Experiment: KB with Carbenicillin 3.1 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0384 and Psyr_0385 are separated by 44 nucleotides Psyr_0385 and Psyr_0386 are separated by 2 nucleotides Psyr_0386 and Psyr_0387 are separated by 67 nucleotides Psyr_0387 and Psyr_0388 overlap by 4 nucleotides Psyr_0388 and Psyr_0389 overlap by 1 nucleotides
Psyr_0384: Psyr_0384 - Twin-arginine translocation protein TatA/E, at 414,233 to 414,508
_0384
Psyr_0385: Psyr_0385 - phosphoribosyl-ATP pyrophosphatase, at 414,553 to 414,885
_0385
Psyr_0386: Psyr_0386 - phosphoribosyl-AMP cyclohydrolase, at 414,888 to 415,280
_0386
Psyr_0387: Psyr_0387 - 2-octaprenylphenol hydroxylase, at 415,348 to 416,967
_0387
Psyr_0388: Psyr_0388 - Protein of unknown function DUF1243, at 416,964 to 417,587
_0388
Psyr_0389: Psyr_0389 - 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase / demethylmenaquinone methyltransferase, at 417,587 to 418,357
_0389
Position (kb) 415
416
417 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 414.462 kb on - strand, within Psyr_0384 at 414.462 kb on - strand, within Psyr_0384 at 414.523 kb on - strand at 414.523 kb on - strand at 414.555 kb on - strand at 414.693 kb on - strand, within Psyr_0385 at 414.693 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.877 kb on - strand at 414.877 kb on - strand at 414.905 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.937 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.280 kb on + strand at 415.281 kb on - strand at 415.281 kb on - strand at 415.281 kb on - strand at 415.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml remove 414,462 - Psyr_0384 0.83 -1.7 414,462 - Psyr_0384 0.83 -1.3 414,523 - -0.5 414,523 - +1.9 414,555 - +0.6 414,693 - Psyr_0385 0.42 -0.9 414,693 - Psyr_0385 0.42 -2.2 414,816 - Psyr_0385 0.79 -2.0 414,816 - Psyr_0385 0.79 -2.3 414,816 - Psyr_0385 0.79 -0.3 414,816 - Psyr_0385 0.79 +0.2 414,877 - +0.7 414,877 - +0.7 414,905 - +1.3 414,909 - +0.9 414,909 - -0.2 414,909 - +0.2 414,909 - +0.0 414,909 - +0.2 414,909 - +1.6 414,909 - -2.8 414,909 - +0.9 414,909 - +1.2 414,937 - Psyr_0386 0.12 +1.1 414,962 - Psyr_0386 0.19 -1.3 414,962 - Psyr_0386 0.19 -1.2 414,962 - Psyr_0386 0.19 +1.3 414,962 - Psyr_0386 0.19 -0.5 414,962 - Psyr_0386 0.19 +2.3 415,133 - Psyr_0386 0.62 -1.6 415,133 - Psyr_0386 0.62 -0.7 415,133 - Psyr_0386 0.62 -1.3 415,133 - Psyr_0386 0.62 -0.6 415,133 - Psyr_0386 0.62 +0.1 415,133 - Psyr_0386 0.62 +0.7 415,133 - Psyr_0386 0.62 -0.6 415,133 - Psyr_0386 0.62 -2.5 415,133 - Psyr_0386 0.62 +0.9 415,280 + +1.1 415,281 - -0.2 415,281 - -0.2 415,281 - -2.2 415,285 - -1.7
Or see this region's nucleotide sequence