Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0273

Experiment: KB with Carbenicillin 3.1 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0272 and Psyr_0273 are separated by 94 nucleotidesPsyr_0273 and Psyr_0274 overlap by 1 nucleotidesPsyr_0274 and Psyr_0275 are separated by 234 nucleotides Psyr_0272: Psyr_0272 - homoserine kinase, at 290,854 to 291,804 _0272 Psyr_0273: Psyr_0273 - Integrase, catalytic region, at 291,899 to 292,735 _0273 Psyr_0274: Psyr_0274 - ISPsy9, transposase OrfA, at 292,735 to 293,274 _0274 Psyr_0275: Psyr_0275 - Periplasmic solute binding protein, at 293,509 to 294,450 _0275 Position (kb) 291 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1at 291.781 kb on - strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.833 kb on + strandat 291.834 kb on - strandat 291.893 kb on - strandat 291.901 kb on - strandat 291.901 kb on - strandat 291.901 kb on - strandat 293.492 kb on + strandat 293.492 kb on + strandat 293.492 kb on + strandat 293.493 kb on - strandat 293.493 kb on - strandat 293.493 kb on - strandat 293.493 kb on - strandat 293.493 kb on - strandat 293.493 kb on - strandat 293.493 kb on - strandat 293.518 kb on - strandat 293.518 kb on - strandat 293.591 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
remove
291,781 - +0.4
291,833 + +0.5
291,833 + -1.2
291,833 + -2.8
291,833 + -1.5
291,834 - +0.2
291,893 - +0.8
291,901 - +0.9
291,901 - -0.6
291,901 - +1.3
293,492 + +0.3
293,492 + -0.1
293,492 + -0.7
293,493 - +1.5
293,493 - -1.2
293,493 - +0.9
293,493 - +0.6
293,493 - +0.3
293,493 - -1.7
293,493 - +1.2
293,518 - +0.2
293,518 - +1.3
293,591 + +0.3

Or see this region's nucleotide sequence