Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0508

Experiment: KB with Carbenicillin 3.1 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0507 and Psyr_0508 are separated by 83 nucleotidesPsyr_0508 and Psyr_0509 are separated by 296 nucleotides Psyr_0507: Psyr_0507 - Na+/solute symporter, at 562,015 to 563,574 _0507 Psyr_0508: Psyr_0508 - lyase, putative, at 563,658 to 564,329 _0508 Psyr_0509: Psyr_0509 - PAS:GGDEF, at 564,626 to 566,785 _0509 Position (kb) 563 564 565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 562.845 kb on + strand, within Psyr_0507at 562.845 kb on + strand, within Psyr_0507at 562.846 kb on - strand, within Psyr_0507at 562.846 kb on - strand, within Psyr_0507at 563.106 kb on + strand, within Psyr_0507at 563.106 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.158 kb on + strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.159 kb on - strand, within Psyr_0507at 563.167 kb on + strand, within Psyr_0507at 563.168 kb on - strand, within Psyr_0507at 563.168 kb on - strand, within Psyr_0507at 563.168 kb on - strand, within Psyr_0507at 563.208 kb on - strand, within Psyr_0507at 563.208 kb on - strand, within Psyr_0507at 563.334 kb on - strand, within Psyr_0507at 563.334 kb on - strand, within Psyr_0507at 563.345 kb on + strand, within Psyr_0507at 563.392 kb on - strand, within Psyr_0507at 563.443 kb on + strandat 563.633 kb on - strandat 563.633 kb on - strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.689 kb on + strandat 563.690 kb on - strandat 563.690 kb on - strandat 563.738 kb on + strand, within Psyr_0508at 563.739 kb on - strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.740 kb on + strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.741 kb on - strand, within Psyr_0508at 563.758 kb on + strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.759 kb on - strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.857 kb on + strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.858 kb on - strand, within Psyr_0508at 563.889 kb on + strand, within Psyr_0508at 563.890 kb on - strand, within Psyr_0508at 563.890 kb on - strand, within Psyr_0508at 563.899 kb on + strand, within Psyr_0508at 563.899 kb on + strand, within Psyr_0508at 563.899 kb on + strand, within Psyr_0508at 563.900 kb on - strand, within Psyr_0508at 563.923 kb on + strand, within Psyr_0508at 563.924 kb on - strand, within Psyr_0508at 563.974 kb on + strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 563.975 kb on - strand, within Psyr_0508at 564.014 kb on - strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.021 kb on + strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.022 kb on - strand, within Psyr_0508at 564.054 kb on + strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.055 kb on - strand, within Psyr_0508at 564.113 kb on + strand, within Psyr_0508at 564.113 kb on + strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.114 kb on - strand, within Psyr_0508at 564.179 kb on + strand, within Psyr_0508at 564.232 kb on + strand, within Psyr_0508at 564.233 kb on - strand, within Psyr_0508at 564.236 kb on + strand, within Psyr_0508at 564.236 kb on + strand, within Psyr_0508at 564.252 kb on + strand, within Psyr_0508at 564.253 kb on - strand, within Psyr_0508at 564.255 kb on + strand, within Psyr_0508at 564.255 kb on + strand, within Psyr_0508at 564.324 kb on + strandat 564.324 kb on + strandat 564.324 kb on + strandat 564.325 kb on - strandat 564.344 kb on + strandat 564.356 kb on + strandat 564.357 kb on - strandat 564.402 kb on + strandat 564.540 kb on - strandat 564.581 kb on + strandat 564.581 kb on + strandat 564.582 kb on - strandat 564.587 kb on + strandat 564.587 kb on + strandat 564.588 kb on - strandat 564.588 kb on - strandat 564.588 kb on - strandat 564.597 kb on + strandat 564.598 kb on - strandat 564.690 kb on + strandat 564.699 kb on + strandat 564.699 kb on + strandat 564.699 kb on + strandat 564.784 kb on - strandat 564.784 kb on - strandat 564.784 kb on - strandat 564.904 kb on + strand, within Psyr_0509at 564.913 kb on + strand, within Psyr_0509at 564.914 kb on - strand, within Psyr_0509at 564.914 kb on - strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.983 kb on + strand, within Psyr_0509at 564.984 kb on - strand, within Psyr_0509at 564.984 kb on - strand, within Psyr_0509at 564.984 kb on - strand, within Psyr_0509at 564.984 kb on - strand, within Psyr_0509at 565.186 kb on + strand, within Psyr_0509at 565.197 kb on + strand, within Psyr_0509at 565.198 kb on - strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.244 kb on + strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.245 kb on - strand, within Psyr_0509at 565.263 kb on + strand, within Psyr_0509at 565.299 kb on - strand, within Psyr_0509at 565.316 kb on + strand, within Psyr_0509

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
remove
562,845 + Psyr_0507 0.53 +0.6
562,845 + Psyr_0507 0.53 -1.4
562,846 - Psyr_0507 0.53 -0.4
562,846 - Psyr_0507 0.53 -2.5
563,106 + Psyr_0507 0.70 +0.4
563,106 + Psyr_0507 0.70 -0.4
563,158 + Psyr_0507 0.73 +1.1
563,158 + Psyr_0507 0.73 +1.0
563,158 + Psyr_0507 0.73 +1.1
563,158 + Psyr_0507 0.73 -1.0
563,158 + Psyr_0507 0.73 +0.9
563,159 - Psyr_0507 0.73 +0.5
563,159 - Psyr_0507 0.73 -1.0
563,159 - Psyr_0507 0.73 +0.6
563,159 - Psyr_0507 0.73 +1.9
563,167 + Psyr_0507 0.74 +0.6
563,168 - Psyr_0507 0.74 -0.4
563,168 - Psyr_0507 0.74 -2.2
563,168 - Psyr_0507 0.74 -2.8
563,208 - Psyr_0507 0.76 -0.6
563,208 - Psyr_0507 0.76 -0.8
563,334 - Psyr_0507 0.85 -1.3
563,334 - Psyr_0507 0.85 +0.8
563,345 + Psyr_0507 0.85 +0.4
563,392 - Psyr_0507 0.88 -0.7
563,443 + -1.1
563,633 - -0.6
563,633 - +0.7
563,689 + -0.4
563,689 + -2.1
563,689 + -4.0
563,689 + -0.5
563,689 + +0.3
563,690 - -0.5
563,690 - +1.3
563,738 + Psyr_0508 0.12 -0.3
563,739 - Psyr_0508 0.12 +0.7
563,740 + Psyr_0508 0.12 -0.4
563,740 + Psyr_0508 0.12 +0.6
563,740 + Psyr_0508 0.12 -2.1
563,740 + Psyr_0508 0.12 +1.5
563,741 - Psyr_0508 0.12 +0.4
563,741 - Psyr_0508 0.12 +0.2
563,741 - Psyr_0508 0.12 -0.1
563,741 - Psyr_0508 0.12 +0.3
563,758 + Psyr_0508 0.15 +0.7
563,759 - Psyr_0508 0.15 +1.0
563,759 - Psyr_0508 0.15 +1.0
563,857 + Psyr_0508 0.30 -1.0
563,857 + Psyr_0508 0.30 -1.2
563,857 + Psyr_0508 0.30 -1.1
563,858 - Psyr_0508 0.30 +1.2
563,858 - Psyr_0508 0.30 +0.9
563,889 + Psyr_0508 0.34 -0.6
563,890 - Psyr_0508 0.35 +1.0
563,890 - Psyr_0508 0.35 -1.3
563,899 + Psyr_0508 0.36 -1.4
563,899 + Psyr_0508 0.36 -0.5
563,899 + Psyr_0508 0.36 -0.9
563,900 - Psyr_0508 0.36 -2.2
563,923 + Psyr_0508 0.39 -1.4
563,924 - Psyr_0508 0.40 -0.4
563,974 + Psyr_0508 0.47 -0.4
563,975 - Psyr_0508 0.47 +0.6
563,975 - Psyr_0508 0.47 -1.2
563,975 - Psyr_0508 0.47 +0.4
564,014 - Psyr_0508 0.53 -0.4
564,021 + Psyr_0508 0.54 +1.3
564,021 + Psyr_0508 0.54 -0.2
564,021 + Psyr_0508 0.54 +0.7
564,021 + Psyr_0508 0.54 +0.7
564,022 - Psyr_0508 0.54 +0.4
564,022 - Psyr_0508 0.54 +0.5
564,022 - Psyr_0508 0.54 +1.1
564,022 - Psyr_0508 0.54 -0.8
564,022 - Psyr_0508 0.54 +1.0
564,022 - Psyr_0508 0.54 +1.0
564,022 - Psyr_0508 0.54 +0.2
564,022 - Psyr_0508 0.54 +2.2
564,054 + Psyr_0508 0.59 +0.5
564,055 - Psyr_0508 0.59 -0.4
564,055 - Psyr_0508 0.59 +1.2
564,113 + Psyr_0508 0.68 +0.1
564,113 + Psyr_0508 0.68 -0.7
564,114 - Psyr_0508 0.68 +1.0
564,114 - Psyr_0508 0.68 -0.2
564,114 - Psyr_0508 0.68 +0.6
564,114 - Psyr_0508 0.68 +3.0
564,179 + Psyr_0508 0.78 +0.0
564,232 + Psyr_0508 0.85 -1.1
564,233 - Psyr_0508 0.86 -0.3
564,236 + Psyr_0508 0.86 -0.1
564,236 + Psyr_0508 0.86 -0.8
564,252 + Psyr_0508 0.88 -1.1
564,253 - Psyr_0508 0.89 -0.3
564,255 + Psyr_0508 0.89 +0.5
564,255 + Psyr_0508 0.89 +0.8
564,324 + +0.4
564,324 + -1.4
564,324 + -2.1
564,325 - -0.8
564,344 + -1.9
564,356 + -2.9
564,357 - +0.6
564,402 + -0.5
564,540 - -1.4
564,581 + +1.1
564,581 + -0.4
564,582 - -2.1
564,587 + -0.2
564,587 + -0.4
564,588 - +0.4
564,588 - -3.1
564,588 - -0.6
564,597 + -1.0
564,598 - -0.3
564,690 + +0.5
564,699 + +0.4
564,699 + +0.3
564,699 + -1.9
564,784 - -1.1
564,784 - -0.2
564,784 - -0.9
564,904 + Psyr_0509 0.13 -0.7
564,913 + Psyr_0509 0.13 -2.7
564,914 - Psyr_0509 0.13 -1.0
564,914 - Psyr_0509 0.13 +0.1
564,983 + Psyr_0509 0.17 +1.2
564,983 + Psyr_0509 0.17 +0.7
564,984 - Psyr_0509 0.17 +0.8
564,984 - Psyr_0509 0.17 -2.9
564,984 - Psyr_0509 0.17 -1.6
564,984 - Psyr_0509 0.17 -0.8
565,186 + Psyr_0509 0.26 -0.0
565,197 + Psyr_0509 0.26 -1.1
565,198 - Psyr_0509 0.26 -1.1
565,244 + Psyr_0509 0.29 +0.3
565,244 + Psyr_0509 0.29 +1.5
565,244 + Psyr_0509 0.29 -1.4
565,244 + Psyr_0509 0.29 -0.0
565,244 + Psyr_0509 0.29 +0.1
565,244 + Psyr_0509 0.29 +0.3
565,244 + Psyr_0509 0.29 +0.0
565,244 + Psyr_0509 0.29 +3.1
565,245 - Psyr_0509 0.29 +0.9
565,245 - Psyr_0509 0.29 +0.7
565,245 - Psyr_0509 0.29 +0.9
565,263 + Psyr_0509 0.29 +1.6
565,299 - Psyr_0509 0.31 +0.5
565,316 + Psyr_0509 0.32 +0.4

Or see this region's nucleotide sequence