Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20515

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,618,557	+		PFLU_RS20510	0.27	-1.5
4,618,558	-		PFLU_RS20510	0.27	-1.5
4,618,558	-		PFLU_RS20510	0.27	-1.8
4,618,558	-		PFLU_RS20510	0.27	-4.3
4,619,022	+		PFLU_RS20510	0.65	-2.0
4,619,022	+		PFLU_RS20510	0.65	-1.3
4,619,022	+		PFLU_RS20510	0.65	-2.1
4,619,022	+		PFLU_RS20510	0.65	-1.4
4,619,022	+		PFLU_RS20510	0.65	-3.7
4,619,023	-		PFLU_RS20510	0.65	-2.2
4,619,023	-		PFLU_RS20510	0.65	-0.9
4,619,023	-		PFLU_RS20510	0.65	-1.7
4,619,052	+		PFLU_RS20510	0.67	-2.9
4,619,052	+		PFLU_RS20510	0.67	-2.0
4,619,052	+		PFLU_RS20510	0.67	-0.6
4,619,053	-		PFLU_RS20510	0.67	-2.6
4,619,053	-		PFLU_RS20510	0.67	-0.8
4,619,203	+		PFLU_RS20510	0.80	-1.0
4,619,203	+		PFLU_RS20510	0.80	-1.0
4,619,236	+		PFLU_RS20510	0.83	-2.4
4,619,236	+		PFLU_RS20510	0.83	-3.0
4,619,236	+		PFLU_RS20510	0.83	-3.8
4,619,236	+		PFLU_RS20510	0.83	-2.1
4,619,236	+		PFLU_RS20510	0.83	-3.6
4,619,236	+		PFLU_RS20510	0.83	-0.1
4,619,236	+		PFLU_RS20510	0.83	-2.9
4,619,236	+		PFLU_RS20510	0.83	-0.5
4,619,236	+		PFLU_RS20510	0.83	-3.1
4,619,236	+		PFLU_RS20510	0.83	-3.9
4,619,236	+		PFLU_RS20510	0.83	-0.7
4,619,236	+		PFLU_RS20510	0.83	-0.8
4,619,236	+		PFLU_RS20510	0.83	-1.8
4,619,236	+		PFLU_RS20510	0.83	-1.1
4,619,236	+		PFLU_RS20510	0.83	-2.0
4,619,236	+		PFLU_RS20510	0.83	-1.8
4,619,237	-		PFLU_RS20510	0.83	-2.5
4,619,237	-		PFLU_RS20510	0.83	-0.0
4,619,237	-		PFLU_RS20510	0.83	-3.1
4,619,237	-		PFLU_RS20510	0.83	-2.0
4,619,237	-		PFLU_RS20510	0.83	-1.0
4,619,237	-		PFLU_RS20510	0.83	-1.3
4,619,237	-		PFLU_RS20510	0.83	-2.8
4,619,237	-		PFLU_RS20510	0.83	-2.9
4,619,237	-		PFLU_RS20510	0.83	-3.6
4,619,237	-		PFLU_RS20510	0.83	-0.9
4,619,237	-		PFLU_RS20510	0.83	-2.6
4,619,237	-		PFLU_RS20510	0.83	-3.2
4,619,238	+		PFLU_RS20510	0.83	-2.5
4,619,247	+		PFLU_RS20510	0.83	-0.5
4,619,248	-		PFLU_RS20510	0.84	-1.5
4,619,248	-		PFLU_RS20510	0.84	-1.1
4,619,248	-		PFLU_RS20510	0.84	-1.0
4,619,248	-		PFLU_RS20510	0.84	-1.6
4,619,248	-		PFLU_RS20510	0.84	-1.6
4,619,310	+		PFLU_RS20510	0.89	-2.9
4,619,310	+		PFLU_RS20510	0.89	-1.6
4,619,310	+		PFLU_RS20510	0.89	-2.6
4,619,310	+		PFLU_RS20510	0.89	-2.3
4,619,310	+		PFLU_RS20510	0.89	-1.1
4,619,310	+		PFLU_RS20510	0.89	-2.9
4,619,310	+		PFLU_RS20510	0.89	-2.9
4,619,310	+		PFLU_RS20510	0.89	-1.8
4,619,310	+		PFLU_RS20510	0.89	-3.1
4,619,310	+		PFLU_RS20510	0.89	-2.8
4,619,310	+		PFLU_RS20510	0.89	-0.6
4,619,310	+		PFLU_RS20510	0.89	-0.9
4,619,310	+		PFLU_RS20510	0.89	-2.6
4,619,311	-		PFLU_RS20510	0.89	-1.1
4,619,311	-		PFLU_RS20510	0.89	-1.2
4,619,311	-		PFLU_RS20510	0.89	-2.0
4,619,311	-		PFLU_RS20510	0.89	-2.9
4,619,311	-		PFLU_RS20510	0.89	-1.1
4,619,311	-		PFLU_RS20510	0.89	-2.8
4,619,311	-		PFLU_RS20510	0.89	-2.0
4,619,311	-		PFLU_RS20510	0.89	-1.3
4,619,311	-		PFLU_RS20510	0.89	-2.3
4,619,311	-		PFLU_RS20510	0.89	-3.1
4,619,311	-		PFLU_RS20510	0.89	-2.7
4,619,311	-		PFLU_RS20510	0.89	+0.7
4,619,311	-		PFLU_RS20510	0.89	-2.7
4,619,311	-		PFLU_RS20510	0.89	-1.1
4,619,311	-		PFLU_RS20510	0.89	-3.7
4,619,311	-		PFLU_RS20510	0.89	-2.5
4,619,311	-		PFLU_RS20510	0.89	-4.0
4,619,311	-		PFLU_RS20510	0.89	-0.6
4,619,311	-		PFLU_RS20510	0.89	-1.2
4,619,311	-		PFLU_RS20510	0.89	+1.7
4,619,311	-		PFLU_RS20510	0.89	-1.0
4,619,311	-		PFLU_RS20510	0.89	-2.5
4,619,311	-		PFLU_RS20510	0.89	-2.2
4,619,311	-		PFLU_RS20510	0.89	+0.1
4,619,311	-		PFLU_RS20510	0.89	-2.0
4,619,311	-		PFLU_RS20510	0.89	-1.0
4,619,311	-		PFLU_RS20510	0.89	-3.3
4,619,311	-		PFLU_RS20510	0.89	-3.9
4,619,311	-		PFLU_RS20510	0.89	-1.4
4,619,311	-		PFLU_RS20510	0.89	-3.3
4,619,311	-		PFLU_RS20510	0.89	-2.1
4,619,396	+				-2.4
4,619,396	+				-2.9
4,619,397	-				-2.8
4,619,397	-				-3.8
4,619,397	-				-2.1
4,619,471	+				-1.5
4,619,475	+				-2.7
4,619,475	+				-1.2
4,619,475	+				-0.2
4,619,476	-				+0.5
4,619,476	-				-0.7
4,619,476	-				-0.3
4,619,476	-				-0.1
4,619,480	+				+0.2
4,619,480	+				-1.8
4,619,481	-				-1.0
4,619,481	-				+0.2
4,619,481	-				+0.5
4,619,523	-				-0.8
4,619,600	+				-1.8
4,619,627	+				+1.7
4,619,628	-				-0.6
4,619,628	-				-1.1
4,619,628	-				+0.1
4,619,628	-				+0.7
4,619,628	-				-0.9
4,619,628	-				-0.3
4,619,628	-				-0.6
4,619,807	+		PFLU_RS20515	0.20	+0.7
4,619,849	+		PFLU_RS20515	0.22	-0.3
4,619,849	+		PFLU_RS20515	0.22	+0.1
4,619,849	+		PFLU_RS20515	0.22	+0.7
4,619,850	-		PFLU_RS20515	0.22	+0.7
4,619,850	-		PFLU_RS20515	0.22	-0.9
4,620,206	+		PFLU_RS20515	0.46	+0.1
4,620,207	-		PFLU_RS20515	0.46	-0.3
4,620,207	-		PFLU_RS20515	0.46	+0.1
4,620,248	+		PFLU_RS20515	0.49	+0.1
4,620,249	-		PFLU_RS20515	0.49	+0.7
4,620,249	-		PFLU_RS20515	0.49	-0.3
4,620,329	+		PFLU_RS20515	0.54	-0.6
4,620,329	+		PFLU_RS20515	0.54	-0.3
4,620,330	-		PFLU_RS20515	0.54	-1.3
4,620,330	-		PFLU_RS20515	0.54	+0.7
4,620,330	-		PFLU_RS20515	0.54	-0.9
4,620,330	-		PFLU_RS20515	0.54	+0.7
4,620,330	-		PFLU_RS20515	0.54	-1.3
4,620,410	+		PFLU_RS20515	0.60	+0.7
4,620,410	+		PFLU_RS20515	0.60	+0.1
4,620,410	+		PFLU_RS20515	0.60	+0.7
4,620,459	+		PFLU_RS20515	0.63	+0.7
4,620,460	-		PFLU_RS20515	0.63	+1.7
4,620,675	-		PFLU_RS20515	0.77	+0.7
4,620,866	-		PFLU_RS20515	0.90	-0.6
4,620,991	-				+0.1
4,620,991	-				+0.7
4,620,991	-				+0.1
4,621,032	-				-1.3
4,621,032	-				-1.3
4,621,035	+				-0.6
4,621,035	+				-0.3
4,621,036	-				+0.7
4,621,036	-				-0.6
4,621,060	+				-1.6
4,621,060	+				-1.3
4,621,060	+				-1.3
4,621,061	-				-1.0
4,621,061	-				+0.7
4,621,061	-				-0.2
4,621,061	-				+1.0
4,621,061	-				-0.8
4,621,344	+		PFLU_RS20520	0.51	-1.3
4,621,344	+		PFLU_RS20520	0.51	-0.9
4,621,344	+		PFLU_RS20520	0.51	+0.7
4,621,344	+		PFLU_RS20520	0.51	-1.2
4,621,344	+		PFLU_RS20520	0.51	+0.1
4,621,345	-		PFLU_RS20520	0.51	-0.7
4,621,345	-		PFLU_RS20520	0.51	-0.3
4,621,345	-		PFLU_RS20520	0.51	-1.0
4,621,345	-		PFLU_RS20520	0.51	-0.3
4,621,345	-		PFLU_RS20520	0.51	-1.1
4,621,345	-		PFLU_RS20520	0.51	-1.6
4,621,345	-		PFLU_RS20520	0.51	-0.3
4,621,345	-		PFLU_RS20520	0.51	-2.1
4,621,358	+		PFLU_RS20520	0.54	-2.8
4,621,358	+		PFLU_RS20520	0.54	-2.6
4,621,359	-		PFLU_RS20520	0.54	+0.2
4,621,363	+		PFLU_RS20520	0.54	-2.9
4,621,363	+		PFLU_RS20520	0.54	-1.8
4,621,363	+		PFLU_RS20520	0.54	-1.9
4,621,363	+		PFLU_RS20520	0.54	-0.9
4,621,363	+		PFLU_RS20520	0.54	-1.8
4,621,363	+		PFLU_RS20520	0.54	-1.5
4,621,364	-		PFLU_RS20520	0.55	-0.9
4,621,364	-		PFLU_RS20520	0.55	+1.3
4,621,364	-		PFLU_RS20520	0.55	-1.6
4,621,364	-		PFLU_RS20520	0.55	-0.1
4,621,364	-		PFLU_RS20520	0.55	-0.5
4,621,364	-		PFLU_RS20520	0.55	+0.6
4,621,364	-		PFLU_RS20520	0.55	-0.8
4,621,447	+		PFLU_RS20520	0.70	-2.4
4,621,447	+		PFLU_RS20520	0.70	-0.9
4,621,448	-		PFLU_RS20520	0.70	-1.8
4,621,448	-		PFLU_RS20520	0.70	-0.5
4,621,448	-		PFLU_RS20520	0.70	-0.9
4,621,448	-		PFLU_RS20520	0.70	-1.5
4,621,448	-		PFLU_RS20520	0.70	-0.4
4,621,448	-		PFLU_RS20520	0.70	+0.4
4,621,459	+		PFLU_RS20520	0.72	-1.6
4,621,460	-		PFLU_RS20520	0.72	-1.8
4,621,491	+		PFLU_RS20520	0.77	+0.1
4,621,536	+		PFLU_RS20520	0.85	-0.9
4,621,551	+		PFLU_RS20520	0.88	-0.6
4,621,551	+		PFLU_RS20520	0.88	+0.5
4,621,552	-		PFLU_RS20520	0.88	+0.1
4,621,608	-				-1.8
4,621,608	-				-0.6
4,621,608	-				-0.4
4,621,626	+				-0.6
4,621,627	-				-0.3
4,621,651	+				-0.3
4,621,673	+				-0.1
4,621,705	+				-1.6
4,621,706	-				-0.3
4,621,706	-				+0.8
4,621,742	+				-0.2
4,621,743	-				-1.3
4,621,765	+				+0.5
4,621,765	+				+1.4
4,621,765	+				+1.3
4,621,766	-				-0.1
4,621,766	-				+1.7
4,621,792	+				-2.0
4,621,793	-				-0.0
4,621,793	-				+0.7
4,621,793	-				+0.1
4,621,793	-				+1.7
4,621,982	-		PFLU_RS20525	0.16	-1.2
4,622,016	+		PFLU_RS20525	0.21	-1.0
4,622,016	+		PFLU_RS20525	0.21	-1.3
4,622,016	+		PFLU_RS20525	0.21	+0.5
4,622,016	+		PFLU_RS20525	0.21	-0.7
4,622,016	+		PFLU_RS20525	0.21	-0.7
4,622,016	+		PFLU_RS20525	0.21	+0.8
4,622,016	+		PFLU_RS20525	0.21	+1.1
4,622,017	-		PFLU_RS20525	0.22	-2.6
4,622,017	-		PFLU_RS20525	0.22	+0.6
4,622,017	-		PFLU_RS20525	0.22	-0.4