Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0614

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0612 and Psyr_0613 are separated by 1 nucleotidesPsyr_0613 and Psyr_0614 are separated by 7 nucleotidesPsyr_0614 and Psyr_0615 are separated by 5 nucleotidesPsyr_0615 and Psyr_0616 overlap by 4 nucleotides Psyr_0612: Psyr_0612 - Nucleotidyl transferase, at 702,078 to 702,839 _0612 Psyr_0613: Psyr_0613 - conserved hypothetical protein, at 702,841 to 703,455 _0613 Psyr_0614: Psyr_0614 - HAD-superfamily hydrolase, subfamily IA, variant 3, at 703,463 to 704,101 _0614 Psyr_0615: Psyr_0615 - conserved hypothetical protein, at 704,107 to 704,829 _0615 Psyr_0616: Psyr_0616 - conserved domain protein, at 704,826 to 705,146 _0616 Position (kb) 703 704 705Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 702.563 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.591 kb on + strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.592 kb on - strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.593 kb on + strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.594 kb on - strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.672 kb on + strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.673 kb on - strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.726 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.756 kb on + strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.757 kb on - strand, within Psyr_0612at 702.888 kb on + strandat 703.119 kb on + strand, within Psyr_0613at 703.120 kb on - strand, within Psyr_0613at 703.165 kb on + strand, within Psyr_0613at 703.166 kb on - strand, within Psyr_0613at 703.166 kb on - strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.189 kb on + strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.190 kb on - strand, within Psyr_0613at 703.416 kb on + strandat 703.523 kb on + strandat 703.524 kb on - strandat 703.524 kb on - strandat 703.524 kb on - strandat 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.691 kb on + strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.692 kb on - strand, within Psyr_0614at 703.709 kb on + strand, within Psyr_0614at 703.709 kb on + strand, within Psyr_0614at 703.772 kb on + strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.773 kb on - strand, within Psyr_0614at 703.847 kb on + strand, within Psyr_0614at 703.848 kb on - strand, within Psyr_0614at 703.848 kb on - strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.907 kb on + strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.908 kb on - strand, within Psyr_0614at 703.909 kb on + strand, within Psyr_0614at 703.910 kb on - strand, within Psyr_0614at 703.910 kb on - strand, within Psyr_0614at 704.037 kb on + strand, within Psyr_0614at 704.037 kb on + strand, within Psyr_0614at 704.112 kb on + strandat 704.113 kb on - strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.173 kb on + strandat 704.174 kb on - strandat 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.185 kb on + strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.186 kb on - strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.208 kb on + strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.209 kb on - strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.216 kb on + strand, within Psyr_0615at 704.217 kb on - strand, within Psyr_0615at 704.232 kb on - strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615at 704.334 kb on - strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.459 kb on + strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.460 kb on - strand, within Psyr_0615at 704.527 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.695 kb on + strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.696 kb on - strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.699 kb on + strand, within Psyr_0615at 704.700 kb on - strand, within Psyr_0615at 704.700 kb on - strand, within Psyr_0615at 704.700 kb on - strand, within Psyr_0615at 704.928 kb on + strand, within Psyr_0616at 704.928 kb on + strand, within Psyr_0616at 704.928 kb on + strand, within Psyr_0616at 704.929 kb on - strand, within Psyr_0616

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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702,563 + Psyr_0612 0.64 +0.7
702,591 + Psyr_0612 0.67 -0.4
702,591 + Psyr_0612 0.67 +0.4
702,591 + Psyr_0612 0.67 +0.3
702,591 + Psyr_0612 0.67 -0.1
702,592 - Psyr_0612 0.67 +1.3
702,592 - Psyr_0612 0.67 -0.0
702,592 - Psyr_0612 0.67 -0.5
702,592 - Psyr_0612 0.67 -1.3
702,592 - Psyr_0612 0.67 +1.0
702,592 - Psyr_0612 0.67 -1.5
702,592 - Psyr_0612 0.67 -2.7
702,592 - Psyr_0612 0.67 -0.3
702,592 - Psyr_0612 0.67 -1.4
702,592 - Psyr_0612 0.67 -3.0
702,593 + Psyr_0612 0.68 -0.4
702,593 + Psyr_0612 0.68 +1.0
702,594 - Psyr_0612 0.68 -0.1
702,594 - Psyr_0612 0.68 -0.9
702,672 + Psyr_0612 0.78 +0.6
702,672 + Psyr_0612 0.78 -1.9
702,673 - Psyr_0612 0.78 +0.5
702,673 - Psyr_0612 0.78 -2.1
702,673 - Psyr_0612 0.78 -0.2
702,726 + Psyr_0612 0.85 +1.6
702,726 + Psyr_0612 0.85 +0.3
702,756 + Psyr_0612 0.89 +0.0
702,756 + Psyr_0612 0.89 +1.0
702,756 + Psyr_0612 0.89 +2.9
702,756 + Psyr_0612 0.89 +0.8
702,756 + Psyr_0612 0.89 +1.3
702,756 + Psyr_0612 0.89 +0.5
702,756 + Psyr_0612 0.89 -1.7
702,757 - Psyr_0612 0.89 -0.0
702,757 - Psyr_0612 0.89 -2.4
702,757 - Psyr_0612 0.89 +0.1
702,757 - Psyr_0612 0.89 +0.3
702,757 - Psyr_0612 0.89 -1.9
702,757 - Psyr_0612 0.89 +1.0
702,888 + +1.1
703,119 + Psyr_0613 0.45 +0.5
703,120 - Psyr_0613 0.45 +0.7
703,165 + Psyr_0613 0.53 -1.0
703,166 - Psyr_0613 0.53 +1.1
703,166 - Psyr_0613 0.53 +0.7
703,189 + Psyr_0613 0.57 -0.0
703,189 + Psyr_0613 0.57 -1.9
703,190 - Psyr_0613 0.57 +0.5
703,190 - Psyr_0613 0.57 +0.8
703,190 - Psyr_0613 0.57 +0.0
703,190 - Psyr_0613 0.57 +1.0
703,190 - Psyr_0613 0.57 -0.3
703,190 - Psyr_0613 0.57 -1.3
703,190 - Psyr_0613 0.57 -0.2
703,190 - Psyr_0613 0.57 -0.1
703,190 - Psyr_0613 0.57 +0.3
703,416 + -1.9
703,523 + -2.9
703,524 - -2.2
703,524 - -1.3
703,524 - +0.2
703,691 + Psyr_0614 0.36 +0.3
703,691 + Psyr_0614 0.36 -2.7
703,691 + Psyr_0614 0.36 -1.3
703,691 + Psyr_0614 0.36 +0.3
703,692 - Psyr_0614 0.36 -1.9
703,692 - Psyr_0614 0.36 -2.3
703,692 - Psyr_0614 0.36 +0.3
703,709 + Psyr_0614 0.38 -1.1
703,709 + Psyr_0614 0.38 +0.1
703,772 + Psyr_0614 0.48 -1.9
703,773 - Psyr_0614 0.49 -0.7
703,773 - Psyr_0614 0.49 +0.1
703,773 - Psyr_0614 0.49 -0.6
703,847 + Psyr_0614 0.60 -0.3
703,848 - Psyr_0614 0.60 -2.4
703,848 - Psyr_0614 0.60 +1.3
703,907 + Psyr_0614 0.69 +1.4
703,907 + Psyr_0614 0.69 -1.7
703,907 + Psyr_0614 0.69 -1.0
703,907 + Psyr_0614 0.69 -0.8
703,907 + Psyr_0614 0.69 +0.7
703,907 + Psyr_0614 0.69 +0.9
703,907 + Psyr_0614 0.69 +0.0
703,907 + Psyr_0614 0.69 -1.9
703,907 + Psyr_0614 0.69 -2.2
703,907 + Psyr_0614 0.69 +0.5
703,907 + Psyr_0614 0.69 -2.9
703,907 + Psyr_0614 0.69 -0.4
703,907 + Psyr_0614 0.69 +0.1
703,907 + Psyr_0614 0.69 +1.1
703,907 + Psyr_0614 0.69 -1.8
703,908 - Psyr_0614 0.70 -0.4
703,908 - Psyr_0614 0.70 -2.5
703,908 - Psyr_0614 0.70 +1.0
703,908 - Psyr_0614 0.70 -0.2
703,908 - Psyr_0614 0.70 +0.2
703,908 - Psyr_0614 0.70 +0.3
703,908 - Psyr_0614 0.70 -0.2
703,908 - Psyr_0614 0.70 +1.0
703,908 - Psyr_0614 0.70 +0.7
703,908 - Psyr_0614 0.70 +0.3
703,908 - Psyr_0614 0.70 -0.0
703,908 - Psyr_0614 0.70 -0.5
703,908 - Psyr_0614 0.70 -0.7
703,908 - Psyr_0614 0.70 -0.8
703,908 - Psyr_0614 0.70 +1.3
703,908 - Psyr_0614 0.70 -0.7
703,908 - Psyr_0614 0.70 +1.1
703,908 - Psyr_0614 0.70 +0.7
703,908 - Psyr_0614 0.70 +0.6
703,908 - Psyr_0614 0.70 -1.7
703,909 + Psyr_0614 0.70 +0.3
703,910 - Psyr_0614 0.70 -0.8
703,910 - Psyr_0614 0.70 +1.0
704,037 + Psyr_0614 0.90 +1.1
704,037 + Psyr_0614 0.90 +0.7
704,112 + -0.7
704,113 - +0.8
704,173 + -1.0
704,173 + +2.0
704,173 + -0.5
704,173 + -0.9
704,173 + -0.7
704,174 - +0.2
704,185 + Psyr_0615 0.11 +0.7
704,185 + Psyr_0615 0.11 -0.4
704,185 + Psyr_0615 0.11 +0.5
704,186 - Psyr_0615 0.11 -1.0
704,186 - Psyr_0615 0.11 -0.0
704,208 + Psyr_0615 0.14 -0.7
704,208 + Psyr_0615 0.14 +0.1
704,208 + Psyr_0615 0.14 +1.3
704,209 - Psyr_0615 0.14 -0.5
704,209 - Psyr_0615 0.14 -1.1
704,209 - Psyr_0615 0.14 -0.4
704,209 - Psyr_0615 0.14 +2.3
704,209 - Psyr_0615 0.14 +0.1
704,209 - Psyr_0615 0.14 +0.4
704,216 + Psyr_0615 0.15 -0.3
704,216 + Psyr_0615 0.15 +0.4
704,216 + Psyr_0615 0.15 -1.9
704,217 - Psyr_0615 0.15 +0.3
704,232 - Psyr_0615 0.17 +0.7
704,334 - Psyr_0615 0.31 +1.5
704,334 - Psyr_0615 0.31 +0.5
704,459 + Psyr_0615 0.49 +1.3
704,459 + Psyr_0615 0.49 +0.2
704,460 - Psyr_0615 0.49 -1.0
704,460 - Psyr_0615 0.49 +1.0
704,460 - Psyr_0615 0.49 +0.5
704,460 - Psyr_0615 0.49 +0.4
704,460 - Psyr_0615 0.49 -0.5
704,527 + Psyr_0615 0.58 -0.8
704,695 + Psyr_0615 0.81 -0.3
704,695 + Psyr_0615 0.81 +0.5
704,695 + Psyr_0615 0.81 +0.7
704,695 + Psyr_0615 0.81 -0.6
704,696 - Psyr_0615 0.81 -2.2
704,696 - Psyr_0615 0.81 -0.8
704,696 - Psyr_0615 0.81 -2.4
704,696 - Psyr_0615 0.81 +0.1
704,696 - Psyr_0615 0.81 +0.7
704,699 + Psyr_0615 0.82 -0.2
704,699 + Psyr_0615 0.82 -0.0
704,699 + Psyr_0615 0.82 +1.8
704,700 - Psyr_0615 0.82 -0.1
704,700 - Psyr_0615 0.82 -1.7
704,700 - Psyr_0615 0.82 +0.7
704,928 + Psyr_0616 0.32 -0.9
704,928 + Psyr_0616 0.32 -0.2
704,928 + Psyr_0616 0.32 +2.1
704,929 - Psyr_0616 0.32 -0.3

Or see this region's nucleotide sequence