + strand, within Psyr_0619 at 708.045 kb on + strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.046 kb on - strand, within Psyr_0619 at 708.047 kb on + strand, within Psyr_0619 at 708.267 kb on - strand, within Psyr_0619 at 708.443 kb on - strand, within Psyr_0619 at 708.443 kb on - strand, within Psyr_0619 at 708.479 kb on - strand, within Psyr_0619 at 708.479 kb on - strand, within Psyr_0619 at 708.530 kb on + strand at 708.530 kb on + strand at 708.531 kb on - strand at 708.531 kb on - strand at 708.622 kb on + strand at 708.622 kb on + strand at 708.622 kb on + strand at 708.623 kb on - strand at 708.623 kb on - strand at 708.623 kb on - strand at 708.671 kb on + strand at 708.680 kb on + strand at 708.680 kb on + strand at 708.680 kb on + strand at 708.680 kb on + strand at 708.681 kb on - strand at 708.681 kb on - strand at 708.690 kb on + strand at 708.691 kb on - strand at 708.704 kb on + strand at 708.710 kb on - strand at 708.754 kb on + strand at 708.755 kb on - strand at 708.755 kb on - strand at 708.761 kb on + strand at 708.762 kb on - strand at 708.791 kb on + strand at 708.791 kb on + strand at 708.791 kb on + strand at 708.791 kb on + strand at 708.792 kb on - strand at 708.792 kb on - strand at 708.792 kb on - strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.988 kb on + strand at 708.989 kb on - strand at 708.989 kb on - strand at 708.989 kb on - strand at 708.989 kb on - strand at 709.076 kb on + strand, within Psyr_0620 at 709.076 kb on + strand, within Psyr_0620 at 709.136 kb on + strand, within Psyr_0620 at 709.259 kb on - strand, within Psyr_0620 at 709.283 kb on + strand, within Psyr_0620 at 709.328 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.362 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.366 kb on + strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.367 kb on - strand, within Psyr_0620 at 709.381 kb on + strand, within Psyr_0620 at 709.385 kb on + strand, within Psyr_0620 at 709.389 kb on + strand, within Psyr_0620 at 709.389 kb on + strand, within Psyr_0620 at 709.389 kb on + strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.390 kb on - strand, within Psyr_0620 at 709.529 kb on + strand, within Psyr_0620 at 709.529 kb on + strand, within Psyr_0620 at 709.530 kb on - strand, within Psyr_0620 at 709.530 kb on - strand, within Psyr_0620 at 709.544 kb on + strand, within Psyr_0620 at 709.544 kb on + strand, within Psyr_0620 at 709.544 kb on + strand, within Psyr_0620 at 709.566 kb on + strand, within Psyr_0620 at 709.599 kb on + strand, within Psyr_0620
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 706,711 + Psyr_0617 0.88 -1.3 706,711 + Psyr_0617 0.88 -1.7 706,711 + Psyr_0617 0.88 -2.0 706,711 + Psyr_0617 0.88 -2.2 706,711 + Psyr_0617 0.88 -0.4 706,712 - Psyr_0617 0.88 -0.3 706,712 - Psyr_0617 0.88 -0.4 706,712 - Psyr_0617 0.88 -1.5 706,712 - Psyr_0617 0.88 +0.8 706,712 - Psyr_0617 0.88 -2.0 706,712 - Psyr_0617 0.88 -1.0 706,712 - Psyr_0617 0.88 +1.0 706,763 + -0.3 706,763 + -0.6 706,763 + +0.1 706,763 + +0.4 706,763 + -2.5 706,764 - -0.6 706,764 - -0.6 706,764 - +1.7 706,764 - -1.6 706,764 - -0.7 706,828 + -0.6 706,829 - -0.9 706,844 + -1.5 706,880 + -0.9 706,881 - +0.4 706,904 + +0.8 706,904 + +0.7 706,904 + +1.3 706,905 - -0.0 706,928 + -0.9 706,929 - +0.7 707,044 + Psyr_0618 0.20 +0.3 707,045 - Psyr_0618 0.20 -1.1 707,170 - Psyr_0618 0.41 -1.7 707,254 + Psyr_0618 0.55 -1.8 707,255 - Psyr_0618 0.55 -2.2 707,260 + Psyr_0618 0.56 +0.8 707,260 + Psyr_0618 0.56 +0.8 707,260 + Psyr_0618 0.56 -1.7 707,260 + Psyr_0618 0.56 -0.9 707,260 + Psyr_0618 0.56 -0.2 707,261 - Psyr_0618 0.56 +1.3 707,261 - Psyr_0618 0.56 -1.7 707,261 - Psyr_0618 0.56 -1.3 707,261 - Psyr_0618 0.56 +0.6 707,261 - Psyr_0618 0.56 -0.2 707,261 - Psyr_0618 0.56 +0.8 707,261 - Psyr_0618 0.56 +0.7 707,261 - Psyr_0618 0.56 +2.0 707,436 - Psyr_0618 0.85 -2.0 707,436 - Psyr_0618 0.85 -0.8 707,441 + Psyr_0618 0.86 -0.3 707,442 - Psyr_0618 0.86 -1.2 707,478 - -0.7 707,566 + +1.8 707,575 - -1.6 707,580 + +1.1 707,580 + +0.1 707,580 + -1.3 707,580 + +0.1 707,580 + +0.1 707,580 + -0.7 707,580 + -0.3 707,580 + -2.2 707,580 + -0.7 707,581 - +1.6 707,581 - -2.3 707,581 - +0.7 707,581 - -0.9 707,581 - +0.3 707,581 - -0.8 707,581 - -0.1 707,581 - -1.9 707,581 - +0.3 707,581 - -0.5 707,667 + -1.4 707,667 + -0.3 707,667 + -2.3 707,668 - -1.0 707,668 - -0.9 707,668 - -1.3 707,668 - -0.5 707,745 + Psyr_0619 0.16 +1.6 707,745 + Psyr_0619 0.16 -1.7 707,745 + Psyr_0619 0.16 +0.2 707,745 + Psyr_0619 0.16 -0.5 707,745 + Psyr_0619 0.16 -2.0 707,745 + Psyr_0619 0.16 -0.8 707,745 + Psyr_0619 0.16 +0.5 707,746 - Psyr_0619 0.16 +0.2 707,746 - Psyr_0619 0.16 -0.3 707,746 - Psyr_0619 0.16 +1.9 707,746 - Psyr_0619 0.16 +0.4 707,746 - Psyr_0619 0.16 -2.0 707,746 - Psyr_0619 0.16 -1.3 707,746 - Psyr_0619 0.16 -2.5 707,746 - Psyr_0619 0.16 -0.7 707,881 + Psyr_0619 0.29 +1.8 707,881 + Psyr_0619 0.29 -0.4 707,881 + Psyr_0619 0.29 -0.1 707,881 + Psyr_0619 0.29 +0.7 707,881 + Psyr_0619 0.29 -0.6 707,882 - Psyr_0619 0.29 +0.7 707,882 - Psyr_0619 0.29 +0.5 707,882 - Psyr_0619 0.29 -0.2 707,882 - Psyr_0619 0.29 -1.0 707,882 - Psyr_0619 0.29 -0.5 707,882 - Psyr_0619 0.29 -1.7 707,882 - Psyr_0619 0.29 -1.9 707,882 - Psyr_0619 0.29 -2.1 707,882 - Psyr_0619 0.29 +0.3 707,936 + Psyr_0619 0.34 -2.4 707,937 - Psyr_0619 0.34 -2.5 707,937 - Psyr_0619 0.34 +2.3 707,937 - Psyr_0619 0.34 -0.7 707,953 - Psyr_0619 0.36 -0.6 708,007 + Psyr_0619 0.41 -1.4 708,007 + Psyr_0619 0.41 -0.7 708,008 - Psyr_0619 0.41 +1.1 708,008 - Psyr_0619 0.41 +0.0 708,008 - Psyr_0619 0.41 +1.1 708,008 - Psyr_0619 0.41 +2.9 708,009 + Psyr_0619 0.41 -0.5 708,009 + Psyr_0619 0.41 +1.0 708,009 + Psyr_0619 0.41 -1.7 708,045 + Psyr_0619 0.44 +0.4 708,045 + Psyr_0619 0.44 +1.7 708,045 + Psyr_0619 0.44 +1.0 708,046 - Psyr_0619 0.45 +0.4 708,046 - Psyr_0619 0.45 +0.6 708,046 - Psyr_0619 0.45 -1.7 708,046 - Psyr_0619 0.45 -2.2 708,046 - Psyr_0619 0.45 -0.9 708,046 - Psyr_0619 0.45 +0.8 708,047 + Psyr_0619 0.45 -1.7 708,267 - Psyr_0619 0.66 +0.1 708,443 - Psyr_0619 0.83 +0.2 708,443 - Psyr_0619 0.83 +1.0 708,479 - Psyr_0619 0.86 +0.1 708,479 - Psyr_0619 0.86 +1.1 708,530 + -0.8 708,530 + -0.4 708,531 - +0.5 708,531 - -3.0 708,622 + -1.0 708,622 + +0.1 708,622 + -2.6 708,623 - +0.1 708,623 - +0.0 708,623 - -0.9 708,671 + -0.3 708,680 + +0.5 708,680 + -3.4 708,680 + -0.7 708,680 + -0.6 708,681 - -0.7 708,681 - +0.6 708,690 + +0.0 708,691 - -0.6 708,704 + +0.8 708,710 - +0.3 708,754 + -1.4 708,755 - +0.1 708,755 - -1.6 708,761 + +2.3 708,762 - +1.9 708,791 + -1.0 708,791 + +0.4 708,791 + +0.9 708,791 + +0.2 708,792 - -0.6 708,792 - +0.5 708,792 - -1.8 708,988 + +1.3 708,988 + +0.4 708,988 + -1.3 708,988 + -0.7 708,988 + -0.5 708,988 + +0.3 708,989 - -0.8 708,989 - -1.3 708,989 - -1.8 708,989 - -0.4 709,076 + Psyr_0620 0.11 -1.0 709,076 + Psyr_0620 0.11 -0.5 709,136 + Psyr_0620 0.14 +0.7 709,259 - Psyr_0620 0.19 -1.3 709,283 + Psyr_0620 0.20 +0.6 709,328 + Psyr_0620 0.22 -0.9 709,362 + Psyr_0620 0.24 -1.7 709,362 + Psyr_0620 0.24 -0.2 709,362 + Psyr_0620 0.24 +1.3 709,362 + Psyr_0620 0.24 -0.2 709,362 + Psyr_0620 0.24 -0.5 709,366 + Psyr_0620 0.24 -1.9 709,366 + Psyr_0620 0.24 -1.9 709,366 + Psyr_0620 0.24 -0.3 709,366 + Psyr_0620 0.24 -3.0 709,366 + Psyr_0620 0.24 -0.2 709,366 + Psyr_0620 0.24 +0.8 709,366 + Psyr_0620 0.24 +1.9 709,366 + Psyr_0620 0.24 +0.9 709,366 + Psyr_0620 0.24 -1.0 709,366 + Psyr_0620 0.24 -0.6 709,366 + Psyr_0620 0.24 +1.2 709,366 + Psyr_0620 0.24 -0.1 709,366 + Psyr_0620 0.24 +0.3 709,366 + Psyr_0620 0.24 -1.1 709,367 - Psyr_0620 0.24 -0.7 709,367 - Psyr_0620 0.24 -1.0 709,367 - Psyr_0620 0.24 -0.1 709,367 - Psyr_0620 0.24 -0.1 709,367 - Psyr_0620 0.24 -0.7 709,367 - Psyr_0620 0.24 -1.0 709,367 - Psyr_0620 0.24 -0.3 709,367 - Psyr_0620 0.24 -2.2 709,367 - Psyr_0620 0.24 +0.0 709,381 + Psyr_0620 0.25 +0.7 709,385 + Psyr_0620 0.25 +0.4 709,389 + Psyr_0620 0.25 +0.0 709,389 + Psyr_0620 0.25 -1.7 709,389 + Psyr_0620 0.25 +0.1 709,390 - Psyr_0620 0.25 +0.3 709,390 - Psyr_0620 0.25 +0.4 709,390 - Psyr_0620 0.25 -3.8 709,390 - Psyr_0620 0.25 -2.5 709,390 - Psyr_0620 0.25 -0.3 709,390 - Psyr_0620 0.25 -0.7 709,529 + Psyr_0620 0.31 -2.5 709,529 + Psyr_0620 0.31 -0.6 709,530 - Psyr_0620 0.31 -2.0 709,530 - Psyr_0620 0.31 +0.7 709,544 + Psyr_0620 0.32 +1.9 709,544 + Psyr_0620 0.32 -0.5 709,544 + Psyr_0620 0.32 -1.5 709,566 + Psyr_0620 0.33 -0.0 709,599 + Psyr_0620 0.34 -0.2
Or see this region's nucleotide sequence