Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23305

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23300 and PFLU_RS23305 overlap by 4 nucleotidesPFLU_RS23305 and PFLU_RS23310 are separated by 51 nucleotides PFLU_RS23300: PFLU_RS23300 - succinylglutamate-semialdehyde dehydrogenase, at 5,230,033 to 5,231,499 _RS23300 PFLU_RS23305: PFLU_RS23305 - arginine N-succinyltransferase, at 5,231,496 to 5,232,524 _RS23305 PFLU_RS23310: PFLU_RS23310 - arginine/ornithine succinyltransferase subunit alpha, at 5,232,576 to 5,233,595 _RS23310 Position (kb) 5231 5232 5233Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5230.686 kb on + strand, within PFLU_RS23300at 5230.687 kb on - strand, within PFLU_RS23300at 5230.701 kb on + strand, within PFLU_RS23300at 5230.701 kb on + strand, within PFLU_RS23300at 5230.709 kb on + strand, within PFLU_RS23300at 5230.709 kb on + strand, within PFLU_RS23300at 5230.710 kb on - strand, within PFLU_RS23300at 5230.710 kb on - strand, within PFLU_RS23300at 5230.974 kb on + strand, within PFLU_RS23300at 5230.975 kb on - strand, within PFLU_RS23300at 5231.008 kb on - strand, within PFLU_RS23300at 5231.008 kb on - strand, within PFLU_RS23300at 5231.008 kb on - strand, within PFLU_RS23300at 5231.008 kb on - strand, within PFLU_RS23300at 5231.034 kb on + strand, within PFLU_RS23300at 5231.035 kb on - strand, within PFLU_RS23300at 5231.066 kb on + strand, within PFLU_RS23300at 5231.066 kb on + strand, within PFLU_RS23300at 5231.066 kb on + strand, within PFLU_RS23300at 5231.066 kb on + strand, within PFLU_RS23300at 5231.066 kb on + strand, within PFLU_RS23300at 5231.067 kb on - strand, within PFLU_RS23300at 5231.067 kb on - strand, within PFLU_RS23300at 5231.067 kb on - strand, within PFLU_RS23300at 5231.110 kb on + strand, within PFLU_RS23300at 5231.110 kb on + strand, within PFLU_RS23300at 5231.152 kb on - strand, within PFLU_RS23300at 5231.163 kb on - strand, within PFLU_RS23300at 5231.313 kb on + strand, within PFLU_RS23300at 5231.313 kb on + strand, within PFLU_RS23300at 5231.314 kb on - strand, within PFLU_RS23300at 5231.475 kb on + strandat 5231.476 kb on - strandat 5231.476 kb on - strandat 5231.476 kb on - strandat 5231.484 kb on + strandat 5231.484 kb on + strandat 5231.484 kb on + strandat 5231.486 kb on + strandat 5231.486 kb on + strandat 5231.486 kb on + strandat 5231.486 kb on + strandat 5231.486 kb on + strandat 5231.487 kb on - strandat 5231.487 kb on - strandat 5231.487 kb on - strandat 5231.487 kb on - strandat 5231.487 kb on - strandat 5231.487 kb on - strandat 5231.704 kb on - strand, within PFLU_RS23305at 5231.786 kb on - strand, within PFLU_RS23305at 5231.893 kb on + strand, within PFLU_RS23305at 5231.893 kb on + strand, within PFLU_RS23305at 5231.893 kb on + strand, within PFLU_RS23305at 5231.893 kb on + strand, within PFLU_RS23305at 5231.893 kb on + strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.894 kb on - strand, within PFLU_RS23305at 5231.953 kb on + strand, within PFLU_RS23305at 5232.089 kb on + strand, within PFLU_RS23305at 5232.089 kb on + strand, within PFLU_RS23305at 5232.093 kb on + strand, within PFLU_RS23305at 5232.093 kb on + strand, within PFLU_RS23305at 5232.093 kb on + strand, within PFLU_RS23305at 5232.093 kb on + strand, within PFLU_RS23305at 5232.094 kb on - strand, within PFLU_RS23305at 5232.094 kb on - strand, within PFLU_RS23305at 5232.094 kb on - strand, within PFLU_RS23305at 5232.094 kb on - strand, within PFLU_RS23305at 5232.221 kb on - strand, within PFLU_RS23305at 5232.271 kb on + strand, within PFLU_RS23305at 5232.271 kb on + strand, within PFLU_RS23305at 5232.271 kb on + strand, within PFLU_RS23305at 5232.271 kb on + strand, within PFLU_RS23305at 5232.272 kb on - strand, within PFLU_RS23305at 5232.272 kb on - strand, within PFLU_RS23305at 5232.355 kb on + strand, within PFLU_RS23305at 5232.356 kb on - strand, within PFLU_RS23305at 5232.356 kb on - strand, within PFLU_RS23305at 5232.508 kb on - strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.527 kb on + strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.528 kb on - strandat 5232.577 kb on + strandat 5232.667 kb on + strandat 5232.724 kb on + strand, within PFLU_RS23310at 5232.724 kb on + strand, within PFLU_RS23310at 5232.725 kb on - strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.847 kb on + strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.848 kb on - strand, within PFLU_RS23310at 5232.955 kb on + strand, within PFLU_RS23310at 5232.955 kb on + strand, within PFLU_RS23310at 5232.955 kb on + strand, within PFLU_RS23310at 5232.955 kb on + strand, within PFLU_RS23310at 5232.956 kb on - strand, within PFLU_RS23310at 5232.956 kb on - strand, within PFLU_RS23310at 5232.956 kb on - strand, within PFLU_RS23310at 5232.956 kb on - strand, within PFLU_RS23310at 5232.956 kb on - strand, within PFLU_RS23310at 5232.956 kb on - strand, within PFLU_RS23310at 5232.992 kb on + strand, within PFLU_RS23310at 5232.993 kb on - strand, within PFLU_RS23310at 5233.030 kb on + strand, within PFLU_RS23310at 5233.030 kb on + strand, within PFLU_RS23310at 5233.030 kb on + strand, within PFLU_RS23310at 5233.031 kb on - strand, within PFLU_RS23310at 5233.096 kb on + strand, within PFLU_RS23310at 5233.096 kb on + strand, within PFLU_RS23310at 5233.216 kb on + strand, within PFLU_RS23310at 5233.217 kb on - strand, within PFLU_RS23310at 5233.333 kb on + strand, within PFLU_RS23310at 5233.333 kb on + strand, within PFLU_RS23310at 5233.333 kb on + strand, within PFLU_RS23310at 5233.334 kb on - strand, within PFLU_RS23310at 5233.421 kb on - strand, within PFLU_RS23310at 5233.421 kb on - strand, within PFLU_RS23310at 5233.421 kb on - strand, within PFLU_RS23310at 5233.421 kb on - strand, within PFLU_RS23310at 5233.482 kb on - strand, within PFLU_RS23310

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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5,230,686 + PFLU_RS23300 0.45 -1.2
5,230,687 - PFLU_RS23300 0.45 +0.2
5,230,701 + PFLU_RS23300 0.46 -0.9
5,230,701 + PFLU_RS23300 0.46 -0.8
5,230,709 + PFLU_RS23300 0.46 -1.2
5,230,709 + PFLU_RS23300 0.46 -2.4
5,230,710 - PFLU_RS23300 0.46 -1.6
5,230,710 - PFLU_RS23300 0.46 +0.5
5,230,974 + PFLU_RS23300 0.64 -0.2
5,230,975 - PFLU_RS23300 0.64 +1.0
5,231,008 - PFLU_RS23300 0.66 +0.1
5,231,008 - PFLU_RS23300 0.66 +0.6
5,231,008 - PFLU_RS23300 0.66 +0.5
5,231,008 - PFLU_RS23300 0.66 -2.0
5,231,034 + PFLU_RS23300 0.68 -1.2
5,231,035 - PFLU_RS23300 0.68 +2.6
5,231,066 + PFLU_RS23300 0.70 -0.5
5,231,066 + PFLU_RS23300 0.70 -0.1
5,231,066 + PFLU_RS23300 0.70 -0.8
5,231,066 + PFLU_RS23300 0.70 -1.2
5,231,066 + PFLU_RS23300 0.70 -0.5
5,231,067 - PFLU_RS23300 0.70 -2.2
5,231,067 - PFLU_RS23300 0.70 +0.4
5,231,067 - PFLU_RS23300 0.70 -0.7
5,231,110 + PFLU_RS23300 0.73 -0.4
5,231,110 + PFLU_RS23300 0.73 +0.1
5,231,152 - PFLU_RS23300 0.76 +0.2
5,231,163 - PFLU_RS23300 0.77 +0.2
5,231,313 + PFLU_RS23300 0.87 -0.3
5,231,313 + PFLU_RS23300 0.87 -1.2
5,231,314 - PFLU_RS23300 0.87 +0.1
5,231,475 + -1.1
5,231,476 - +1.0
5,231,476 - +0.6
5,231,476 - +0.3
5,231,484 + +0.4
5,231,484 + -0.2
5,231,484 + -1.0
5,231,486 + +1.4
5,231,486 + +0.7
5,231,486 + +1.3
5,231,486 + -1.2
5,231,486 + -0.4
5,231,487 - -0.2
5,231,487 - -0.2
5,231,487 - +1.0
5,231,487 - +0.8
5,231,487 - -1.2
5,231,487 - +0.6
5,231,704 - PFLU_RS23305 0.20 -3.0
5,231,786 - PFLU_RS23305 0.28 -1.4
5,231,893 + PFLU_RS23305 0.39 -3.2
5,231,893 + PFLU_RS23305 0.39 -1.7
5,231,893 + PFLU_RS23305 0.39 -2.2
5,231,893 + PFLU_RS23305 0.39 -0.9
5,231,893 + PFLU_RS23305 0.39 -3.3
5,231,894 - PFLU_RS23305 0.39 -1.0
5,231,894 - PFLU_RS23305 0.39 -0.3
5,231,894 - PFLU_RS23305 0.39 -1.8
5,231,894 - PFLU_RS23305 0.39 -1.5
5,231,894 - PFLU_RS23305 0.39 -0.3
5,231,894 - PFLU_RS23305 0.39 -3.1
5,231,894 - PFLU_RS23305 0.39 -1.6
5,231,894 - PFLU_RS23305 0.39 -3.1
5,231,894 - PFLU_RS23305 0.39 -2.2
5,231,894 - PFLU_RS23305 0.39 -1.8
5,231,894 - PFLU_RS23305 0.39 -1.9
5,231,894 - PFLU_RS23305 0.39 -1.3
5,231,894 - PFLU_RS23305 0.39 -1.3
5,231,953 + PFLU_RS23305 0.44 -2.2
5,232,089 + PFLU_RS23305 0.58 -1.7
5,232,089 + PFLU_RS23305 0.58 -1.2
5,232,093 + PFLU_RS23305 0.58 -0.4
5,232,093 + PFLU_RS23305 0.58 -2.0
5,232,093 + PFLU_RS23305 0.58 -1.6
5,232,093 + PFLU_RS23305 0.58 -2.0
5,232,094 - PFLU_RS23305 0.58 -0.5
5,232,094 - PFLU_RS23305 0.58 -3.2
5,232,094 - PFLU_RS23305 0.58 -1.6
5,232,094 - PFLU_RS23305 0.58 -1.7
5,232,221 - PFLU_RS23305 0.70 -1.0
5,232,271 + PFLU_RS23305 0.75 -0.3
5,232,271 + PFLU_RS23305 0.75 -2.3
5,232,271 + PFLU_RS23305 0.75 -1.0
5,232,271 + PFLU_RS23305 0.75 -1.2
5,232,272 - PFLU_RS23305 0.75 -1.7
5,232,272 - PFLU_RS23305 0.75 -1.3
5,232,355 + PFLU_RS23305 0.83 -1.3
5,232,356 - PFLU_RS23305 0.84 -1.2
5,232,356 - PFLU_RS23305 0.84 -2.3
5,232,508 - -0.7
5,232,527 + -1.5
5,232,527 + +1.4
5,232,527 + -2.3
5,232,527 + -1.0
5,232,527 + -2.2
5,232,527 + -0.2
5,232,527 + -2.7
5,232,527 + -0.6
5,232,527 + -1.6
5,232,527 + -2.9
5,232,528 - -1.2
5,232,528 - -1.5
5,232,528 - -1.0
5,232,528 - -1.1
5,232,528 - -1.7
5,232,528 - +0.4
5,232,528 - -2.3
5,232,528 - -2.1
5,232,577 + +0.2
5,232,667 + -0.8
5,232,724 + PFLU_RS23310 0.15 -1.8
5,232,724 + PFLU_RS23310 0.15 -1.0
5,232,725 - PFLU_RS23310 0.15 -2.4
5,232,847 + PFLU_RS23310 0.27 -0.3
5,232,847 + PFLU_RS23310 0.27 -2.5
5,232,847 + PFLU_RS23310 0.27 -1.3
5,232,847 + PFLU_RS23310 0.27 -1.3
5,232,847 + PFLU_RS23310 0.27 -2.9
5,232,847 + PFLU_RS23310 0.27 -2.8
5,232,847 + PFLU_RS23310 0.27 -1.8
5,232,847 + PFLU_RS23310 0.27 -2.6
5,232,847 + PFLU_RS23310 0.27 -0.8
5,232,848 - PFLU_RS23310 0.27 -2.5
5,232,848 - PFLU_RS23310 0.27 -1.5
5,232,848 - PFLU_RS23310 0.27 -2.6
5,232,848 - PFLU_RS23310 0.27 -3.4
5,232,848 - PFLU_RS23310 0.27 -2.3
5,232,848 - PFLU_RS23310 0.27 -1.5
5,232,848 - PFLU_RS23310 0.27 -2.4
5,232,848 - PFLU_RS23310 0.27 -2.9
5,232,848 - PFLU_RS23310 0.27 -3.9
5,232,955 + PFLU_RS23310 0.37 -3.1
5,232,955 + PFLU_RS23310 0.37 -2.5
5,232,955 + PFLU_RS23310 0.37 -0.8
5,232,955 + PFLU_RS23310 0.37 +0.2
5,232,956 - PFLU_RS23310 0.37 -2.5
5,232,956 - PFLU_RS23310 0.37 -0.6
5,232,956 - PFLU_RS23310 0.37 -2.4
5,232,956 - PFLU_RS23310 0.37 -1.5
5,232,956 - PFLU_RS23310 0.37 -2.7
5,232,956 - PFLU_RS23310 0.37 -1.5
5,232,992 + PFLU_RS23310 0.41 -2.6
5,232,993 - PFLU_RS23310 0.41 -2.6
5,233,030 + PFLU_RS23310 0.45 -3.0
5,233,030 + PFLU_RS23310 0.45 -3.1
5,233,030 + PFLU_RS23310 0.45 -1.0
5,233,031 - PFLU_RS23310 0.45 -0.3
5,233,096 + PFLU_RS23310 0.51 -2.1
5,233,096 + PFLU_RS23310 0.51 -2.0
5,233,216 + PFLU_RS23310 0.63 -0.8
5,233,217 - PFLU_RS23310 0.63 -2.3
5,233,333 + PFLU_RS23310 0.74 -3.1
5,233,333 + PFLU_RS23310 0.74 -1.2
5,233,333 + PFLU_RS23310 0.74 -1.5
5,233,334 - PFLU_RS23310 0.74 -1.6
5,233,421 - PFLU_RS23310 0.83 -2.0
5,233,421 - PFLU_RS23310 0.83 -1.4
5,233,421 - PFLU_RS23310 0.83 -1.8
5,233,421 - PFLU_RS23310 0.83 -1.6
5,233,482 - PFLU_RS23310 0.89 -1.2

Or see this region's nucleotide sequence