Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS22135

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,979,218	+		PFLU_RS22130	0.49	+0.6
4,979,218	+		PFLU_RS22130	0.49	-1.0
4,979,218	+		PFLU_RS22130	0.49	-0.8
4,979,218	+		PFLU_RS22130	0.49	-0.2
4,979,218	+		PFLU_RS22130	0.49	+0.7
4,979,218	+		PFLU_RS22130	0.49	+0.0
4,979,219	-		PFLU_RS22130	0.49	-0.4
4,979,219	-		PFLU_RS22130	0.49	-0.6
4,979,344	+		PFLU_RS22130	0.58	+0.0
4,979,344	+		PFLU_RS22130	0.58	+0.1
4,979,344	+		PFLU_RS22130	0.58	-0.9
4,979,344	+		PFLU_RS22130	0.58	+0.1
4,979,345	-		PFLU_RS22130	0.58	-0.1
4,979,345	-		PFLU_RS22130	0.58	-0.4
4,979,345	-		PFLU_RS22130	0.58	-0.2
4,979,345	-		PFLU_RS22130	0.58	+0.5
4,979,345	-		PFLU_RS22130	0.58	-1.3
4,979,345	-		PFLU_RS22130	0.58	+0.1
4,979,345	-		PFLU_RS22130	0.58	+1.3
4,979,345	-		PFLU_RS22130	0.58	+0.4
4,979,358	+		PFLU_RS22130	0.59	-0.1
4,979,358	+		PFLU_RS22130	0.59	-0.1
4,979,358	+		PFLU_RS22130	0.59	+0.4
4,979,358	+		PFLU_RS22130	0.59	-0.1
4,979,358	+		PFLU_RS22130	0.59	+1.4
4,979,358	+		PFLU_RS22130	0.59	-0.3
4,979,358	+		PFLU_RS22130	0.59	+0.4
4,979,358	+		PFLU_RS22130	0.59	+0.7
4,979,358	+		PFLU_RS22130	0.59	-0.0
4,979,359	-		PFLU_RS22130	0.59	+0.3
4,979,359	-		PFLU_RS22130	0.59	+0.1
4,979,359	-		PFLU_RS22130	0.59	+0.9
4,979,359	-		PFLU_RS22130	0.59	+0.5
4,979,362	+		PFLU_RS22130	0.59	+0.3
4,979,362	+		PFLU_RS22130	0.59	-2.3
4,979,362	+		PFLU_RS22130	0.59	+0.2
4,979,362	+		PFLU_RS22130	0.59	+1.1
4,979,362	+		PFLU_RS22130	0.59	-0.6
4,979,362	+		PFLU_RS22130	0.59	+1.4
4,979,362	+		PFLU_RS22130	0.59	-0.9
4,979,362	+		PFLU_RS22130	0.59	+1.4
4,979,362	+		PFLU_RS22130	0.59	+0.3
4,979,362	+		PFLU_RS22130	0.59	+0.7
4,979,362	+		PFLU_RS22130	0.59	+0.1
4,979,362	+		PFLU_RS22130	0.59	-0.0
4,979,362	+		PFLU_RS22130	0.59	-0.4
4,979,362	+		PFLU_RS22130	0.59	-0.2
4,979,362	+		PFLU_RS22130	0.59	-0.8
4,979,362	+		PFLU_RS22130	0.59	+1.7
4,979,362	+		PFLU_RS22130	0.59	+1.1
4,979,362	+		PFLU_RS22130	0.59	+0.5
4,979,362	+		PFLU_RS22130	0.59	+2.4
4,979,362	+		PFLU_RS22130	0.59	+0.4
4,979,362	+		PFLU_RS22130	0.59	+0.5
4,979,362	+		PFLU_RS22130	0.59	+0.8
4,979,363	-		PFLU_RS22130	0.59	+0.9
4,979,363	-		PFLU_RS22130	0.59	-0.2
4,979,363	-		PFLU_RS22130	0.59	-1.5
4,979,363	-		PFLU_RS22130	0.59	-0.9
4,979,363	-		PFLU_RS22130	0.59	-0.1
4,979,363	-		PFLU_RS22130	0.59	+0.1
4,979,363	-		PFLU_RS22130	0.59	-1.0
4,979,363	-		PFLU_RS22130	0.59	-1.4
4,979,363	-		PFLU_RS22130	0.59	-0.6
4,979,363	-		PFLU_RS22130	0.59	-0.4
4,979,363	-		PFLU_RS22130	0.59	+1.3
4,979,363	-		PFLU_RS22130	0.59	+1.2
4,979,363	-		PFLU_RS22130	0.59	-0.2
4,979,363	-		PFLU_RS22130	0.59	+0.1
4,979,363	-		PFLU_RS22130	0.59	+0.4
4,979,363	-		PFLU_RS22130	0.59	-0.5
4,979,363	-		PFLU_RS22130	0.59	-2.5
4,979,363	-		PFLU_RS22130	0.59	+1.0
4,979,363	-		PFLU_RS22130	0.59	-0.6
4,979,363	-		PFLU_RS22130	0.59	+1.4
4,979,363	-		PFLU_RS22130	0.59	+1.6
4,979,461	+		PFLU_RS22130	0.66	+0.1
4,979,461	+		PFLU_RS22130	0.66	+1.1
4,979,461	+		PFLU_RS22130	0.66	+0.5
4,979,461	+		PFLU_RS22130	0.66	-0.1
4,979,461	+		PFLU_RS22130	0.66	+0.9
4,979,461	+		PFLU_RS22130	0.66	+0.4
4,979,461	+		PFLU_RS22130	0.66	+1.1
4,979,462	-		PFLU_RS22130	0.66	+0.5
4,979,462	-		PFLU_RS22130	0.66	+0.1
4,979,560	-		PFLU_RS22130	0.73	+1.0
4,979,680	+		PFLU_RS22130	0.81	+0.3
4,979,680	+		PFLU_RS22130	0.81	+1.1
4,979,681	-		PFLU_RS22130	0.81	+0.6
4,979,681	-		PFLU_RS22130	0.81	+1.1
4,979,681	-		PFLU_RS22130	0.81	-0.5
4,979,681	-		PFLU_RS22130	0.81	-0.9
4,979,902	+				+1.0
4,979,903	-				-1.3
4,979,903	-				+0.5
4,980,098	+				+1.2
4,980,099	-				+0.2
4,980,130	+				-1.3
4,980,131	-				+0.1
4,980,131	-				-1.7
4,980,139	+				-0.1
4,980,140	-				+0.5
4,980,147	+				+0.1
4,980,147	+				+1.7
4,980,147	+				-0.1
4,980,147	+				-1.9
4,980,148	-				+0.6
4,980,148	-				+0.7
4,980,148	-				+0.6
4,980,175	-				-0.5
4,980,227	+				+0.9
4,980,227	+				-0.1
4,980,227	+				+0.7
4,980,228	-				+0.3
4,980,228	-				-0.9
4,980,228	-				-0.1
4,980,246	+				-0.1
4,980,246	+				-0.8
4,980,246	+				-0.2
4,980,246	+				+1.0
4,980,246	+				-0.7
4,980,247	-				+0.8
4,980,247	-				+0.4
4,980,287	+		PFLU_RS22135	0.12	-0.4
4,980,312	+		PFLU_RS22135	0.14	+0.4
4,980,312	+		PFLU_RS22135	0.14	+1.2
4,980,312	+		PFLU_RS22135	0.14	-0.2
4,980,312	+		PFLU_RS22135	0.14	+0.1
4,980,312	+		PFLU_RS22135	0.14	-0.0
4,980,312	+		PFLU_RS22135	0.14	+0.2
4,980,313	-		PFLU_RS22135	0.14	+0.2
4,980,313	-		PFLU_RS22135	0.14	+0.3
4,980,313	-		PFLU_RS22135	0.14	-0.5
4,980,444	+		PFLU_RS22135	0.24	-0.9
4,980,444	+		PFLU_RS22135	0.24	-0.1
4,980,445	-		PFLU_RS22135	0.24	-0.1
4,980,445	-		PFLU_RS22135	0.24	+0.4
4,980,445	-		PFLU_RS22135	0.24	-1.1
4,980,445	-		PFLU_RS22135	0.24	-0.4
4,980,603	+		PFLU_RS22135	0.35	+0.3
4,980,603	+		PFLU_RS22135	0.35	-1.6
4,980,603	+		PFLU_RS22135	0.35	+1.7
4,980,604	-		PFLU_RS22135	0.35	-1.7
4,980,604	-		PFLU_RS22135	0.35	-1.6
4,980,604	-		PFLU_RS22135	0.35	-0.6
4,980,604	-		PFLU_RS22135	0.35	-1.5
4,980,604	-		PFLU_RS22135	0.35	-0.2
4,980,683	+		PFLU_RS22135	0.41	-0.9
4,980,683	+		PFLU_RS22135	0.41	-1.2
4,980,684	-		PFLU_RS22135	0.41	-0.2
4,980,705	+		PFLU_RS22135	0.43	-0.2
4,980,795	+		PFLU_RS22135	0.49	+0.1
4,980,795	+		PFLU_RS22135	0.49	+1.4
4,980,795	+		PFLU_RS22135	0.49	-0.1
4,980,795	+		PFLU_RS22135	0.49	+0.1
4,980,795	+		PFLU_RS22135	0.49	+0.9
4,980,795	+		PFLU_RS22135	0.49	-0.4
4,980,796	-		PFLU_RS22135	0.49	+0.5
4,980,796	-		PFLU_RS22135	0.49	+0.6
4,980,796	-		PFLU_RS22135	0.49	+1.7
4,980,796	-		PFLU_RS22135	0.49	+2.1
4,980,796	-		PFLU_RS22135	0.49	-0.9
4,980,796	-		PFLU_RS22135	0.49	+0.7
4,980,796	-		PFLU_RS22135	0.49	+0.9
4,980,796	-		PFLU_RS22135	0.49	-0.2
4,980,796	-		PFLU_RS22135	0.49	-1.4
4,980,796	-		PFLU_RS22135	0.49	-0.1
4,980,796	-		PFLU_RS22135	0.49	-0.4
4,980,796	-		PFLU_RS22135	0.49	-0.2
4,980,796	-		PFLU_RS22135	0.49	-0.1
4,980,796	-		PFLU_RS22135	0.49	+0.5
4,980,807	+		PFLU_RS22135	0.50	+0.7
4,980,807	+		PFLU_RS22135	0.50	+0.4
4,980,807	+		PFLU_RS22135	0.50	-0.6
4,980,807	+		PFLU_RS22135	0.50	+0.4
4,980,807	+		PFLU_RS22135	0.50	+1.1
4,980,807	+		PFLU_RS22135	0.50	-0.4
4,980,807	+		PFLU_RS22135	0.50	+0.4
4,980,808	-		PFLU_RS22135	0.50	+0.7
4,980,808	-		PFLU_RS22135	0.50	-0.4
4,980,808	-		PFLU_RS22135	0.50	+0.8
4,980,808	-		PFLU_RS22135	0.50	-0.3
4,980,808	-		PFLU_RS22135	0.50	+0.1
4,980,836	+		PFLU_RS22135	0.52	-0.1
4,980,836	+		PFLU_RS22135	0.52	+0.1
4,980,882	+		PFLU_RS22135	0.55	+0.5
4,980,882	+		PFLU_RS22135	0.55	+0.4
4,980,882	+		PFLU_RS22135	0.55	+2.0
4,980,882	+		PFLU_RS22135	0.55	-1.1
4,980,882	+		PFLU_RS22135	0.55	+0.4
4,980,882	+		PFLU_RS22135	0.55	-2.0
4,980,882	+		PFLU_RS22135	0.55	+1.2
4,980,882	+		PFLU_RS22135	0.55	+1.7
4,980,883	-		PFLU_RS22135	0.55	+2.3
4,980,883	-		PFLU_RS22135	0.55	-0.9
4,980,883	-		PFLU_RS22135	0.55	+0.7
4,980,883	-		PFLU_RS22135	0.55	+1.7
4,980,883	-		PFLU_RS22135	0.55	-0.5
4,980,906	+		PFLU_RS22135	0.57	-0.2
4,980,907	-		PFLU_RS22135	0.57	+0.7
4,980,918	+		PFLU_RS22135	0.58	-0.4
4,981,178	+		PFLU_RS22135	0.77	+0.1
4,981,178	+		PFLU_RS22135	0.77	-0.3
4,981,179	-		PFLU_RS22135	0.77	-0.3
4,981,179	-		PFLU_RS22135	0.77	-0.4
4,981,179	-		PFLU_RS22135	0.77	-1.4
4,981,254	+		PFLU_RS22135	0.82	+1.0
4,981,254	+		PFLU_RS22135	0.82	+0.1
4,981,254	+		PFLU_RS22135	0.82	-0.1
4,981,254	+		PFLU_RS22135	0.82	+0.2
4,981,254	+		PFLU_RS22135	0.82	+1.5
4,981,254	+		PFLU_RS22135	0.82	+0.2
4,981,255	-		PFLU_RS22135	0.82	+0.3
4,981,255	-		PFLU_RS22135	0.82	+0.7
4,981,255	-		PFLU_RS22135	0.82	+0.3
4,981,255	-		PFLU_RS22135	0.82	+0.8
4,981,255	-		PFLU_RS22135	0.82	-1.1
4,981,255	-		PFLU_RS22135	0.82	+1.1
4,981,255	-		PFLU_RS22135	0.82	-0.1
4,981,274	+		PFLU_RS22135	0.84	-1.0
4,981,274	+		PFLU_RS22135	0.84	+1.0
4,981,274	+		PFLU_RS22135	0.84	-1.3
4,981,275	-		PFLU_RS22135	0.84	+0.6
4,981,275	-		PFLU_RS22135	0.84	-0.4
4,981,275	-		PFLU_RS22135	0.84	+0.2
4,981,275	-		PFLU_RS22135	0.84	-0.5
4,981,275	-		PFLU_RS22135	0.84	-0.0
4,981,373	+				+0.6
4,981,373	+				+1.4
4,981,374	-				+0.1
4,981,374	-				+0.1
4,981,374	-				-0.2
4,981,410	+				+1.0
4,981,410	+				+0.7
4,981,410	+				-0.9
4,981,410	+				+0.7
4,981,411	-				-0.6
4,981,413	+				+0.2
4,981,413	+				-0.2
4,981,414	-				-0.0
4,981,414	-				-0.4
4,981,414	-				-1.3
4,981,414	-				+0.7
4,981,414	-				+0.8
4,981,574	+				+1.3
4,981,575	-				+1.3
4,981,623	-		PFLU_RS22140	0.12	-0.6
4,981,698	-		PFLU_RS22140	0.30	+0.2
4,981,718	+		PFLU_RS22140	0.35	+0.4
4,981,718	+		PFLU_RS22140	0.35	-0.9
4,981,718	+		PFLU_RS22140	0.35	-1.2
4,981,719	-		PFLU_RS22140	0.35	+0.0
4,981,719	-		PFLU_RS22140	0.35	+0.6
4,981,719	-		PFLU_RS22140	0.35	-1.1
4,981,719	-		PFLU_RS22140	0.35	-0.4
4,981,719	-		PFLU_RS22140	0.35	-1.3
4,981,719	-		PFLU_RS22140	0.35	-0.3
4,981,765	-		PFLU_RS22140	0.46	-1.1
4,981,792	+		PFLU_RS22140	0.53	+0.6
4,981,793	-		PFLU_RS22140	0.53	+0.2
4,981,793	-		PFLU_RS22140	0.53	+0.8
4,981,910	-		PFLU_RS22140	0.81	+0.7
4,981,981	-				+0.8
4,982,048	-				-0.8
4,982,089	+				+0.1
4,982,090	-				+0.9
4,982,229	+				-0.2
4,982,230	-				+0.8
4,982,238	+				-1.7
4,982,239	-				-1.0
4,982,265	-				+1.0
4,982,265	-				+1.5
4,982,272	+				-0.3
4,982,272	+				+1.0
4,982,272	+				+1.5
4,982,272	+				+0.1
4,982,272	+				+0.7
4,982,272	+				-0.5
4,982,272	+				+1.0
4,982,273	-				+1.0
4,982,273	-				+2.2
4,982,273	-				-0.3
4,982,273	-				+1.6
4,982,273	-				+0.9
4,982,273	-				+1.0
4,982,273	-				-0.4
4,982,273	-				+0.2
4,982,273	-				-1.2
4,982,273	-				+1.1
4,982,275	+				+0.7
4,982,276	-				+0.2
4,982,276	-				+0.6
4,982,281	+				-0.0
4,982,281	+				-0.3
4,982,282	-				-1.1
4,982,282	-				+0.7
4,982,282	-				+0.6
4,982,282	-				+0.4
4,982,282	-				+1.4
4,982,288	+				-1.7
4,982,288	+				-1.1
4,982,288	+				+0.2
4,982,288	+				+0.0
4,982,288	+				-0.5
4,982,288	+				-1.1
4,982,289	-				-0.6
4,982,292	+				+1.4
4,982,292	+				-0.4
4,982,292	+				-2.7
4,982,292	+				-0.6
4,982,292	+				+1.0
4,982,292	+				-1.4
4,982,292	+				-0.7
4,982,292	+				-0.3
4,982,292	+				-1.6
4,982,292	+				-1.2
4,982,293	-				-0.3
4,982,293	-				-0.9
4,982,293	-				+1.6
4,982,293	-				+1.0
4,982,293	-				-0.9
4,982,293	-				-0.4
4,982,293	-				+0.2
4,982,293	-				-2.1
4,982,319	+				+1.5
4,982,319	+				+0.2
4,982,319	+				-0.4
4,982,319	+				+1.9
4,982,319	+				-1.6
4,982,319	+				-0.1
4,982,320	-				-1.1
4,982,320	-				+2.7
4,982,439	+				+0.8
4,982,439	+				-0.4
4,982,439	+				-0.1