Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS20350 and PFLU_RS20355 are separated by 25 nucleotides PFLU_RS20355 and PFLU_RS20360 overlap by 4 nucleotides PFLU_RS20360 and PFLU_RS20365 are separated by 23 nucleotides
PFLU_RS20350: PFLU_RS20350 - nucleoside hydrolase, at 4,594,108 to 4,595,136
_RS20350
PFLU_RS20355: PFLU_RS20355 - D-ribose pyranase, at 4,595,162 to 4,595,566
_RS20355
PFLU_RS20360: PFLU_RS20360 - ribokinase, at 4,595,563 to 4,596,480
_RS20360
PFLU_RS20365: PFLU_RS20365 - LacI family DNA-binding transcriptional regulator, at 4,596,504 to 4,597,526
_RS20365
Position (kb) 4595
4596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4594.304 kb on + strand, within PFLU_RS20350 at 4594.304 kb on + strand, within PFLU_RS20350 at 4594.305 kb on - strand, within PFLU_RS20350 at 4594.305 kb on - strand, within PFLU_RS20350 at 4594.305 kb on - strand, within PFLU_RS20350 at 4594.344 kb on + strand, within PFLU_RS20350 at 4594.349 kb on + strand, within PFLU_RS20350 at 4594.349 kb on + strand, within PFLU_RS20350 at 4594.349 kb on + strand, within PFLU_RS20350 at 4594.349 kb on + strand, within PFLU_RS20350 at 4594.350 kb on - strand, within PFLU_RS20350 at 4594.350 kb on - strand, within PFLU_RS20350 at 4594.350 kb on - strand, within PFLU_RS20350 at 4594.350 kb on - strand, within PFLU_RS20350 at 4594.373 kb on + strand, within PFLU_RS20350 at 4594.373 kb on + strand, within PFLU_RS20350 at 4594.373 kb on + strand, within PFLU_RS20350 at 4594.374 kb on - strand, within PFLU_RS20350 at 4594.374 kb on - strand, within PFLU_RS20350 at 4594.374 kb on - strand, within PFLU_RS20350 at 4594.374 kb on - strand, within PFLU_RS20350 at 4594.374 kb on - strand, within PFLU_RS20350 at 4594.457 kb on - strand, within PFLU_RS20350 at 4594.457 kb on - strand, within PFLU_RS20350 at 4594.484 kb on + strand, within PFLU_RS20350 at 4594.484 kb on + strand, within PFLU_RS20350 at 4594.484 kb on + strand, within PFLU_RS20350 at 4594.484 kb on + strand, within PFLU_RS20350 at 4594.484 kb on + strand, within PFLU_RS20350 at 4594.484 kb on + strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.485 kb on - strand, within PFLU_RS20350 at 4594.566 kb on + strand, within PFLU_RS20350 at 4594.566 kb on + strand, within PFLU_RS20350 at 4594.567 kb on - strand, within PFLU_RS20350 at 4594.728 kb on - strand, within PFLU_RS20350 at 4594.761 kb on + strand, within PFLU_RS20350 at 4594.788 kb on + strand, within PFLU_RS20350 at 4594.788 kb on + strand, within PFLU_RS20350 at 4594.788 kb on + strand, within PFLU_RS20350 at 4594.789 kb on - strand, within PFLU_RS20350 at 4594.789 kb on - strand, within PFLU_RS20350 at 4594.789 kb on - strand, within PFLU_RS20350 at 4594.789 kb on - strand, within PFLU_RS20350 at 4594.789 kb on - strand, within PFLU_RS20350 at 4594.817 kb on + strand, within PFLU_RS20350 at 4594.856 kb on + strand, within PFLU_RS20350 at 4594.856 kb on + strand, within PFLU_RS20350 at 4594.856 kb on + strand, within PFLU_RS20350 at 4594.856 kb on + strand, within PFLU_RS20350 at 4595.136 kb on + strand at 4595.136 kb on + strand at 4595.136 kb on + strand at 4595.136 kb on + strand at 4595.136 kb on + strand at 4595.136 kb on + strand at 4595.136 kb on + strand at 4595.137 kb on - strand at 4595.137 kb on - strand at 4595.137 kb on - strand at 4595.137 kb on - strand at 4595.137 kb on - strand at 4595.137 kb on - strand at 4595.137 kb on - strand at 4595.163 kb on + strand at 4595.163 kb on + strand at 4595.163 kb on + strand at 4595.164 kb on - strand at 4595.164 kb on - strand at 4595.164 kb on - strand at 4595.164 kb on - strand at 4595.164 kb on - strand at 4595.171 kb on + strand at 4595.171 kb on + strand at 4595.199 kb on + strand at 4595.199 kb on + strand at 4595.200 kb on - strand at 4595.311 kb on + strand, within PFLU_RS20355 at 4595.312 kb on - strand, within PFLU_RS20355 at 4595.542 kb on + strand at 4595.584 kb on + strand at 4595.584 kb on + strand at 4595.584 kb on + strand at 4595.584 kb on + strand at 4595.584 kb on + strand at 4595.585 kb on - strand at 4595.585 kb on - strand at 4595.585 kb on - strand at 4595.585 kb on - strand at 4595.585 kb on - strand at 4595.604 kb on + strand at 4595.604 kb on + strand at 4595.604 kb on + strand at 4595.605 kb on - strand at 4595.721 kb on + strand, within PFLU_RS20360 at 4595.722 kb on - strand, within PFLU_RS20360 at 4595.939 kb on + strand, within PFLU_RS20360 at 4595.939 kb on + strand, within PFLU_RS20360 at 4595.940 kb on - strand, within PFLU_RS20360 at 4595.940 kb on - strand, within PFLU_RS20360 at 4595.954 kb on + strand, within PFLU_RS20360 at 4595.954 kb on + strand, within PFLU_RS20360 at 4595.954 kb on + strand, within PFLU_RS20360 at 4595.954 kb on + strand, within PFLU_RS20360 at 4595.954 kb on + strand, within PFLU_RS20360 at 4595.954 kb on + strand, within PFLU_RS20360 at 4595.955 kb on - strand, within PFLU_RS20360 at 4595.955 kb on - strand, within PFLU_RS20360 at 4595.955 kb on - strand, within PFLU_RS20360 at 4595.955 kb on - strand, within PFLU_RS20360 at 4596.038 kb on + strand, within PFLU_RS20360 at 4596.217 kb on + strand, within PFLU_RS20360 at 4596.217 kb on + strand, within PFLU_RS20360 at 4596.281 kb on + strand, within PFLU_RS20360 at 4596.282 kb on - strand, within PFLU_RS20360 at 4596.457 kb on + strand at 4596.457 kb on + strand at 4596.458 kb on - strand at 4596.458 kb on - strand at 4596.460 kb on + strand at 4596.460 kb on + strand at 4596.460 kb on + strand at 4596.460 kb on + strand at 4596.460 kb on + strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.461 kb on - strand at 4596.466 kb on + strand at 4596.466 kb on + strand at 4596.467 kb on - strand at 4596.467 kb on - strand at 4596.467 kb on - strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.480 kb on + strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.481 kb on - strand at 4596.488 kb on + strand at 4596.488 kb on + strand at 4596.489 kb on - strand at 4596.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 4,594,304 + PFLU_RS20350 0.19 -0.5 4,594,304 + PFLU_RS20350 0.19 -2.2 4,594,305 - PFLU_RS20350 0.19 +0.2 4,594,305 - PFLU_RS20350 0.19 +0.7 4,594,305 - PFLU_RS20350 0.19 -0.5 4,594,344 + PFLU_RS20350 0.23 +0.6 4,594,349 + PFLU_RS20350 0.23 +0.8 4,594,349 + PFLU_RS20350 0.23 +0.9 4,594,349 + PFLU_RS20350 0.23 -0.3 4,594,349 + PFLU_RS20350 0.23 -0.0 4,594,350 - PFLU_RS20350 0.24 +1.0 4,594,350 - PFLU_RS20350 0.24 +0.4 4,594,350 - PFLU_RS20350 0.24 -0.4 4,594,350 - PFLU_RS20350 0.24 -0.2 4,594,373 + PFLU_RS20350 0.26 -1.8 4,594,373 + PFLU_RS20350 0.26 +1.0 4,594,373 + PFLU_RS20350 0.26 +0.1 4,594,374 - PFLU_RS20350 0.26 -1.5 4,594,374 - PFLU_RS20350 0.26 -1.1 4,594,374 - PFLU_RS20350 0.26 -1.9 4,594,374 - PFLU_RS20350 0.26 +0.2 4,594,374 - PFLU_RS20350 0.26 +0.4 4,594,457 - PFLU_RS20350 0.34 +0.4 4,594,457 - PFLU_RS20350 0.34 -0.8 4,594,484 + PFLU_RS20350 0.37 +0.4 4,594,484 + PFLU_RS20350 0.37 +0.6 4,594,484 + PFLU_RS20350 0.37 +0.2 4,594,484 + PFLU_RS20350 0.37 -0.0 4,594,484 + PFLU_RS20350 0.37 -1.3 4,594,484 + PFLU_RS20350 0.37 +0.2 4,594,485 - PFLU_RS20350 0.37 +0.4 4,594,485 - PFLU_RS20350 0.37 +0.6 4,594,485 - PFLU_RS20350 0.37 +1.7 4,594,485 - PFLU_RS20350 0.37 +0.2 4,594,485 - PFLU_RS20350 0.37 -0.9 4,594,485 - PFLU_RS20350 0.37 -1.1 4,594,485 - PFLU_RS20350 0.37 -0.6 4,594,485 - PFLU_RS20350 0.37 +0.9 4,594,485 - PFLU_RS20350 0.37 +0.1 4,594,485 - PFLU_RS20350 0.37 -0.2 4,594,485 - PFLU_RS20350 0.37 -0.3 4,594,485 - PFLU_RS20350 0.37 -0.1 4,594,566 + PFLU_RS20350 0.45 -1.6 4,594,566 + PFLU_RS20350 0.45 -0.7 4,594,567 - PFLU_RS20350 0.45 -2.4 4,594,728 - PFLU_RS20350 0.60 -0.2 4,594,761 + PFLU_RS20350 0.63 +2.4 4,594,788 + PFLU_RS20350 0.66 -1.5 4,594,788 + PFLU_RS20350 0.66 -0.8 4,594,788 + PFLU_RS20350 0.66 +0.8 4,594,789 - PFLU_RS20350 0.66 +0.4 4,594,789 - PFLU_RS20350 0.66 +1.3 4,594,789 - PFLU_RS20350 0.66 -0.1 4,594,789 - PFLU_RS20350 0.66 +0.5 4,594,789 - PFLU_RS20350 0.66 -0.9 4,594,817 + PFLU_RS20350 0.69 -0.7 4,594,856 + PFLU_RS20350 0.73 +0.2 4,594,856 + PFLU_RS20350 0.73 -0.4 4,594,856 + PFLU_RS20350 0.73 +1.0 4,594,856 + PFLU_RS20350 0.73 -0.2 4,595,136 + -0.4 4,595,136 + +1.5 4,595,136 + -1.1 4,595,136 + -2.0 4,595,136 + +0.9 4,595,136 + -0.1 4,595,136 + -0.2 4,595,137 - +0.0 4,595,137 - -0.1 4,595,137 - +0.9 4,595,137 - -0.2 4,595,137 - -0.6 4,595,137 - -0.6 4,595,137 - +0.3 4,595,163 + +0.1 4,595,163 + -0.2 4,595,163 + -0.1 4,595,164 - -0.2 4,595,164 - -0.1 4,595,164 - +1.3 4,595,164 - -0.5 4,595,164 - +0.2 4,595,171 + +0.1 4,595,171 + +0.5 4,595,199 + -0.6 4,595,199 + +0.4 4,595,200 - +0.4 4,595,311 + PFLU_RS20355 0.37 +0.5 4,595,312 - PFLU_RS20355 0.37 -0.8 4,595,542 + -0.6 4,595,584 + -0.5 4,595,584 + -1.8 4,595,584 + +0.6 4,595,584 + -1.1 4,595,584 + -2.5 4,595,585 - +0.0 4,595,585 - -2.3 4,595,585 - -0.4 4,595,585 - -1.1 4,595,585 - -0.6 4,595,604 + +0.3 4,595,604 + -0.2 4,595,604 + +0.6 4,595,605 - -0.5 4,595,721 + PFLU_RS20360 0.17 -0.2 4,595,722 - PFLU_RS20360 0.17 +1.3 4,595,939 + PFLU_RS20360 0.41 +0.6 4,595,939 + PFLU_RS20360 0.41 -0.9 4,595,940 - PFLU_RS20360 0.41 +1.7 4,595,940 - PFLU_RS20360 0.41 +0.8 4,595,954 + PFLU_RS20360 0.43 +0.4 4,595,954 + PFLU_RS20360 0.43 -1.1 4,595,954 + PFLU_RS20360 0.43 -1.3 4,595,954 + PFLU_RS20360 0.43 +1.4 4,595,954 + PFLU_RS20360 0.43 +1.2 4,595,954 + PFLU_RS20360 0.43 +0.7 4,595,955 - PFLU_RS20360 0.43 -2.9 4,595,955 - PFLU_RS20360 0.43 +0.3 4,595,955 - PFLU_RS20360 0.43 +2.9 4,595,955 - PFLU_RS20360 0.43 -2.0 4,596,038 + PFLU_RS20360 0.52 +0.1 4,596,217 + PFLU_RS20360 0.71 -0.5 4,596,217 + PFLU_RS20360 0.71 +2.5 4,596,281 + PFLU_RS20360 0.78 +0.7 4,596,282 - PFLU_RS20360 0.78 +1.0 4,596,457 + -0.4 4,596,457 + -1.8 4,596,458 - -1.1 4,596,458 - +1.1 4,596,460 + -0.5 4,596,460 + +0.1 4,596,460 + +0.3 4,596,460 + -0.6 4,596,460 + +1.0 4,596,461 - +1.0 4,596,461 - -0.3 4,596,461 - +0.5 4,596,461 - -0.1 4,596,461 - -0.3 4,596,461 - -0.0 4,596,461 - +0.6 4,596,461 - +0.8 4,596,466 + -0.6 4,596,466 + +2.0 4,596,467 - +0.7 4,596,467 - +0.3 4,596,467 - +0.1 4,596,480 + -0.1 4,596,480 + -1.6 4,596,480 + +1.0 4,596,480 + +0.3 4,596,480 + +0.7 4,596,480 + +1.3 4,596,480 + -0.1 4,596,480 + +0.5 4,596,480 + +3.8 4,596,480 + +0.3 4,596,480 + -0.8 4,596,480 + -0.1 4,596,481 - +0.4 4,596,481 - -0.7 4,596,481 - +0.9 4,596,481 - +0.6 4,596,481 - +1.3 4,596,481 - +0.7 4,596,481 - +1.7 4,596,481 - +0.2 4,596,481 - +0.6 4,596,481 - -2.4 4,596,481 - +0.2 4,596,481 - +0.7 4,596,481 - -0.8 4,596,481 - +0.4 4,596,488 + +0.3 4,596,488 + -0.8 4,596,489 - -0.0 4,596,512 - +0.4
Or see this region's nucleotide sequence