Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS15365

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
3,443,794	+		PFLU_RS15360	0.16	-0.1
3,443,803	+		PFLU_RS15360	0.17	+0.5
3,443,803	+		PFLU_RS15360	0.17	-2.1
3,443,803	+		PFLU_RS15360	0.17	-1.1
3,443,803	+		PFLU_RS15360	0.17	-1.3
3,443,803	+		PFLU_RS15360	0.17	-0.9
3,443,803	+		PFLU_RS15360	0.17	-1.0
3,443,804	-		PFLU_RS15360	0.17	-2.8
3,443,804	-		PFLU_RS15360	0.17	+0.0
3,443,804	-		PFLU_RS15360	0.17	-0.4
3,443,804	-		PFLU_RS15360	0.17	-0.0
3,443,804	-		PFLU_RS15360	0.17	-1.1
3,443,804	-		PFLU_RS15360	0.17	-0.2
3,443,804	-		PFLU_RS15360	0.17	+0.0
3,443,842	+		PFLU_RS15360	0.20	-0.2
3,443,842	+		PFLU_RS15360	0.20	+0.4
3,443,842	+		PFLU_RS15360	0.20	+1.0
3,443,842	+		PFLU_RS15360	0.20	+0.6
3,443,842	+		PFLU_RS15360	0.20	-2.1
3,443,843	-		PFLU_RS15360	0.20	+0.5
3,443,843	-		PFLU_RS15360	0.20	-1.7
3,443,843	-		PFLU_RS15360	0.20	-0.7
3,443,843	-		PFLU_RS15360	0.20	+0.2
3,443,858	-		PFLU_RS15360	0.22	-2.0
3,443,938	+		PFLU_RS15360	0.29	-0.7
3,443,938	+		PFLU_RS15360	0.29	+0.5
3,444,049	+		PFLU_RS15360	0.40	+0.4
3,444,049	+		PFLU_RS15360	0.40	-1.3
3,444,050	-		PFLU_RS15360	0.40	+0.5
3,444,067	+		PFLU_RS15360	0.41	-0.3
3,444,067	+		PFLU_RS15360	0.41	+0.7
3,444,067	+		PFLU_RS15360	0.41	+0.0
3,444,067	+		PFLU_RS15360	0.41	+0.7
3,444,068	-		PFLU_RS15360	0.41	-0.1
3,444,068	-		PFLU_RS15360	0.41	-0.7
3,444,076	+		PFLU_RS15360	0.42	-1.3
3,444,077	-		PFLU_RS15360	0.42	+0.6
3,444,113	+		PFLU_RS15360	0.45	-2.0
3,444,113	+		PFLU_RS15360	0.45	+0.5
3,444,113	+		PFLU_RS15360	0.45	-0.0
3,444,113	+		PFLU_RS15360	0.45	+0.2
3,444,113	+		PFLU_RS15360	0.45	-0.3
3,444,113	+		PFLU_RS15360	0.45	+0.4
3,444,113	+		PFLU_RS15360	0.45	+1.4
3,444,114	-		PFLU_RS15360	0.46	+0.6
3,444,114	-		PFLU_RS15360	0.46	-1.3
3,444,114	-		PFLU_RS15360	0.46	+0.7
3,444,114	-		PFLU_RS15360	0.46	-2.0
3,444,115	+		PFLU_RS15360	0.46	+0.5
3,444,115	+		PFLU_RS15360	0.46	+0.7
3,444,115	+		PFLU_RS15360	0.46	-0.1
3,444,116	-		PFLU_RS15360	0.46	-0.4
3,444,116	-		PFLU_RS15360	0.46	+1.8
3,444,116	-		PFLU_RS15360	0.46	-0.8
3,444,116	-		PFLU_RS15360	0.46	-0.3
3,444,154	+		PFLU_RS15360	0.49	+1.4
3,444,154	+		PFLU_RS15360	0.49	-0.2
3,444,154	+		PFLU_RS15360	0.49	-1.0
3,444,154	+		PFLU_RS15360	0.49	+0.6
3,444,154	+		PFLU_RS15360	0.49	-0.2
3,444,154	+		PFLU_RS15360	0.49	+1.7
3,444,154	+		PFLU_RS15360	0.49	-0.4
3,444,154	+		PFLU_RS15360	0.49	+0.8
3,444,154	+		PFLU_RS15360	0.49	+0.6
3,444,154	+		PFLU_RS15360	0.49	-0.1
3,444,155	-		PFLU_RS15360	0.49	+1.0
3,444,155	-		PFLU_RS15360	0.49	-0.5
3,444,246	+		PFLU_RS15360	0.58	-1.0
3,444,247	-		PFLU_RS15360	0.58	-1.5
3,444,247	-		PFLU_RS15360	0.58	+0.8
3,444,308	-		PFLU_RS15360	0.64	+2.2
3,444,308	-		PFLU_RS15360	0.64	-2.2
3,444,308	-		PFLU_RS15360	0.64	-0.6
3,444,334	+		PFLU_RS15360	0.66	-2.4
3,444,334	+		PFLU_RS15360	0.66	-2.4
3,444,547	+		PFLU_RS15360	0.86	+0.3
3,444,547	+		PFLU_RS15360	0.86	-0.5
3,444,547	+		PFLU_RS15360	0.86	+1.7
3,444,548	-		PFLU_RS15360	0.86	-0.2
3,444,548	-		PFLU_RS15360	0.86	+1.0
3,444,548	-		PFLU_RS15360	0.86	+0.0
3,444,548	-		PFLU_RS15360	0.86	+0.1
3,444,548	-		PFLU_RS15360	0.86	-1.3
3,444,556	+		PFLU_RS15360	0.86	+0.6
3,444,556	+		PFLU_RS15360	0.86	+0.9
3,444,613	+				-0.2
3,444,613	+				+0.4
3,444,613	+				+0.2
3,444,613	+				+0.2
3,444,613	+				-2.4
3,444,614	-				+0.6
3,444,614	-				+0.3
3,444,614	-				-0.5
3,444,614	-				-1.3
3,444,629	-				+0.0
3,444,774	+				-0.2
3,444,775	-				+1.0
3,444,775	-				-1.5
3,444,778	+				+0.4
3,444,778	+				+0.1
3,444,778	+				-0.1
3,444,778	+				-0.3
3,444,778	+				+0.6
3,444,778	+				+0.9
3,444,778	+				+1.0
3,444,778	+				+0.0
3,444,778	+				+0.2
3,444,778	+				+0.2
3,444,779	-				-1.5
3,444,779	-				+1.0
3,444,779	-				-0.3
3,444,779	-				+0.0
3,444,779	-				-0.4
3,444,779	-				+1.5
3,444,779	-				-0.2
3,444,779	-				+0.5
3,444,779	-				+1.8
3,444,779	-				-2.0
3,444,855	+		PFLU_RS15365	0.27	-0.2
3,444,855	+		PFLU_RS15365	0.27	-0.8
3,444,855	+		PFLU_RS15365	0.27	+0.4
3,444,855	+		PFLU_RS15365	0.27	+0.5
3,444,855	+		PFLU_RS15365	0.27	-0.8
3,444,855	+		PFLU_RS15365	0.27	-0.4
3,444,855	+		PFLU_RS15365	0.27	+0.3
3,444,855	+		PFLU_RS15365	0.27	-1.0
3,444,855	+		PFLU_RS15365	0.27	-0.3
3,444,855	+		PFLU_RS15365	0.27	+1.0
3,444,855	+		PFLU_RS15365	0.27	+1.8
3,444,855	+		PFLU_RS15365	0.27	-3.4
3,444,855	+		PFLU_RS15365	0.27	+0.0
3,444,856	-		PFLU_RS15365	0.27	+0.4
3,444,856	-		PFLU_RS15365	0.27	-0.7
3,444,856	-		PFLU_RS15365	0.27	+1.7
3,444,856	-		PFLU_RS15365	0.27	+0.3
3,444,856	-		PFLU_RS15365	0.27	-2.0
3,444,856	-		PFLU_RS15365	0.27	-0.8
3,444,856	-		PFLU_RS15365	0.27	+0.3
3,444,856	-		PFLU_RS15365	0.27	-1.8
3,444,856	-		PFLU_RS15365	0.27	-0.1
3,444,856	-		PFLU_RS15365	0.27	-0.3
3,444,856	-		PFLU_RS15365	0.27	-0.2
3,444,856	-		PFLU_RS15365	0.27	+0.2
3,444,856	-		PFLU_RS15365	0.27	+0.4
3,444,856	-		PFLU_RS15365	0.27	-1.1
3,444,856	-		PFLU_RS15365	0.27	+0.1
3,445,131	+				-1.9
3,445,131	+				-2.0
3,445,131	+				+0.2
3,445,131	+				+0.9
3,445,251	+				+0.0
3,445,252	-				+0.4
3,445,252	-				+0.2
3,445,508	-		PFLU_RS15370	0.27	+1.4
3,445,668	+		PFLU_RS15370	0.38	+0.3
3,445,668	+		PFLU_RS15370	0.38	-1.0
3,445,668	+		PFLU_RS15370	0.38	+0.0
3,445,669	-		PFLU_RS15370	0.38	+0.0
3,445,669	-		PFLU_RS15370	0.38	+0.5
3,445,732	+		PFLU_RS15370	0.43	-3.4
3,445,816	-		PFLU_RS15370	0.49	+0.0
3,445,995	+		PFLU_RS15370	0.61	+0.0
3,445,996	-		PFLU_RS15370	0.62	+0.1
3,445,996	-		PFLU_RS15370	0.62	+1.4
3,445,996	-		PFLU_RS15370	0.62	+0.3
3,445,996	-		PFLU_RS15370	0.62	+0.3
3,446,008	-		PFLU_RS15370	0.62	-3.0
3,446,088	+		PFLU_RS15370	0.68	+0.3
3,446,088	+		PFLU_RS15370	0.68	+0.2
3,446,088	+		PFLU_RS15370	0.68	+0.1
3,446,088	+		PFLU_RS15370	0.68	+0.4
3,446,089	-		PFLU_RS15370	0.68	+0.2
3,446,089	-		PFLU_RS15370	0.68	+0.3
3,446,089	-		PFLU_RS15370	0.68	+1.7
3,446,089	-		PFLU_RS15370	0.68	+0.8
3,446,089	-		PFLU_RS15370	0.68	+0.8