Strain Fitness in Pseudomonas sp. RS175 around PFR28_04805

Experiment: D-Mannitol carbon 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04803 and PFR28_04804 are separated by 120 nucleotidesPFR28_04804 and PFR28_04805 are separated by 46 nucleotidesPFR28_04805 and PFR28_04806 are separated by 404 nucleotides PFR28_04803: PFR28_04803 - hypothetical protein, at 5,484,754 to 5,485,245 _04803 PFR28_04804: PFR28_04804 - hypothetical protein, at 5,485,366 to 5,485,677 _04804 PFR28_04805: PFR28_04805 - hypothetical protein, at 5,485,724 to 5,486,311 _04805 PFR28_04806: PFR28_04806 - hypothetical protein, at 5,486,716 to 5,487,459 _04806 Position (kb) 5485 5486 5487Strain fitness (log2 ratio) -2 -1 0 1 2at 5484.765 kb on - strandat 5484.785 kb on + strandat 5484.786 kb on - strandat 5484.818 kb on + strand, within PFR28_04803at 5484.819 kb on - strand, within PFR28_04803at 5484.829 kb on + strand, within PFR28_04803at 5484.829 kb on + strand, within PFR28_04803at 5484.830 kb on - strand, within PFR28_04803at 5484.830 kb on - strand, within PFR28_04803at 5484.830 kb on - strand, within PFR28_04803at 5484.904 kb on + strand, within PFR28_04803at 5484.904 kb on + strand, within PFR28_04803at 5484.904 kb on + strand, within PFR28_04803at 5484.905 kb on - strand, within PFR28_04803at 5484.905 kb on - strand, within PFR28_04803at 5484.905 kb on - strand, within PFR28_04803at 5484.911 kb on + strand, within PFR28_04803at 5484.911 kb on + strand, within PFR28_04803at 5484.911 kb on + strand, within PFR28_04803at 5484.912 kb on - strand, within PFR28_04803at 5484.912 kb on - strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.955 kb on + strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5484.956 kb on - strand, within PFR28_04803at 5485.030 kb on + strand, within PFR28_04803at 5485.030 kb on + strand, within PFR28_04803at 5485.031 kb on - strand, within PFR28_04803at 5485.067 kb on - strand, within PFR28_04803at 5485.067 kb on - strand, within PFR28_04803at 5485.147 kb on - strand, within PFR28_04803at 5485.147 kb on - strand, within PFR28_04803at 5485.169 kb on - strand, within PFR28_04803at 5485.169 kb on - strand, within PFR28_04803at 5485.388 kb on + strandat 5485.388 kb on + strandat 5485.659 kb on + strandat 5485.744 kb on + strandat 5485.744 kb on + strandat 5485.744 kb on + strandat 5485.744 kb on + strandat 5485.744 kb on + strandat 5485.745 kb on - strandat 5485.745 kb on - strandat 5485.877 kb on + strand, within PFR28_04805at 5485.877 kb on + strand, within PFR28_04805at 5485.878 kb on - strand, within PFR28_04805at 5485.890 kb on + strand, within PFR28_04805at 5485.890 kb on + strand, within PFR28_04805at 5485.890 kb on + strand, within PFR28_04805at 5485.890 kb on + strand, within PFR28_04805at 5485.891 kb on - strand, within PFR28_04805at 5485.891 kb on - strand, within PFR28_04805at 5486.005 kb on + strand, within PFR28_04805at 5486.182 kb on - strand, within PFR28_04805at 5486.182 kb on - strand, within PFR28_04805at 5486.182 kb on - strand, within PFR28_04805at 5486.182 kb on - strand, within PFR28_04805at 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.303 kb on + strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.304 kb on - strandat 5486.312 kb on - strandat 5486.346 kb on + strandat 5486.346 kb on + strandat 5486.366 kb on + strandat 5486.366 kb on + strandat 5486.422 kb on + strandat 5486.546 kb on - strandat 5486.556 kb on + strandat 5486.595 kb on - strandat 5486.605 kb on + strandat 5486.605 kb on + strandat 5486.605 kb on + strandat 5486.640 kb on + strandat 5486.640 kb on + strandat 5486.641 kb on - strandat 5486.839 kb on + strand, within PFR28_04806at 5486.839 kb on + strand, within PFR28_04806at 5486.839 kb on + strand, within PFR28_04806at 5486.839 kb on + strand, within PFR28_04806at 5486.840 kb on - strand, within PFR28_04806at 5486.840 kb on - strand, within PFR28_04806at 5486.840 kb on - strand, within PFR28_04806at 5486.840 kb on - strand, within PFR28_04806at 5486.993 kb on - strand, within PFR28_04806at 5487.056 kb on - strand, within PFR28_04806at 5487.084 kb on + strand, within PFR28_04806at 5487.084 kb on + strand, within PFR28_04806at 5487.127 kb on + strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.128 kb on - strand, within PFR28_04806at 5487.131 kb on - strand, within PFR28_04806at 5487.166 kb on + strand, within PFR28_04806at 5487.167 kb on - strand, within PFR28_04806at 5487.167 kb on - strand, within PFR28_04806at 5487.212 kb on - strand, within PFR28_04806at 5487.262 kb on + strand, within PFR28_04806

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannitol carbon 10 mM
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5,484,765 - +0.2
5,484,785 + +0.0
5,484,786 - -0.4
5,484,818 + PFR28_04803 0.13 -0.1
5,484,819 - PFR28_04803 0.13 -1.9
5,484,829 + PFR28_04803 0.15 +0.3
5,484,829 + PFR28_04803 0.15 +0.8
5,484,830 - PFR28_04803 0.15 +0.4
5,484,830 - PFR28_04803 0.15 +0.1
5,484,830 - PFR28_04803 0.15 -0.5
5,484,904 + PFR28_04803 0.30 +0.4
5,484,904 + PFR28_04803 0.30 +0.3
5,484,904 + PFR28_04803 0.30 -0.5
5,484,905 - PFR28_04803 0.31 -1.0
5,484,905 - PFR28_04803 0.31 +0.3
5,484,905 - PFR28_04803 0.31 -0.2
5,484,911 + PFR28_04803 0.32 +1.1
5,484,911 + PFR28_04803 0.32 -0.7
5,484,911 + PFR28_04803 0.32 -0.5
5,484,912 - PFR28_04803 0.32 -0.8
5,484,912 - PFR28_04803 0.32 -1.5
5,484,955 + PFR28_04803 0.41 -0.9
5,484,955 + PFR28_04803 0.41 +0.7
5,484,955 + PFR28_04803 0.41 +1.7
5,484,955 + PFR28_04803 0.41 -0.1
5,484,955 + PFR28_04803 0.41 +0.0
5,484,956 - PFR28_04803 0.41 -0.5
5,484,956 - PFR28_04803 0.41 +0.3
5,484,956 - PFR28_04803 0.41 +1.3
5,484,956 - PFR28_04803 0.41 +0.1
5,484,956 - PFR28_04803 0.41 +0.0
5,484,956 - PFR28_04803 0.41 -1.0
5,485,030 + PFR28_04803 0.56 +0.8
5,485,030 + PFR28_04803 0.56 -0.3
5,485,031 - PFR28_04803 0.56 -0.9
5,485,067 - PFR28_04803 0.64 +0.1
5,485,067 - PFR28_04803 0.64 -0.1
5,485,147 - PFR28_04803 0.80 -0.1
5,485,147 - PFR28_04803 0.80 +0.5
5,485,169 - PFR28_04803 0.84 -0.7
5,485,169 - PFR28_04803 0.84 +0.3
5,485,388 + -0.6
5,485,388 + +0.3
5,485,659 + +0.3
5,485,744 + +0.8
5,485,744 + +0.0
5,485,744 + +0.7
5,485,744 + -0.4
5,485,744 + -0.7
5,485,745 - -0.8
5,485,745 - -0.6
5,485,877 + PFR28_04805 0.26 +0.4
5,485,877 + PFR28_04805 0.26 +0.5
5,485,878 - PFR28_04805 0.26 -0.9
5,485,890 + PFR28_04805 0.28 -0.2
5,485,890 + PFR28_04805 0.28 +0.4
5,485,890 + PFR28_04805 0.28 -0.9
5,485,890 + PFR28_04805 0.28 +0.5
5,485,891 - PFR28_04805 0.28 +0.2
5,485,891 - PFR28_04805 0.28 +0.3
5,486,005 + PFR28_04805 0.48 +0.5
5,486,182 - PFR28_04805 0.78 +0.0
5,486,182 - PFR28_04805 0.78 -0.7
5,486,182 - PFR28_04805 0.78 -1.5
5,486,182 - PFR28_04805 0.78 -1.3
5,486,303 + +2.3
5,486,303 + -0.6
5,486,303 + -0.4
5,486,303 + +0.3
5,486,303 + -0.6
5,486,303 + +0.1
5,486,303 + +0.3
5,486,303 + +1.3
5,486,303 + -0.7
5,486,304 - +0.7
5,486,304 - +0.5
5,486,304 - -0.2
5,486,304 - -0.9
5,486,304 - +0.7
5,486,304 - -0.7
5,486,304 - -0.8
5,486,304 - -0.4
5,486,304 - +1.1
5,486,304 - +0.6
5,486,304 - -0.8
5,486,304 - -1.1
5,486,312 - -1.1
5,486,346 + -0.7
5,486,346 + -0.5
5,486,366 + -0.6
5,486,366 + +0.2
5,486,422 + -0.0
5,486,546 - +0.6
5,486,556 + -0.1
5,486,595 - -0.2
5,486,605 + +0.1
5,486,605 + +0.4
5,486,605 + -0.3
5,486,640 + +0.3
5,486,640 + +0.4
5,486,641 - -0.2
5,486,839 + PFR28_04806 0.17 -0.7
5,486,839 + PFR28_04806 0.17 +0.0
5,486,839 + PFR28_04806 0.17 -0.7
5,486,839 + PFR28_04806 0.17 -0.1
5,486,840 - PFR28_04806 0.17 -0.6
5,486,840 - PFR28_04806 0.17 +0.3
5,486,840 - PFR28_04806 0.17 +0.8
5,486,840 - PFR28_04806 0.17 -0.5
5,486,993 - PFR28_04806 0.37 -0.5
5,487,056 - PFR28_04806 0.46 -0.1
5,487,084 + PFR28_04806 0.49 -0.1
5,487,084 + PFR28_04806 0.49 +0.2
5,487,127 + PFR28_04806 0.55 -0.1
5,487,128 - PFR28_04806 0.55 -0.9
5,487,128 - PFR28_04806 0.55 -0.7
5,487,128 - PFR28_04806 0.55 +0.2
5,487,128 - PFR28_04806 0.55 -0.3
5,487,128 - PFR28_04806 0.55 -0.5
5,487,128 - PFR28_04806 0.55 -0.1
5,487,128 - PFR28_04806 0.55 +0.3
5,487,128 - PFR28_04806 0.55 -0.2
5,487,128 - PFR28_04806 0.55 +0.6
5,487,131 - PFR28_04806 0.56 -0.4
5,487,166 + PFR28_04806 0.60 -0.9
5,487,167 - PFR28_04806 0.61 -0.5
5,487,167 - PFR28_04806 0.61 -0.2
5,487,212 - PFR28_04806 0.67 -0.5
5,487,262 + PFR28_04806 0.73 -0.8

Or see this region's nucleotide sequence