Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08985

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
1,993,135	+		PFLU_RS08980	0.41	+2.7
1,993,135	+		PFLU_RS08980	0.41	+1.1
1,993,135	+		PFLU_RS08980	0.41	+2.2
1,993,135	+		PFLU_RS08980	0.41	+1.1
1,993,135	+		PFLU_RS08980	0.41	+0.6
1,993,136	-		PFLU_RS08980	0.41	+1.3
1,993,136	-		PFLU_RS08980	0.41	+0.5
1,993,136	-		PFLU_RS08980	0.41	+0.7
1,993,164	+		PFLU_RS08980	0.43	-0.2
1,993,164	+		PFLU_RS08980	0.43	+0.6
1,993,165	-		PFLU_RS08980	0.43	+1.3
1,993,165	-		PFLU_RS08980	0.43	+1.6
1,993,174	+		PFLU_RS08980	0.44	+1.0
1,993,174	+		PFLU_RS08980	0.44	-0.3
1,993,174	+		PFLU_RS08980	0.44	+0.2
1,993,174	+		PFLU_RS08980	0.44	-0.1
1,993,175	-		PFLU_RS08980	0.44	-1.9
1,993,205	+		PFLU_RS08980	0.46	-0.9
1,993,205	+		PFLU_RS08980	0.46	-0.5
1,993,205	+		PFLU_RS08980	0.46	+2.0
1,993,205	+		PFLU_RS08980	0.46	+0.6
1,993,206	-		PFLU_RS08980	0.46	-0.4
1,993,321	+		PFLU_RS08980	0.55	-0.7
1,993,321	+		PFLU_RS08980	0.55	-0.1
1,993,321	+		PFLU_RS08980	0.55	+1.4
1,993,321	+		PFLU_RS08980	0.55	-0.7
1,993,321	+		PFLU_RS08980	0.55	+1.9
1,993,321	+		PFLU_RS08980	0.55	-0.6
1,993,321	+		PFLU_RS08980	0.55	+1.3
1,993,321	+		PFLU_RS08980	0.55	+1.6
1,993,321	+		PFLU_RS08980	0.55	+0.3
1,993,321	+		PFLU_RS08980	0.55	+1.4
1,993,321	+		PFLU_RS08980	0.55	-1.6
1,993,321	+		PFLU_RS08980	0.55	+2.0
1,993,321	+		PFLU_RS08980	0.55	+0.8
1,993,321	+		PFLU_RS08980	0.55	+0.3
1,993,321	+		PFLU_RS08980	0.55	+0.6
1,993,322	-		PFLU_RS08980	0.55	+1.0
1,993,322	-		PFLU_RS08980	0.55	-0.4
1,993,322	-		PFLU_RS08980	0.55	+1.2
1,993,322	-		PFLU_RS08980	0.55	-0.5
1,993,322	-		PFLU_RS08980	0.55	-2.0
1,993,322	-		PFLU_RS08980	0.55	+1.2
1,993,322	-		PFLU_RS08980	0.55	-0.3
1,993,322	-		PFLU_RS08980	0.55	+0.7
1,993,322	-		PFLU_RS08980	0.55	-0.2
1,993,322	-		PFLU_RS08980	0.55	+0.2
1,993,322	-		PFLU_RS08980	0.55	+0.3
1,993,322	-		PFLU_RS08980	0.55	+0.5
1,993,322	-		PFLU_RS08980	0.55	-1.4
1,993,322	-		PFLU_RS08980	0.55	+1.0
1,993,322	-		PFLU_RS08980	0.55	-1.2
1,993,322	-		PFLU_RS08980	0.55	+0.3
1,993,322	-		PFLU_RS08980	0.55	-0.2
1,993,322	-		PFLU_RS08980	0.55	+1.0
1,993,323	+		PFLU_RS08980	0.55	-1.2
1,993,323	+		PFLU_RS08980	0.55	+0.6
1,993,323	+		PFLU_RS08980	0.55	-0.1
1,993,323	+		PFLU_RS08980	0.55	-0.4
1,993,323	+		PFLU_RS08980	0.55	+2.2
1,993,323	+		PFLU_RS08980	0.55	+0.8
1,993,324	-		PFLU_RS08980	0.55	-1.5
1,993,324	-		PFLU_RS08980	0.55	+0.6
1,993,402	+		PFLU_RS08980	0.61	-1.2
1,993,402	+		PFLU_RS08980	0.61	-0.1
1,993,402	+		PFLU_RS08980	0.61	-0.2
1,993,402	+		PFLU_RS08980	0.61	+0.6
1,993,402	+		PFLU_RS08980	0.61	+0.5
1,993,402	+		PFLU_RS08980	0.61	+0.4
1,993,402	+		PFLU_RS08980	0.61	+0.6
1,993,403	-		PFLU_RS08980	0.61	-0.7
1,993,403	-		PFLU_RS08980	0.61	+0.5
1,993,403	-		PFLU_RS08980	0.61	+0.2
1,993,507	+		PFLU_RS08980	0.69	+0.7
1,993,508	-		PFLU_RS08980	0.69	+1.1
1,993,508	-		PFLU_RS08980	0.69	-0.6
1,993,508	-		PFLU_RS08980	0.69	+2.1
1,993,508	-		PFLU_RS08980	0.69	-0.1
1,993,508	-		PFLU_RS08980	0.69	-0.5
1,993,508	-		PFLU_RS08980	0.69	+0.3
1,993,534	+		PFLU_RS08980	0.71	-0.7
1,993,534	+		PFLU_RS08980	0.71	+1.7
1,993,534	+		PFLU_RS08980	0.71	-0.5
1,993,535	-		PFLU_RS08980	0.71	+0.5
1,993,535	-		PFLU_RS08980	0.71	+0.2
1,993,535	-		PFLU_RS08980	0.71	+0.2
1,993,878	+				-0.1
1,993,878	+				-0.1
1,993,878	+				-1.5
1,993,878	+				-0.4
1,993,879	-				+0.7
1,993,879	-				-0.3
1,993,879	-				-1.0
1,993,910	-				+0.6
1,993,910	-				+0.1
1,993,910	-				+0.1
1,993,910	-				+0.7
1,993,927	+				+0.0
1,993,952	+				+0.4
1,993,999	+				-0.3
1,993,999	+				+1.7
1,993,999	+				-1.6
1,994,014	+				+1.2
1,994,015	-				+1.1
1,994,024	-				-0.3
1,994,095	+				+0.0
1,994,095	+				+0.8
1,994,095	+				-2.3
1,994,096	-				-0.7
1,994,096	-				+0.4
1,994,096	-				+0.4
1,994,177	+				-0.5
1,994,178	-				+0.2
1,994,241	-		PFLU_RS08985	0.18	+0.4
1,994,344	+		PFLU_RS08985	0.32	+0.6
1,994,365	+		PFLU_RS08985	0.35	+0.3
1,994,490	-		PFLU_RS08985	0.52	+0.0
1,994,490	-		PFLU_RS08985	0.52	-0.0
1,994,490	-		PFLU_RS08985	0.52	+0.1
1,994,525	+		PFLU_RS08985	0.57	-0.3
1,994,525	+		PFLU_RS08985	0.57	-0.2
1,994,525	+		PFLU_RS08985	0.57	+0.2
1,994,525	+		PFLU_RS08985	0.57	-0.9
1,994,525	+		PFLU_RS08985	0.57	-0.5
1,994,526	-		PFLU_RS08985	0.57	+0.4
1,994,669	+		PFLU_RS08985	0.76	+0.3
1,994,670	-		PFLU_RS08985	0.76	-0.2
1,994,672	+		PFLU_RS08985	0.76	+0.6
1,994,672	+		PFLU_RS08985	0.76	-1.6
1,994,672	+		PFLU_RS08985	0.76	-2.0
1,994,672	+		PFLU_RS08985	0.76	+0.1
1,994,672	+		PFLU_RS08985	0.76	-0.8
1,994,673	-		PFLU_RS08985	0.77	-0.1
1,994,673	-		PFLU_RS08985	0.77	-0.3
1,994,673	-		PFLU_RS08985	0.77	+1.2
1,994,673	-		PFLU_RS08985	0.77	+0.4
1,994,673	-		PFLU_RS08985	0.77	-0.7
1,994,715	+		PFLU_RS08985	0.82	+1.5
1,994,715	+		PFLU_RS08985	0.82	-1.1
1,994,739	+		PFLU_RS08985	0.86	-1.5
1,994,739	+		PFLU_RS08985	0.86	+0.8
1,994,748	+		PFLU_RS08985	0.87	+0.3
1,994,748	+		PFLU_RS08985	0.87	+0.0
1,994,748	+		PFLU_RS08985	0.87	+0.6
1,994,749	-		PFLU_RS08985	0.87	-0.6
1,994,750	-		PFLU_RS08985	0.87	-1.5
1,994,753	+		PFLU_RS08985	0.87	-0.8
1,994,753	+		PFLU_RS08985	0.87	-0.6
1,994,753	+		PFLU_RS08985	0.87	-1.2
1,994,753	+		PFLU_RS08985	0.87	-0.6
1,994,753	+		PFLU_RS08985	0.87	+0.6
1,994,778	+				+0.2
1,994,778	+				-0.3
1,994,778	+				+1.6
1,994,779	-				+0.4
1,994,779	-				+1.2
1,994,795	+				-0.5
1,994,795	+				+0.8
1,994,795	+				-1.3
1,994,795	+				+0.9
1,994,795	+				-0.1
1,994,795	+				-0.7
1,994,795	+				+1.1
1,994,795	+				+0.7
1,994,795	+				+0.5
1,994,795	+				+0.0
1,994,795	+				+0.2
1,994,796	-				-0.4
1,994,796	-				+1.3
1,994,796	-				+2.2
1,994,796	-				+0.4
1,994,796	-				+0.6
1,994,796	-				-0.6
1,994,796	-				+0.6
1,994,796	-				+1.0
1,994,796	-				-1.2
1,994,796	-				+0.1
1,994,796	-				-2.8
1,994,796	-				-1.5
1,994,797	+				+0.4
1,994,797	+				-2.0
1,994,797	+				-1.5
1,994,797	+				+0.6
1,994,797	+				-1.5
1,994,798	-				-0.6
1,994,798	-				+0.7
1,994,798	-				+1.5
1,994,809	+				-0.4
1,994,809	+				-2.4
1,994,810	-				+1.3
1,994,810	-				-0.4
1,994,810	-				+1.0
1,994,843	+				+0.9
1,994,843	+				-1.8
1,994,844	-				-0.1
1,994,848	-				+2.3
1,994,891	+				+0.2
1,994,891	+				-0.5
1,994,891	+				-0.9
1,994,892	-				+1.1
1,994,892	-				-0.1
1,994,919	+				-0.3
1,994,919	+				+0.1
1,994,920	-				+0.2
1,994,956	+				+0.9
1,994,956	+				-0.3
1,994,956	+				-0.4
1,994,956	+				+0.9
1,995,064	+		PFLU_RS08990	0.51	-1.6
1,995,065	-		PFLU_RS08990	0.51	+0.5
1,995,169	+				+0.2
1,995,169	+				-0.2
1,995,169	+				+0.5
1,995,169	+				+1.0
1,995,173	+				-0.2
1,995,173	+				+0.5
1,995,173	+				+1.0
1,995,174	-				+0.4
1,995,174	-				+1.4
1,995,174	-				+0.1
1,995,175	-				-0.9
1,995,203	-				+1.9
1,995,211	+				-1.2
1,995,211	+				-0.2
1,995,211	+				+0.4
1,995,212	-				-0.3
1,995,212	-				-0.0
1,995,212	-				-0.0
1,995,215	+				+0.0
1,995,216	-				-0.8
1,995,216	-				+1.6
1,995,216	-				+0.2
1,995,216	-				-0.6
1,995,256	+				-0.3
1,995,267	+				-1.3
1,995,267	+				-2.0
1,995,267	+				+0.9
1,995,268	-				+0.7
1,995,269	+				+0.5
1,995,269	+				-1.0
1,995,269	+				-0.5
1,995,269	+				-4.1
1,995,269	+				+0.4
1,995,269	+				-0.1
1,995,270	-				-0.9
1,995,270	-				+1.0
1,995,270	-				-0.1
1,995,270	-				-1.2
1,995,271	+				+0.2
1,995,271	+				+0.3
1,995,272	-				+0.3
1,995,272	-				-0.0
1,995,318	+				-0.3
1,995,319	-				+0.3
1,995,330	+				-0.6
1,995,330	+				+0.3
1,995,331	-				+0.8
1,995,331	-				-1.0
1,995,331	-				+1.8
1,995,331	-				+0.4
1,995,365	+				-0.4
1,995,366	-				+0.3
1,995,386	+				-0.3
1,995,411	-		PFLU_RS08995	0.14	+0.3
1,995,411	-		PFLU_RS08995	0.14	-0.1
1,995,427	+		PFLU_RS08995	0.17	-1.1
1,995,428	-		PFLU_RS08995	0.17	+0.5
1,995,428	-		PFLU_RS08995	0.17	+1.0
1,995,466	+		PFLU_RS08995	0.25	-0.2
1,995,466	+		PFLU_RS08995	0.25	+1.2
1,995,466	+		PFLU_RS08995	0.25	+0.1
1,995,466	+		PFLU_RS08995	0.25	+0.6
1,995,466	+		PFLU_RS08995	0.25	+0.0
1,995,466	+		PFLU_RS08995	0.25	-0.6
1,995,466	+		PFLU_RS08995	0.25	+0.3
1,995,466	+		PFLU_RS08995	0.25	-1.7
1,995,466	+		PFLU_RS08995	0.25	-0.2
1,995,467	-		PFLU_RS08995	0.25	+0.8
1,995,467	-		PFLU_RS08995	0.25	-0.1
1,995,613	+		PFLU_RS08995	0.56	-1.3
1,995,613	+		PFLU_RS08995	0.56	+0.2
1,995,613	+		PFLU_RS08995	0.56	+0.3
1,995,613	+		PFLU_RS08995	0.56	+1.3
1,995,613	+		PFLU_RS08995	0.56	+0.8
1,995,613	+		PFLU_RS08995	0.56	+0.4
1,995,613	+		PFLU_RS08995	0.56	-2.0
1,995,613	+		PFLU_RS08995	0.56	-0.6
1,995,613	+		PFLU_RS08995	0.56	+0.8
1,995,613	+		PFLU_RS08995	0.56	+0.0
1,995,613	+		PFLU_RS08995	0.56	-1.1
1,995,613	+		PFLU_RS08995	0.56	-1.1
1,995,614	-		PFLU_RS08995	0.56	+1.8
1,995,614	-		PFLU_RS08995	0.56	-1.0
1,995,614	-		PFLU_RS08995	0.56	+0.2
1,995,614	-		PFLU_RS08995	0.56	+0.9
1,995,614	-		PFLU_RS08995	0.56	-0.3
1,995,647	-		PFLU_RS08995	0.63	-1.3
1,995,647	-		PFLU_RS08995	0.63	+0.5
1,995,706	+		PFLU_RS08995	0.75	+0.0
1,995,707	-		PFLU_RS08995	0.76	-0.2
1,995,752	-		PFLU_RS08995	0.85	-0.2