Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0266

Experiment: KB with Carbenicillin 3.1 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0264 and Psyr_0265 are separated by 53 nucleotidesPsyr_0265 and Psyr_0266 are separated by 23 nucleotidesPsyr_0266 and Psyr_0267 overlap by 4 nucleotidesPsyr_0267 and Psyr_0268 are separated by 9 nucleotides Psyr_0264: Psyr_0264 - Alginate biosynthesis sensor protein KinB, at 280,205 to 281,992 _0264 Psyr_0265: Psyr_0265 - N-acetylmuramoyl-L-alanine amidase, family 2, at 282,046 to 282,897 _0265 Psyr_0266: Psyr_0266 - GGDEF domain protein, at 282,921 to 284,993 _0266 Psyr_0267: Psyr_0267 - Endonuclease/exonuclease/phosphatase, at 284,990 to 285,865 _0267 Psyr_0268: Psyr_0268 - DSBA oxidoreductase, at 285,875 to 286,519 _0268 Position (kb) 282 283 284 285Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 281.942 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.972 kb on + strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.973 kb on - strandat 281.974 kb on + strandat 281.974 kb on + strandat 281.974 kb on + strandat 281.975 kb on - strandat 282.145 kb on + strand, within Psyr_0265at 282.145 kb on + strand, within Psyr_0265at 282.458 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.605 kb on + strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.606 kb on - strand, within Psyr_0265at 282.667 kb on + strand, within Psyr_0265at 282.667 kb on + strand, within Psyr_0265at 282.668 kb on - strand, within Psyr_0265at 282.701 kb on + strand, within Psyr_0265at 282.701 kb on + strand, within Psyr_0265at 282.701 kb on + strand, within Psyr_0265at 282.701 kb on + strand, within Psyr_0265at 282.701 kb on + strand, within Psyr_0265at 282.701 kb on + strand, within Psyr_0265at 282.702 kb on - strand, within Psyr_0265at 282.702 kb on - strand, within Psyr_0265at 282.702 kb on - strand, within Psyr_0265at 282.702 kb on - strand, within Psyr_0265at 282.702 kb on - strand, within Psyr_0265at 282.702 kb on - strand, within Psyr_0265at 282.717 kb on - strand, within Psyr_0265at 282.717 kb on - strand, within Psyr_0265at 282.811 kb on + strand, within Psyr_0265at 282.815 kb on + strandat 282.815 kb on + strandat 282.816 kb on - strandat 282.816 kb on - strandat 282.816 kb on - strandat 282.816 kb on - strandat 282.816 kb on - strandat 282.872 kb on + strandat 282.872 kb on + strandat 282.873 kb on - strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.878 kb on + strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.879 kb on - strandat 282.964 kb on + strandat 282.964 kb on + strandat 282.964 kb on + strandat 282.964 kb on + strandat 282.964 kb on + strandat 282.964 kb on + strandat 282.965 kb on - strandat 282.965 kb on - strandat 282.965 kb on - strandat 282.965 kb on - strandat 282.965 kb on - strandat 282.965 kb on - strandat 283.038 kb on + strandat 283.038 kb on + strandat 283.039 kb on - strandat 283.039 kb on - strandat 283.039 kb on - strandat 283.233 kb on + strand, within Psyr_0266at 283.234 kb on - strand, within Psyr_0266at 283.234 kb on - strand, within Psyr_0266at 283.234 kb on - strand, within Psyr_0266at 283.535 kb on - strand, within Psyr_0266at 283.756 kb on + strand, within Psyr_0266at 283.756 kb on + strand, within Psyr_0266at 283.756 kb on + strand, within Psyr_0266at 283.756 kb on + strand, within Psyr_0266at 283.756 kb on + strand, within Psyr_0266at 283.756 kb on + strand, within Psyr_0266at 283.757 kb on - strand, within Psyr_0266at 283.757 kb on - strand, within Psyr_0266at 283.757 kb on - strand, within Psyr_0266at 283.757 kb on - strand, within Psyr_0266at 283.757 kb on - strand, within Psyr_0266at 283.863 kb on + strand, within Psyr_0266at 283.864 kb on - strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.961 kb on + strand, within Psyr_0266at 283.962 kb on - strand, within Psyr_0266at 283.962 kb on - strand, within Psyr_0266at 283.962 kb on - strand, within Psyr_0266at 283.962 kb on - strand, within Psyr_0266at 283.963 kb on + strand, within Psyr_0266at 283.963 kb on + strand, within Psyr_0266at 283.963 kb on + strand, within Psyr_0266at 283.963 kb on + strand, within Psyr_0266at 283.963 kb on + strand, within Psyr_0266at 284.362 kb on + strand, within Psyr_0266at 284.362 kb on + strand, within Psyr_0266at 284.362 kb on + strand, within Psyr_0266at 284.363 kb on - strand, within Psyr_0266at 284.363 kb on - strand, within Psyr_0266at 284.363 kb on - strand, within Psyr_0266at 284.363 kb on - strand, within Psyr_0266at 284.363 kb on - strand, within Psyr_0266at 284.367 kb on - strand, within Psyr_0266at 284.367 kb on - strand, within Psyr_0266at 284.367 kb on - strand, within Psyr_0266at 284.646 kb on + strand, within Psyr_0266at 284.646 kb on + strand, within Psyr_0266at 284.646 kb on + strand, within Psyr_0266at 284.646 kb on + strand, within Psyr_0266at 284.647 kb on - strand, within Psyr_0266at 284.647 kb on - strand, within Psyr_0266at 284.959 kb on + strandat 284.959 kb on + strandat 284.959 kb on + strandat 284.960 kb on - strandat 284.960 kb on - strandat 284.960 kb on - strandat 284.960 kb on - strandat 285.098 kb on + strand, within Psyr_0267at 285.185 kb on + strand, within Psyr_0267at 285.186 kb on - strand, within Psyr_0267at 285.186 kb on - strand, within Psyr_0267at 285.307 kb on - strand, within Psyr_0267at 285.307 kb on - strand, within Psyr_0267at 285.307 kb on - strand, within Psyr_0267at 285.467 kb on + strand, within Psyr_0267at 285.705 kb on + strand, within Psyr_0267at 285.706 kb on - strand, within Psyr_0267at 285.706 kb on - strand, within Psyr_0267at 285.706 kb on - strand, within Psyr_0267at 285.876 kb on + strandat 285.876 kb on + strandat 285.876 kb on + strandat 285.876 kb on + strandat 285.876 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Carbenicillin 3.1 ug/ml
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281,942 + -0.7
281,972 + +0.0
281,972 + +0.4
281,972 + +1.1
281,972 + -1.1
281,972 + -1.8
281,972 + +0.2
281,972 + +0.8
281,972 + -1.0
281,972 + +0.4
281,972 + -0.2
281,972 + +0.7
281,973 - +0.4
281,973 - -0.8
281,973 - -1.3
281,973 - -0.0
281,973 - -0.6
281,973 - -1.0
281,973 - -1.1
281,973 - +0.6
281,973 - -1.6
281,973 - -0.1
281,973 - +0.2
281,973 - +1.1
281,973 - -0.4
281,973 - -4.1
281,974 + -0.9
281,974 + -1.2
281,974 + +0.3
281,975 - -0.5
282,145 + Psyr_0265 0.12 -1.3
282,145 + Psyr_0265 0.12 +0.4
282,458 + Psyr_0265 0.48 -4.3
282,605 + Psyr_0265 0.66 -2.5
282,605 + Psyr_0265 0.66 -2.1
282,605 + Psyr_0265 0.66 +0.6
282,605 + Psyr_0265 0.66 -3.6
282,605 + Psyr_0265 0.66 -2.3
282,605 + Psyr_0265 0.66 -2.9
282,605 + Psyr_0265 0.66 -2.6
282,605 + Psyr_0265 0.66 -1.8
282,605 + Psyr_0265 0.66 -2.2
282,605 + Psyr_0265 0.66 -0.5
282,605 + Psyr_0265 0.66 -1.8
282,606 - Psyr_0265 0.66 +0.9
282,606 - Psyr_0265 0.66 -2.0
282,606 - Psyr_0265 0.66 -1.1
282,606 - Psyr_0265 0.66 -0.6
282,606 - Psyr_0265 0.66 -2.9
282,606 - Psyr_0265 0.66 -3.2
282,606 - Psyr_0265 0.66 -3.5
282,606 - Psyr_0265 0.66 -1.0
282,667 + Psyr_0265 0.73 -1.9
282,667 + Psyr_0265 0.73 -1.2
282,668 - Psyr_0265 0.73 -2.6
282,701 + Psyr_0265 0.77 -3.4
282,701 + Psyr_0265 0.77 -0.2
282,701 + Psyr_0265 0.77 -3.1
282,701 + Psyr_0265 0.77 -2.3
282,701 + Psyr_0265 0.77 -1.0
282,701 + Psyr_0265 0.77 -1.8
282,702 - Psyr_0265 0.77 -1.6
282,702 - Psyr_0265 0.77 -3.5
282,702 - Psyr_0265 0.77 -0.6
282,702 - Psyr_0265 0.77 -2.7
282,702 - Psyr_0265 0.77 -3.0
282,702 - Psyr_0265 0.77 -2.4
282,717 - Psyr_0265 0.79 -1.3
282,717 - Psyr_0265 0.79 -3.6
282,811 + Psyr_0265 0.90 -2.0
282,815 + -2.3
282,815 + +0.1
282,816 - -1.6
282,816 - -4.2
282,816 - -1.8
282,816 - -1.5
282,816 - -0.2
282,872 + -2.5
282,872 + -0.2
282,873 - -0.2
282,878 + -2.3
282,878 + -1.0
282,878 + -1.6
282,878 + -2.6
282,878 + -1.2
282,878 + -2.6
282,878 + -1.8
282,878 + -1.2
282,879 - -1.2
282,879 - +0.4
282,879 - -0.2
282,879 - -1.2
282,879 - -1.8
282,879 - -1.0
282,879 - +0.8
282,879 - -0.4
282,879 - -1.8
282,879 - +0.6
282,879 - +1.4
282,879 - -1.3
282,879 - -1.2
282,964 + +0.1
282,964 + -1.5
282,964 + -1.0
282,964 + -2.8
282,964 + -0.5
282,964 + -0.8
282,965 - -0.9
282,965 - -3.1
282,965 - -1.2
282,965 - -2.2
282,965 - +0.4
282,965 - -0.2
283,038 + -0.8
283,038 + +0.2
283,039 - -0.2
283,039 - +0.9
283,039 - -0.2
283,233 + Psyr_0266 0.15 -1.8
283,234 - Psyr_0266 0.15 +0.4
283,234 - Psyr_0266 0.15 +0.2
283,234 - Psyr_0266 0.15 +1.9
283,535 - Psyr_0266 0.30 +0.0
283,756 + Psyr_0266 0.40 -0.0
283,756 + Psyr_0266 0.40 +0.2
283,756 + Psyr_0266 0.40 +0.9
283,756 + Psyr_0266 0.40 +0.4
283,756 + Psyr_0266 0.40 -1.5
283,756 + Psyr_0266 0.40 -0.5
283,757 - Psyr_0266 0.40 +0.5
283,757 - Psyr_0266 0.40 +0.4
283,757 - Psyr_0266 0.40 +1.9
283,757 - Psyr_0266 0.40 -0.5
283,757 - Psyr_0266 0.40 +1.2
283,863 + Psyr_0266 0.45 +0.2
283,864 - Psyr_0266 0.45 +0.1
283,961 + Psyr_0266 0.50 +0.3
283,961 + Psyr_0266 0.50 +1.2
283,961 + Psyr_0266 0.50 +0.3
283,961 + Psyr_0266 0.50 +1.4
283,961 + Psyr_0266 0.50 +0.9
283,961 + Psyr_0266 0.50 -2.6
283,961 + Psyr_0266 0.50 +0.1
283,962 - Psyr_0266 0.50 -1.2
283,962 - Psyr_0266 0.50 -0.6
283,962 - Psyr_0266 0.50 +0.0
283,962 - Psyr_0266 0.50 +1.6
283,963 + Psyr_0266 0.50 -1.5
283,963 + Psyr_0266 0.50 +1.5
283,963 + Psyr_0266 0.50 -1.2
283,963 + Psyr_0266 0.50 -1.8
283,963 + Psyr_0266 0.50 -0.1
284,362 + Psyr_0266 0.70 -0.7
284,362 + Psyr_0266 0.70 -0.6
284,362 + Psyr_0266 0.70 +1.0
284,363 - Psyr_0266 0.70 -1.8
284,363 - Psyr_0266 0.70 +0.4
284,363 - Psyr_0266 0.70 -0.9
284,363 - Psyr_0266 0.70 -2.6
284,363 - Psyr_0266 0.70 +1.1
284,367 - Psyr_0266 0.70 +0.5
284,367 - Psyr_0266 0.70 -2.6
284,367 - Psyr_0266 0.70 -1.0
284,646 + Psyr_0266 0.83 -0.9
284,646 + Psyr_0266 0.83 -0.7
284,646 + Psyr_0266 0.83 +0.3
284,646 + Psyr_0266 0.83 -0.3
284,647 - Psyr_0266 0.83 -0.3
284,647 - Psyr_0266 0.83 -1.1
284,959 + -0.1
284,959 + -0.8
284,959 + -0.0
284,960 - +1.1
284,960 - -0.8
284,960 - -1.8
284,960 - -1.3
285,098 + Psyr_0267 0.12 -1.0
285,185 + Psyr_0267 0.22 -0.7
285,186 - Psyr_0267 0.22 -1.1
285,186 - Psyr_0267 0.22 +0.6
285,307 - Psyr_0267 0.36 -0.7
285,307 - Psyr_0267 0.36 -0.2
285,307 - Psyr_0267 0.36 -1.0
285,467 + Psyr_0267 0.54 +0.7
285,705 + Psyr_0267 0.82 +0.4
285,706 - Psyr_0267 0.82 -1.1
285,706 - Psyr_0267 0.82 +0.0
285,706 - Psyr_0267 0.82 +1.2
285,876 + -1.0
285,876 + -1.1
285,876 + -2.1
285,876 + +0.2
285,876 + +0.2

Or see this region's nucleotide sequence