Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS25670

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
5,731,820	+		PFLU_RS25665	0.65	+0.2
5,731,820	+		PFLU_RS25665	0.65	-2.1
5,731,820	+		PFLU_RS25665	0.65	-0.8
5,731,820	+		PFLU_RS25665	0.65	+2.1
5,731,820	+		PFLU_RS25665	0.65	+0.5
5,731,820	+		PFLU_RS25665	0.65	+2.4
5,731,821	-		PFLU_RS25665	0.65	-1.4
5,731,821	-		PFLU_RS25665	0.65	+1.7
5,731,821	-		PFLU_RS25665	0.65	+1.6
5,731,821	-		PFLU_RS25665	0.65	+0.4
5,731,821	-		PFLU_RS25665	0.65	-0.1
5,731,821	-		PFLU_RS25665	0.65	-1.9
5,731,833	+		PFLU_RS25665	0.66	-0.6
5,731,834	-		PFLU_RS25665	0.66	+0.2
5,731,834	-		PFLU_RS25665	0.66	+0.9
5,731,834	-		PFLU_RS25665	0.66	-2.5
5,731,834	-		PFLU_RS25665	0.66	-0.9
5,731,860	+		PFLU_RS25665	0.67	+0.0
5,731,860	+		PFLU_RS25665	0.67	+0.0
5,731,860	+		PFLU_RS25665	0.67	+0.5
5,731,860	+		PFLU_RS25665	0.67	-1.3
5,731,860	+		PFLU_RS25665	0.67	-1.3
5,731,860	+		PFLU_RS25665	0.67	-0.0
5,731,861	-		PFLU_RS25665	0.67	-1.5
5,731,861	-		PFLU_RS25665	0.67	-0.2
5,731,861	-		PFLU_RS25665	0.67	+1.6
5,731,861	-		PFLU_RS25665	0.67	-1.8
5,731,861	-		PFLU_RS25665	0.67	+1.3
5,731,903	+		PFLU_RS25665	0.69	-0.2
5,731,903	+		PFLU_RS25665	0.69	-2.0
5,731,915	+		PFLU_RS25665	0.69	+0.4
5,731,916	-		PFLU_RS25665	0.69	+0.2
5,731,916	-		PFLU_RS25665	0.69	+0.0
5,731,932	+		PFLU_RS25665	0.70	+0.6
5,731,932	+		PFLU_RS25665	0.70	+0.6
5,731,932	+		PFLU_RS25665	0.70	+1.9
5,731,932	+		PFLU_RS25665	0.70	-2.0
5,731,932	+		PFLU_RS25665	0.70	-0.1
5,731,933	-		PFLU_RS25665	0.70	-0.4
5,731,933	-		PFLU_RS25665	0.70	+1.1
5,731,963	+		PFLU_RS25665	0.71	+1.0
5,731,964	-		PFLU_RS25665	0.71	+0.4
5,732,049	+		PFLU_RS25665	0.75	-0.8
5,732,050	-		PFLU_RS25665	0.75	-1.2
5,732,050	-		PFLU_RS25665	0.75	-1.5
5,732,091	+		PFLU_RS25665	0.77	-2.3
5,732,145	+		PFLU_RS25665	0.79	+1.1
5,732,146	-		PFLU_RS25665	0.79	+0.2
5,732,146	-		PFLU_RS25665	0.79	+0.0
5,732,223	+		PFLU_RS25665	0.83	-0.7
5,732,223	+		PFLU_RS25665	0.83	-0.1
5,732,223	+		PFLU_RS25665	0.83	+1.1
5,732,223	+		PFLU_RS25665	0.83	-1.4
5,732,223	+		PFLU_RS25665	0.83	-0.8
5,732,224	-		PFLU_RS25665	0.83	-0.1
5,732,224	-		PFLU_RS25665	0.83	+1.7
5,732,274	+		PFLU_RS25665	0.85	-0.5
5,732,274	+		PFLU_RS25665	0.85	+1.5
5,732,274	+		PFLU_RS25665	0.85	+0.1
5,732,274	+		PFLU_RS25665	0.85	-0.0
5,732,274	+		PFLU_RS25665	0.85	+0.6
5,732,275	-		PFLU_RS25665	0.85	+1.3
5,732,275	-		PFLU_RS25665	0.85	+0.2
5,732,275	-		PFLU_RS25665	0.85	-1.7
5,732,275	-		PFLU_RS25665	0.85	-0.5
5,732,275	-		PFLU_RS25665	0.85	+0.7
5,732,275	-		PFLU_RS25665	0.85	-0.6
5,732,294	-		PFLU_RS25665	0.86	+0.2
5,732,312	-		PFLU_RS25665	0.86	-3.3
5,732,312	-		PFLU_RS25665	0.86	-0.3
5,732,439	+				-0.2
5,732,439	+				+0.5
5,732,439	+				-0.4
5,732,439	+				-1.4
5,732,439	+				-0.3
5,732,439	+				-2.5
5,732,439	+				-0.3
5,732,439	+				+1.5
5,732,439	+				-1.3
5,732,439	+				+0.6
5,732,439	+				-0.5
5,732,439	+				-2.1
5,732,439	+				-0.1
5,732,439	+				-1.4
5,732,439	+				-0.5
5,732,439	+				+0.5
5,732,439	+				+1.1
5,732,439	+				-0.4
5,732,440	-				+0.2
5,732,440	-				+0.2
5,732,440	-				+0.6
5,732,440	-				-0.3
5,732,440	-				-0.6
5,732,440	-				-0.1
5,732,440	-				+0.0
5,732,440	-				+0.1
5,732,440	-				-0.3
5,732,440	-				+0.3
5,732,440	-				-0.5
5,732,440	-				-0.7
5,732,440	-				+0.5
5,732,440	-				-0.2
5,732,440	-				-0.7
5,732,440	-				-1.4
5,732,440	-				-2.6
5,732,440	-				-1.2
5,732,440	-				+0.3
5,732,440	-				+1.1
5,732,440	-				-0.3
5,732,440	-				-1.7
5,732,440	-				-1.4
5,732,440	-				+0.5
5,732,440	-				-1.4
5,732,440	-				+2.8
5,732,502	+				+1.1
5,732,502	+				-0.2
5,732,503	-				-1.6
5,732,525	+				-0.4
5,732,526	-				+2.3
5,732,526	-				+0.7
5,732,637	+				+0.0
5,732,637	+				+0.5
5,732,637	+				-0.2
5,732,637	+				+0.0
5,732,637	+				+0.6
5,732,638	-				+0.2
5,732,638	-				+0.3
5,732,638	-				+0.2
5,732,638	-				-0.5
5,732,638	-				-1.7
5,732,639	+				+0.8
5,732,639	+				-0.2
5,732,639	+				+1.7
5,732,639	+				-0.2
5,732,640	-				+0.8
5,732,640	-				-0.9
5,732,640	-				+0.7
5,732,640	-				-1.6
5,732,648	+				-1.8
5,732,648	+				+0.3
5,732,648	+				+0.5
5,732,649	-				+1.5
5,732,649	-				+0.3
5,732,649	-				-1.0
5,732,649	-				+0.4
5,732,703	+				+0.8
5,732,703	+				+0.3
5,732,704	-				-2.6
5,732,785	+				-0.7
5,732,785	+				-2.0
5,732,786	-				-1.1
5,732,786	-				-1.1
5,732,786	-				-0.3
5,732,787	+				-2.5
5,732,787	+				-3.0
5,732,787	+				-0.5
5,732,787	+				+0.8
5,732,787	+				+0.0
5,732,787	+				-2.5
5,732,787	+				-0.5
5,732,787	+				+0.6
5,732,787	+				-0.6
5,732,788	-				-1.0
5,732,788	-				-0.6
5,732,788	-				+0.6
5,732,788	-				-0.5
5,732,788	-				-0.1
5,732,788	-				+0.5
5,732,788	-				-0.1
5,732,788	-				-3.1
5,732,788	-				-1.6
5,732,788	-				-0.7
5,732,788	-				-0.5
5,732,788	-				-0.1
5,732,788	-				-0.5
5,732,788	-				-0.0
5,732,788	-				+0.3
5,732,828	+				-0.7
5,732,828	+				-1.4
5,732,828	+				-1.9
5,732,829	-				+0.7
5,732,829	-				-0.5
5,732,829	-				-1.8
5,732,829	-				-1.4
5,732,829	-				-1.1
5,732,856	+				-0.3
5,732,857	-				-0.7
5,732,862	+				-0.5
5,732,862	+				+1.2
5,732,862	+				-0.2
5,732,862	+				+1.7
5,732,862	+				+0.1
5,732,863	-				-0.7
5,732,864	+				-1.4
5,732,864	+				-0.4
5,732,864	+				-0.9
5,732,865	-				-2.0
5,732,865	-				-2.0
5,732,865	-				+0.2
5,732,865	-				-1.8
5,732,865	-				-1.4
5,732,976	+		PFLU_RS25670	0.15	-1.5
5,732,977	-		PFLU_RS25670	0.15	-0.2
5,732,977	-		PFLU_RS25670	0.15	-0.1
5,733,048	+		PFLU_RS25670	0.19	-3.0
5,733,048	+		PFLU_RS25670	0.19	+1.5
5,733,049	-		PFLU_RS25670	0.20	-0.2
5,733,049	-		PFLU_RS25670	0.20	-1.2
5,733,182	-		PFLU_RS25670	0.28	-0.6
5,733,427	+		PFLU_RS25670	0.44	-0.1
5,733,427	+		PFLU_RS25670	0.44	-1.7
5,733,427	+		PFLU_RS25670	0.44	+0.2
5,733,427	+		PFLU_RS25670	0.44	+0.2
5,733,427	+		PFLU_RS25670	0.44	+0.8
5,733,427	+		PFLU_RS25670	0.44	+0.3
5,733,427	+		PFLU_RS25670	0.44	-1.1
5,733,427	+		PFLU_RS25670	0.44	-0.5
5,733,427	+		PFLU_RS25670	0.44	-2.6
5,733,428	-		PFLU_RS25670	0.44	-0.2
5,733,428	-		PFLU_RS25670	0.44	-0.4
5,733,428	-		PFLU_RS25670	0.44	-2.0
5,733,428	-		PFLU_RS25670	0.44	+0.8
5,733,428	-		PFLU_RS25670	0.44	-0.2
5,733,428	-		PFLU_RS25670	0.44	+0.7
5,733,428	-		PFLU_RS25670	0.44	+0.1
5,733,428	-		PFLU_RS25670	0.44	-1.0
5,733,428	-		PFLU_RS25670	0.44	-2.3
5,733,480	+		PFLU_RS25670	0.47	+0.9
5,733,480	+		PFLU_RS25670	0.47	-1.1
5,733,481	-		PFLU_RS25670	0.47	-0.4
5,733,481	-		PFLU_RS25670	0.47	-0.2
5,733,549	-		PFLU_RS25670	0.52	-0.2
5,733,558	+		PFLU_RS25670	0.52	+1.3
5,733,559	-		PFLU_RS25670	0.52	-0.1
5,733,559	-		PFLU_RS25670	0.52	+2.1
5,733,559	-		PFLU_RS25670	0.52	-0.6
5,733,579	+		PFLU_RS25670	0.54	+0.6
5,733,579	+		PFLU_RS25670	0.54	-0.3
5,733,579	+		PFLU_RS25670	0.54	-2.1
5,733,580	-		PFLU_RS25670	0.54	-0.2
5,733,580	-		PFLU_RS25670	0.54	-0.7
5,733,606	+		PFLU_RS25670	0.55	-1.7
5,733,606	+		PFLU_RS25670	0.55	-0.1
5,733,606	+		PFLU_RS25670	0.55	-0.6
5,733,606	+		PFLU_RS25670	0.55	+0.9
5,733,606	+		PFLU_RS25670	0.55	-1.6
5,733,606	+		PFLU_RS25670	0.55	+0.8
5,733,606	+		PFLU_RS25670	0.55	-0.2
5,733,606	+		PFLU_RS25670	0.55	-1.0
5,733,606	+		PFLU_RS25670	0.55	+0.6
5,733,607	-		PFLU_RS25670	0.55	-0.5
5,733,607	-		PFLU_RS25670	0.55	-0.0
5,733,607	-		PFLU_RS25670	0.55	-1.1
5,733,607	-		PFLU_RS25670	0.55	+0.1
5,733,607	-		PFLU_RS25670	0.55	-0.5
5,733,607	-		PFLU_RS25670	0.55	-0.1
5,733,607	-		PFLU_RS25670	0.55	-0.7
5,733,607	-		PFLU_RS25670	0.55	-0.5
5,733,607	-		PFLU_RS25670	0.55	+0.0
5,733,607	-		PFLU_RS25670	0.55	-3.1
5,733,608	+		PFLU_RS25670	0.55	+0.5
5,733,608	+		PFLU_RS25670	0.55	-0.9
5,733,609	-		PFLU_RS25670	0.55	-1.7
5,733,609	-		PFLU_RS25670	0.55	-0.7
5,733,609	-		PFLU_RS25670	0.55	-1.3
5,733,615	+		PFLU_RS25670	0.56	-0.7
5,733,616	-		PFLU_RS25670	0.56	-2.0
5,733,628	+		PFLU_RS25670	0.57	-2.1
5,733,711	+		PFLU_RS25670	0.62	-0.3
5,733,712	-		PFLU_RS25670	0.62	-1.6
5,733,712	-		PFLU_RS25670	0.62	-0.5
5,733,732	+		PFLU_RS25670	0.63	+1.1
5,733,732	+		PFLU_RS25670	0.63	+1.4
5,733,732	+		PFLU_RS25670	0.63	-0.2
5,733,732	+		PFLU_RS25670	0.63	-0.2
5,733,732	+		PFLU_RS25670	0.63	+2.5
5,733,732	+		PFLU_RS25670	0.63	-1.2
5,733,732	+		PFLU_RS25670	0.63	-0.3
5,733,732	+		PFLU_RS25670	0.63	+1.6
5,733,732	+		PFLU_RS25670	0.63	-0.7
5,733,732	+		PFLU_RS25670	0.63	+0.9
5,733,732	+		PFLU_RS25670	0.63	+1.2
5,733,732	+		PFLU_RS25670	0.63	+0.1
5,733,732	+		PFLU_RS25670	0.63	+0.1
5,733,732	+		PFLU_RS25670	0.63	-0.3
5,733,732	+		PFLU_RS25670	0.63	-0.4
5,733,732	+		PFLU_RS25670	0.63	-1.6
5,733,733	-		PFLU_RS25670	0.63	-0.1
5,733,733	-		PFLU_RS25670	0.63	+0.5
5,733,733	-		PFLU_RS25670	0.63	+1.0
5,733,733	-		PFLU_RS25670	0.63	-1.5
5,733,733	-		PFLU_RS25670	0.63	-0.3
5,733,764	+		PFLU_RS25670	0.65	+1.9
5,733,764	+		PFLU_RS25670	0.65	-1.0
5,733,765	-		PFLU_RS25670	0.66	-0.6
5,733,765	-		PFLU_RS25670	0.66	-0.4
5,733,909	+		PFLU_RS25670	0.75	-0.6
5,733,909	+		PFLU_RS25670	0.75	-0.3
5,733,909	+		PFLU_RS25670	0.75	+0.6
5,733,909	+		PFLU_RS25670	0.75	+0.3
5,733,909	+		PFLU_RS25670	0.75	+1.3
5,733,909	+		PFLU_RS25670	0.75	+0.2
5,733,909	+		PFLU_RS25670	0.75	-2.8
5,733,909	+		PFLU_RS25670	0.75	+0.0
5,733,909	+		PFLU_RS25670	0.75	+0.5
5,733,910	-		PFLU_RS25670	0.75	-0.3
5,733,910	-		PFLU_RS25670	0.75	-1.8
5,733,910	-		PFLU_RS25670	0.75	+0.0
5,733,910	-		PFLU_RS25670	0.75	+1.5
5,733,910	-		PFLU_RS25670	0.75	-1.0
5,733,910	-		PFLU_RS25670	0.75	-1.0
5,733,910	-		PFLU_RS25670	0.75	+1.3
5,733,910	-		PFLU_RS25670	0.75	+0.6
5,733,936	+		PFLU_RS25670	0.76	-0.8
5,733,936	+		PFLU_RS25670	0.76	+1.2
5,733,936	+		PFLU_RS25670	0.76	+0.1
5,733,937	-		PFLU_RS25670	0.77	+0.4
5,733,937	-		PFLU_RS25670	0.77	+0.8
5,733,967	+		PFLU_RS25670	0.78	+0.7
5,734,043	-		PFLU_RS25670	0.83	-0.5
5,734,251	-				+0.7
5,734,251	-				+0.2
5,734,274	+				+0.6
5,734,275	-				-0.5
5,734,275	-				+0.0
5,734,299	+				+0.5
5,734,300	-				-0.0
5,734,300	-				-0.1
5,734,300	-				-0.9
5,734,326	+				+0.0
5,734,326	+				-0.5
5,734,327	-				+0.1
5,734,349	+				-0.3
5,734,359	-				+0.6
5,734,417	+				+0.3
5,734,417	+				-0.5
5,734,418	-				-0.2
5,734,418	-				-0.5
5,734,428	-				-0.2
5,734,441	+		PFLU_RS25675	0.14	-0.4
5,734,441	+		PFLU_RS25675	0.14	+0.6
5,734,442	-		PFLU_RS25675	0.14	-1.8
5,734,442	-		PFLU_RS25675	0.14	-1.8
5,734,568	+		PFLU_RS25675	0.50	+0.3
5,734,568	+		PFLU_RS25675	0.50	-0.8
5,734,568	+		PFLU_RS25675	0.50	+0.5
5,734,568	+		PFLU_RS25675	0.50	-0.3
5,734,568	+		PFLU_RS25675	0.50	-0.9
5,734,569	-		PFLU_RS25675	0.51	-1.2
5,734,569	-		PFLU_RS25675	0.51	-1.0
5,734,569	-		PFLU_RS25675	0.51	-0.9
5,734,569	-		PFLU_RS25675	0.51	-1.9
5,734,569	-		PFLU_RS25675	0.51	-0.4
5,734,569	-		PFLU_RS25675	0.51	+0.2
5,734,587	+		PFLU_RS25675	0.56	-1.8
5,734,587	+		PFLU_RS25675	0.56	+0.1
5,734,588	-		PFLU_RS25675	0.56	-0.9
5,734,658	+		PFLU_RS25675	0.77	-2.8
5,734,658	+		PFLU_RS25675	0.77	-1.5
5,734,658	+		PFLU_RS25675	0.77	-1.1
5,734,659	-		PFLU_RS25675	0.77	-2.2
5,734,659	-		PFLU_RS25675	0.77	-0.7
5,734,659	-		PFLU_RS25675	0.77	-1.8
5,734,659	-		PFLU_RS25675	0.77	-0.9
5,734,659	-		PFLU_RS25675	0.77	-1.5
5,734,659	-		PFLU_RS25675	0.77	-0.7
5,734,659	-		PFLU_RS25675	0.77	+0.5
5,734,659	-		PFLU_RS25675	0.77	-0.1
5,734,659	-		PFLU_RS25675	0.77	+1.9
5,734,737	-				-0.7
5,734,739	+				-0.6
5,734,739	+				+0.3
5,734,739	+				+0.6
5,734,740	-				-0.1
5,734,740	-				-1.8
5,734,740	-				+0.5
5,734,817	+				+0.7
5,734,817	+				+0.9
5,734,840	+				+0.1
5,734,840	+				+1.7
5,734,841	-				+0.1
5,734,841	-				+0.3
5,734,841	-				+1.3
5,734,861	+				+0.8
5,734,861	+				-1.6
5,735,090	+		PFLU_RS25680	0.59	+0.3
5,735,090	+		PFLU_RS25680	0.59	+1.0
5,735,090	+		PFLU_RS25680	0.59	+0.8
5,735,090	+		PFLU_RS25680	0.59	+0.5
5,735,090	+		PFLU_RS25680	0.59	+2.0
5,735,090	+		PFLU_RS25680	0.59	+0.4
5,735,091	-		PFLU_RS25680	0.60	-0.4
5,735,091	-		PFLU_RS25680	0.60	-2.7
5,735,091	-		PFLU_RS25680	0.60	+1.1
5,735,091	-		PFLU_RS25680	0.60	+0.7
5,735,091	-		PFLU_RS25680	0.60	-0.0
5,735,091	-		PFLU_RS25680	0.60	+0.8
5,735,091	-		PFLU_RS25680	0.60	+1.6
5,735,199	-				+0.2
5,735,223	+				-1.2
5,735,223	+				+0.5
5,735,223	+				-0.2
5,735,224	-				+0.2
5,735,224	-				+1.1
5,735,224	-				-1.2
5,735,224	-				+0.0