Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS21735

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,893,029	-		PFLU_RS21725	0.80	+2.2
4,893,115	-		PFLU_RS21725	0.88	+0.5
4,893,155	+				+0.6
4,893,237	+				+0.8
4,893,237	+				+1.9
4,893,238	-				+0.3
4,893,238	-				+0.4
4,893,253	+				-0.6
4,893,253	+				+1.2
4,893,254	-				-0.5
4,893,421	+		PFLU_RS21730	0.37	+0.5
4,893,421	+		PFLU_RS21730	0.37	-0.4
4,893,421	+		PFLU_RS21730	0.37	-0.1
4,893,421	+		PFLU_RS21730	0.37	-0.3
4,893,422	-		PFLU_RS21730	0.37	-0.0
4,893,422	-		PFLU_RS21730	0.37	+0.5
4,893,422	-		PFLU_RS21730	0.37	+1.1
4,893,422	-		PFLU_RS21730	0.37	-1.4
4,893,422	-		PFLU_RS21730	0.37	-0.2
4,893,422	-		PFLU_RS21730	0.37	-0.9
4,893,422	-		PFLU_RS21730	0.37	+0.6
4,893,422	-		PFLU_RS21730	0.37	-0.1
4,893,422	-		PFLU_RS21730	0.37	-0.2
4,893,618	+		PFLU_RS21730	0.76	-0.2
4,893,618	+		PFLU_RS21730	0.76	-0.6
4,893,618	+		PFLU_RS21730	0.76	+0.8
4,893,618	+		PFLU_RS21730	0.76	+0.6
4,893,619	-		PFLU_RS21730	0.76	+0.7
4,893,619	-		PFLU_RS21730	0.76	-0.2
4,893,619	-		PFLU_RS21730	0.76	-0.6
4,893,668	+		PFLU_RS21730	0.86	+1.1
4,893,668	+		PFLU_RS21730	0.86	+1.4
4,893,669	-		PFLU_RS21730	0.86	+1.2
4,893,669	-		PFLU_RS21730	0.86	+0.4
4,893,669	-		PFLU_RS21730	0.86	-1.0
4,893,679	+		PFLU_RS21730	0.88	+0.9
4,893,679	+		PFLU_RS21730	0.88	-0.1
4,893,679	+		PFLU_RS21730	0.88	+1.0
4,893,680	-		PFLU_RS21730	0.89	+0.8
4,893,691	+				+0.8
4,893,691	+				+0.2
4,893,691	+				+1.1
4,893,691	+				+0.3
4,893,692	-				+1.6
4,893,692	-				-0.1
4,893,692	-				+0.4
4,893,767	+				+0.8
4,893,767	+				+0.0
4,893,767	+				+0.2
4,893,767	+				+1.0
4,893,767	+				+1.9
4,893,768	-				+0.6
4,893,768	-				+0.9
4,893,768	-				-1.5
4,893,768	-				-0.5
4,893,768	-				+2.0
4,893,773	+				-0.2
4,893,774	-				-1.9
4,893,774	-				+0.2
4,893,774	-				-0.7
4,893,825	+				+0.5
4,893,825	+				-0.5
4,893,826	-				+1.3
4,893,826	-				-1.3
4,893,877	+				+1.1
4,893,877	+				-0.4
4,893,877	+				+1.0
4,893,877	+				-0.3
4,893,878	-				+0.2
4,893,878	-				+0.1
4,893,878	-				+0.7
4,893,878	-				+1.1
4,893,965	+				-0.5
4,893,965	+				+1.0
4,893,965	+				+0.7
4,893,965	+				+2.5
4,893,965	+				-0.8
4,893,966	-				+1.3
4,893,966	-				+1.1
4,893,966	-				+0.7
4,893,966	-				+1.5
4,893,966	-				+0.9
4,893,968	+				+0.7
4,893,968	+				+1.6
4,893,968	+				+0.7
4,893,968	+				+1.2
4,893,968	+				+0.3
4,893,969	-				+0.7
4,893,969	-				+1.2
4,894,352	+		PFLU_RS21735	0.29	+1.2
4,894,352	+		PFLU_RS21735	0.29	+1.2
4,894,352	+		PFLU_RS21735	0.29	+1.1
4,894,352	+		PFLU_RS21735	0.29	-0.3
4,894,352	+		PFLU_RS21735	0.29	+1.2
4,894,352	+		PFLU_RS21735	0.29	-0.2
4,894,352	+		PFLU_RS21735	0.29	+1.2
4,894,352	+		PFLU_RS21735	0.29	-0.4
4,894,353	-		PFLU_RS21735	0.29	+1.7
4,894,353	-		PFLU_RS21735	0.29	+1.2
4,894,353	-		PFLU_RS21735	0.29	+2.0
4,894,353	-		PFLU_RS21735	0.29	+1.3
4,894,353	-		PFLU_RS21735	0.29	+0.7
4,894,353	-		PFLU_RS21735	0.29	+0.0
4,894,353	-		PFLU_RS21735	0.29	+1.2
4,894,353	-		PFLU_RS21735	0.29	+1.6
4,894,353	-		PFLU_RS21735	0.29	+2.3
4,894,353	-		PFLU_RS21735	0.29	+1.7
4,894,353	-		PFLU_RS21735	0.29	+1.5
4,894,353	-		PFLU_RS21735	0.29	+1.0
4,894,353	-		PFLU_RS21735	0.29	+0.7
4,894,353	-		PFLU_RS21735	0.29	-0.4
4,894,353	-		PFLU_RS21735	0.29	+0.7
4,894,353	-		PFLU_RS21735	0.29	+0.6
4,894,353	-		PFLU_RS21735	0.29	+2.4
4,894,353	-		PFLU_RS21735	0.29	+1.1
4,894,527	+		PFLU_RS21735	0.42	+2.0
4,894,528	-		PFLU_RS21735	0.43	+1.0
4,894,608	+		PFLU_RS21735	0.48	+0.7
4,894,608	+		PFLU_RS21735	0.48	+0.2
4,894,609	-		PFLU_RS21735	0.49	+0.6
4,895,025	+		PFLU_RS21735	0.80	+0.1
4,895,025	+		PFLU_RS21735	0.80	+1.1
4,895,025	+		PFLU_RS21735	0.80	+0.8
4,895,025	+		PFLU_RS21735	0.80	+1.1
4,895,025	+		PFLU_RS21735	0.80	+0.4
4,895,025	+		PFLU_RS21735	0.80	-0.1
4,895,298	+				+0.1
4,895,298	+				+1.0
4,895,298	+				+0.7
4,895,298	+				+1.7
4,895,298	+				+0.9
4,895,298	+				-0.1
4,895,298	+				-2.4
4,895,298	+				+1.5
4,895,299	-				-0.3
4,895,299	-				-0.1
4,895,299	-				+1.1
4,895,302	+				-0.1
4,895,302	+				+0.3
4,895,302	+				+0.4
4,895,302	+				+0.6
4,895,302	+				-0.6
4,895,302	+				+0.5
4,895,302	+				+0.5
4,895,302	+				-0.8
4,895,302	+				+2.4
4,895,302	+				+1.1
4,895,302	+				+0.8
4,895,302	+				+0.0
4,895,302	+				+0.1
4,895,302	+				+1.4
4,895,303	-				-0.3
4,895,303	-				-0.1
4,895,303	-				+0.2
4,895,303	-				-0.2
4,895,303	-				-0.8
4,895,303	-				-0.6
4,895,303	-				-2.7
4,895,303	-				-2.1
4,895,303	-				+0.1
4,895,303	-				-1.1
4,895,303	-				-0.3
4,895,337	+				-0.1
4,895,337	+				-0.2
4,895,337	+				+0.2
4,895,338	-				+0.7
4,895,338	-				+0.0
4,895,338	-				-0.3
4,895,341	+				+0.3
4,895,342	-				-0.9
4,895,347	+				+0.0
4,895,347	+				+0.2
4,895,348	-				-2.4
4,895,378	-				-1.1
4,895,383	+				-2.4
4,895,384	-				-0.5
4,895,473	+				+1.0
4,895,473	+				-0.6
4,895,473	+				-1.4
4,895,473	+				-0.9
4,895,473	+				+0.5
4,895,473	+				-0.3
4,895,474	-				+0.4
4,895,474	-				+1.1
4,895,474	-				-0.6
4,895,474	-				-0.3
4,895,474	-				-0.4
4,895,474	-				-0.6
4,895,474	-				+0.3
4,895,474	-				+0.2
4,895,474	-				+2.1
4,895,486	-				+0.3
4,895,486	-				-1.6
4,895,486	-				-0.5
4,895,486	-				+0.3
4,895,489	+				-0.0
4,895,489	+				+1.0
4,895,489	+				-0.1
4,895,489	+				-1.8
4,895,489	+				+2.4
4,895,489	+				+0.5
4,895,490	-				+1.8
4,895,490	-				+0.7
4,895,490	-				-0.3
4,895,490	-				-0.9
4,895,526	+				-0.3
4,895,526	+				-2.3
4,895,527	-				+0.2
4,895,527	-				+0.5
4,895,544	-				-0.6
4,895,544	-				+0.4
4,895,544	-				+0.6
4,895,544	-				-0.2
4,895,547	-				+0.1
4,895,547	-				+1.4
4,895,547	-				-0.9
4,895,547	-				-0.3
4,895,547	-				+1.1
4,895,547	-				+0.5
4,895,547	-				+1.4
4,895,547	-				+2.6
4,895,547	-				-0.6
4,895,547	-				+0.3
4,895,596	+				+0.7
4,895,612	+				+0.6
4,895,612	+				+0.3
4,895,612	+				+0.1
4,895,612	+				-1.5
4,895,645	+				-0.1
4,895,645	+				-0.2
4,895,645	+				-0.1
4,895,645	+				+0.0
4,895,646	-				+0.7
4,895,660	+				+0.2
4,895,660	+				+1.5
4,895,661	-				-1.0
4,895,661	-				+0.4
4,895,686	+				-0.3
4,895,686	+				+0.8
4,895,687	-				+0.2
4,895,687	-				+0.5
4,895,690	+				-0.2
4,895,690	+				+1.5
4,895,690	+				-0.1
4,895,690	+				-0.1
4,895,690	+				+1.2
4,895,690	+				-1.1
4,895,690	+				-0.0
4,895,690	+				+1.7
4,895,690	+				-0.2
4,895,690	+				-0.5
4,895,690	+				-0.0
4,895,690	+				+0.1
4,895,690	+				-0.4
4,895,690	+				-0.8
4,895,690	+				-0.5
4,895,690	+				+0.9
4,895,690	+				+2.5
4,895,690	+				-1.2
4,895,690	+				+0.5
4,895,690	+				-0.5
4,895,690	+				+1.1
4,895,690	+				+0.0
4,895,690	+				+0.8
4,895,690	+				+1.9
4,895,690	+				-0.8
4,895,690	+				+0.3
4,895,690	+				-0.6
4,895,690	+				-1.4
4,895,690	+				-0.1
4,895,690	+				-1.1
4,895,690	+				-0.4
4,895,690	+				+1.1
4,895,690	+				+0.9
4,895,690	+				-0.1
4,895,690	+				-0.1
4,895,690	+				-0.8
4,895,690	+				+0.2
4,895,690	+				+1.5
4,895,690	+				-0.4
4,895,691	-				-0.3
4,895,691	-				-0.2
4,895,691	-				+0.4
4,895,691	-				-2.4
4,895,691	-				-1.2
4,895,691	-				-0.1
4,895,691	-				-1.3
4,895,691	-				+0.9
4,895,691	-				-0.3
4,895,691	-				+0.3
4,895,691	-				+0.9
4,895,691	-				-0.0
4,895,691	-				+0.4
4,895,691	-				+0.3
4,895,691	-				+0.4
4,895,691	-				-0.9
4,895,691	-				+0.7
4,895,691	-				+0.1
4,895,691	-				-0.2
4,895,691	-				+0.3
4,895,691	-				-0.0
4,895,691	-				+2.1
4,895,691	-				-0.1
4,895,691	-				-1.8
4,895,691	-				+0.4
4,895,691	-				-1.1
4,895,691	-				-0.9
4,895,691	-				-0.5
4,895,691	-				-0.8
4,895,691	-				-0.6
4,895,691	-				-0.4
4,895,691	-				-0.0
4,895,691	-				-0.6
4,895,691	-				-0.8
4,895,691	-				-2.3
4,895,691	-				+1.4
4,895,691	-				+0.1
4,895,691	-				+0.2
4,895,691	-				-0.4
4,895,691	-				+0.6
4,895,691	-				+0.1
4,895,691	-				-0.2
4,895,691	-				-1.5
4,895,691	-				+0.0
4,895,691	-				+0.7
4,895,691	-				-1.6
4,895,691	-				+1.0
4,895,735	+				+0.4
4,895,735	+				+0.7
4,895,735	+				-1.3
4,895,735	+				+0.4
4,895,735	+				+2.6
4,895,735	+				+0.1
4,895,736	-				+1.0
4,895,736	-				-1.3
4,895,736	-				+2.4
4,895,736	-				-0.9
4,895,736	-				+0.9
4,895,736	-				+1.3
4,895,736	-				+1.4
4,895,892	+		PFLU_RS21740	0.53	-0.3
4,895,892	+		PFLU_RS21740	0.53	-0.2
4,895,892	+		PFLU_RS21740	0.53	+0.1
4,895,892	+		PFLU_RS21740	0.53	-0.1
4,895,892	+		PFLU_RS21740	0.53	-1.3
4,895,892	+		PFLU_RS21740	0.53	+0.3
4,895,892	+		PFLU_RS21740	0.53	+0.7
4,895,892	+		PFLU_RS21740	0.53	-0.5
4,895,892	+		PFLU_RS21740	0.53	-1.7
4,895,892	+		PFLU_RS21740	0.53	-0.6
4,895,892	+		PFLU_RS21740	0.53	+0.9
4,895,892	+		PFLU_RS21740	0.53	-0.8
4,895,892	+		PFLU_RS21740	0.53	+0.3
4,895,892	+		PFLU_RS21740	0.53	+0.9
4,895,892	+		PFLU_RS21740	0.53	-1.4
4,895,892	+		PFLU_RS21740	0.53	-0.2
4,895,892	+		PFLU_RS21740	0.53	-1.1
4,895,892	+		PFLU_RS21740	0.53	-1.8
4,895,892	+		PFLU_RS21740	0.53	+0.1
4,895,893	-		PFLU_RS21740	0.53	+0.7
4,895,893	-		PFLU_RS21740	0.53	-0.1
4,895,893	-		PFLU_RS21740	0.53	+1.3
4,895,893	-		PFLU_RS21740	0.53	-0.5
4,895,893	-		PFLU_RS21740	0.53	+0.0
4,895,893	-		PFLU_RS21740	0.53	+0.8
4,895,893	-		PFLU_RS21740	0.53	+0.9
4,895,893	-		PFLU_RS21740	0.53	+0.5
4,895,893	-		PFLU_RS21740	0.53	+1.4
4,895,893	-		PFLU_RS21740	0.53	-1.2
4,895,893	-		PFLU_RS21740	0.53	+0.3
4,895,893	-		PFLU_RS21740	0.53	+0.7
4,895,934	+		PFLU_RS21740	0.65	-0.6
4,895,934	+		PFLU_RS21740	0.65	-1.0
4,896,046	+				-1.5
4,896,046	+				-1.0
4,896,046	+				-0.6
4,896,046	+				+2.7
4,896,046	+				+0.2
4,896,047	-				+0.7
4,896,047	-				-0.1
4,896,047	-				-0.0
4,896,047	-				+1.7
4,896,047	-				+0.3
4,896,047	-				+1.2
4,896,047	-				+0.4
4,896,047	-				-0.1
4,896,047	-				+0.3
4,896,047	-				-1.8
4,896,047	-				+1.0
4,896,090	-				-0.3
4,896,090	-				-1.3
4,896,090	-				+1.2
4,896,148	+				+1.0
4,896,148	+				+1.1
4,896,148	+				-0.1
4,896,148	+				+0.8
4,896,149	-				-1.0
4,896,149	-				+0.1
4,896,149	-				+1.5