Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS19350

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,375,350	-		PFLU_RS19345	0.52	-0.3
4,375,379	+		PFLU_RS19345	0.54	+0.5
4,375,428	+		PFLU_RS19345	0.57	+0.3
4,375,428	+		PFLU_RS19345	0.57	+0.7
4,375,428	+		PFLU_RS19345	0.57	-0.2
4,375,428	+		PFLU_RS19345	0.57	+0.1
4,375,429	-		PFLU_RS19345	0.57	+0.3
4,375,434	+		PFLU_RS19345	0.57	+1.1
4,375,434	+		PFLU_RS19345	0.57	+0.9
4,375,434	+		PFLU_RS19345	0.57	-3.0
4,375,434	+		PFLU_RS19345	0.57	+0.2
4,375,435	-		PFLU_RS19345	0.57	+1.7
4,375,435	-		PFLU_RS19345	0.57	+0.8
4,375,479	+		PFLU_RS19345	0.60	-0.7
4,375,480	-		PFLU_RS19345	0.60	+0.3
4,375,480	-		PFLU_RS19345	0.60	+0.5
4,375,543	-		PFLU_RS19345	0.64	+1.0
4,375,543	-		PFLU_RS19345	0.64	+1.2
4,375,543	-		PFLU_RS19345	0.64	+0.4
4,375,543	-		PFLU_RS19345	0.64	+1.0
4,375,551	+		PFLU_RS19345	0.64	-1.8
4,375,580	-		PFLU_RS19345	0.66	+0.3
4,375,670	+		PFLU_RS19345	0.72	+0.2
4,375,693	+		PFLU_RS19345	0.73	+0.5
4,375,693	+		PFLU_RS19345	0.73	-1.2
4,375,693	+		PFLU_RS19345	0.73	+1.0
4,375,693	+		PFLU_RS19345	0.73	+0.3
4,375,693	+		PFLU_RS19345	0.73	-0.9
4,375,694	-		PFLU_RS19345	0.73	-0.5
4,375,694	-		PFLU_RS19345	0.73	-0.5
4,375,759	+		PFLU_RS19345	0.77	-2.4
4,375,759	+		PFLU_RS19345	0.77	-1.7
4,375,759	+		PFLU_RS19345	0.77	+0.1
4,375,759	+		PFLU_RS19345	0.77	-0.0
4,375,760	-		PFLU_RS19345	0.77	+0.4
4,375,760	-		PFLU_RS19345	0.77	+0.2
4,375,760	-		PFLU_RS19345	0.77	-1.3
4,375,789	+		PFLU_RS19345	0.79	+0.6
4,375,789	+		PFLU_RS19345	0.79	-0.1
4,375,789	+		PFLU_RS19345	0.79	-0.0
4,375,789	+		PFLU_RS19345	0.79	-0.3
4,375,790	-		PFLU_RS19345	0.79	-0.5
4,375,790	-		PFLU_RS19345	0.79	+0.3
4,375,790	-		PFLU_RS19345	0.79	+0.9
4,375,828	+		PFLU_RS19345	0.81	+0.8
4,375,828	+		PFLU_RS19345	0.81	-0.7
4,375,828	+		PFLU_RS19345	0.81	+2.0
4,375,828	+		PFLU_RS19345	0.81	+1.0
4,375,828	+		PFLU_RS19345	0.81	-0.2
4,375,828	+		PFLU_RS19345	0.81	+1.4
4,375,829	-		PFLU_RS19345	0.81	+0.9
4,375,829	-		PFLU_RS19345	0.81	+0.3
4,375,829	-		PFLU_RS19345	0.81	+0.1
4,375,829	-		PFLU_RS19345	0.81	-1.7
4,375,829	-		PFLU_RS19345	0.81	+0.5
4,375,829	-		PFLU_RS19345	0.81	+0.6
4,375,829	-		PFLU_RS19345	0.81	-1.3
4,375,829	-		PFLU_RS19345	0.81	+0.4
4,375,957	-		PFLU_RS19345	0.89	-0.1
4,375,957	-		PFLU_RS19345	0.89	+0.1
4,376,055	+				-1.0
4,376,055	+				+0.4
4,376,056	-				-0.8
4,376,056	-				-0.2
4,376,056	-				-1.0
4,376,058	+				-1.7
4,376,180	-				+0.6
4,376,261	-				+0.2
4,376,293	+				+0.3
4,376,293	+				-0.3
4,376,294	-				+1.9
4,376,294	-				-1.0
4,376,294	-				-2.4
4,376,352	+				-0.6
4,376,454	-		PFLU_RS19350	0.30	-0.0
4,376,472	+		PFLU_RS19350	0.34	+0.5
4,376,473	-		PFLU_RS19350	0.34	+0.7
4,376,473	-		PFLU_RS19350	0.34	+0.3
4,376,473	-		PFLU_RS19350	0.34	+0.9
4,376,473	-		PFLU_RS19350	0.34	+0.3
4,376,473	-		PFLU_RS19350	0.34	-1.5
4,376,496	+		PFLU_RS19350	0.39	+0.5
4,376,497	-		PFLU_RS19350	0.39	-0.5
4,376,576	+		PFLU_RS19350	0.55	+0.3
4,376,576	+		PFLU_RS19350	0.55	+0.7
4,376,576	+		PFLU_RS19350	0.55	-1.4
4,376,576	+		PFLU_RS19350	0.55	+0.4
4,376,576	+		PFLU_RS19350	0.55	-1.7
4,376,576	+		PFLU_RS19350	0.55	-0.7
4,376,576	+		PFLU_RS19350	0.55	+0.3
4,376,577	-		PFLU_RS19350	0.55	+0.4
4,376,577	-		PFLU_RS19350	0.55	-0.6
4,376,577	-		PFLU_RS19350	0.55	+0.4
4,376,813	+				+0.2
4,376,869	-				-0.7
4,376,872	+				-0.3
4,376,880	+				+0.2
4,376,892	-				-0.3
4,376,902	+				+0.3
4,376,941	+				+1.4
4,376,941	+				+1.8
4,376,953	+				+1.4
4,376,954	-				-0.8
4,376,954	-				-0.2
4,376,954	-				+1.3
4,376,978	+				+0.9
4,376,978	+				+0.6
4,376,979	-				+1.1
4,376,979	-				-1.4
4,377,064	+				-0.7
4,377,065	-				-0.8
4,377,065	-				-0.0
4,377,065	-				+2.8
4,377,113	+		PFLU_RS19355	0.10	-1.4
4,377,113	+		PFLU_RS19355	0.10	+0.5
4,377,113	+		PFLU_RS19355	0.10	+0.2
4,377,114	-		PFLU_RS19355	0.10	-0.1
4,377,114	-		PFLU_RS19355	0.10	+0.4
4,377,114	-		PFLU_RS19355	0.10	-1.3
4,377,304	+		PFLU_RS19355	0.26	+2.9
4,377,304	+		PFLU_RS19355	0.26	+0.8
4,377,304	+		PFLU_RS19355	0.26	+0.5
4,377,304	+		PFLU_RS19355	0.26	-1.7
4,377,304	+		PFLU_RS19355	0.26	-1.2
4,377,305	-		PFLU_RS19355	0.26	+1.0
4,377,305	-		PFLU_RS19355	0.26	+0.5
4,377,305	-		PFLU_RS19355	0.26	+0.8
4,377,305	-		PFLU_RS19355	0.26	+0.6
4,377,305	-		PFLU_RS19355	0.26	+0.2
4,377,386	-		PFLU_RS19355	0.32	+0.7
4,377,496	+		PFLU_RS19355	0.41	-0.1
4,377,496	+		PFLU_RS19355	0.41	-0.7
4,377,496	+		PFLU_RS19355	0.41	-0.4
4,377,496	+		PFLU_RS19355	0.41	+0.3
4,377,496	+		PFLU_RS19355	0.41	-0.5
4,377,496	+		PFLU_RS19355	0.41	-0.7
4,377,496	+		PFLU_RS19355	0.41	-1.6
4,377,496	+		PFLU_RS19355	0.41	+0.6
4,377,496	+		PFLU_RS19355	0.41	+0.5
4,377,496	+		PFLU_RS19355	0.41	+1.6
4,377,496	+		PFLU_RS19355	0.41	+0.1
4,377,496	+		PFLU_RS19355	0.41	+0.2
4,377,497	-		PFLU_RS19355	0.41	-0.7
4,377,497	-		PFLU_RS19355	0.41	-1.0
4,377,497	-		PFLU_RS19355	0.41	+0.2
4,377,497	-		PFLU_RS19355	0.41	-0.1
4,377,497	-		PFLU_RS19355	0.41	+0.7
4,377,497	-		PFLU_RS19355	0.41	+0.9
4,377,497	-		PFLU_RS19355	0.41	-1.2
4,377,497	-		PFLU_RS19355	0.41	+0.7
4,377,497	-		PFLU_RS19355	0.41	-1.3
4,377,554	+		PFLU_RS19355	0.46	-1.1
4,377,554	+		PFLU_RS19355	0.46	+0.4
4,377,555	-		PFLU_RS19355	0.46	+0.4
4,377,680	-		PFLU_RS19355	0.56	-0.4
4,377,782	+		PFLU_RS19355	0.64	+0.4
4,377,782	+		PFLU_RS19355	0.64	-0.2
4,377,782	+		PFLU_RS19355	0.64	+1.0
4,377,782	+		PFLU_RS19355	0.64	-0.1
4,377,782	+		PFLU_RS19355	0.64	-1.4
4,377,783	-		PFLU_RS19355	0.64	+0.6
4,377,783	-		PFLU_RS19355	0.64	+0.7