Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06320

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS06315 and PFLU_RS06320 are separated by 45 nucleotidesPFLU_RS06320 and PFLU_RS06325 are separated by 3 nucleotides PFLU_RS06315: PFLU_RS06315 - outer membrane protein assembly factor BamA, at 1,413,698 to 1,416,085 _RS06315 PFLU_RS06320: PFLU_RS06320 - OmpH family outer membrane protein, at 1,416,131 to 1,416,634 _RS06320 PFLU_RS06325: PFLU_RS06325 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,416,638 to 1,417,693 _RS06325 Position (kb) 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1at 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.083 kb on + strandat 1416.101 kb on + strandat 1416.101 kb on + strandat 1416.101 kb on + strandat 1416.119 kb on + strandat 1416.218 kb on + strand, within PFLU_RS06320at 1416.218 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320at 1416.257 kb on + strand, within PFLU_RS06320

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,416,083 + -0.4
1,416,083 + -0.6
1,416,083 + -0.2
1,416,083 + +0.5
1,416,083 + -0.5
1,416,083 + +0.5
1,416,101 + -0.2
1,416,101 + -0.6
1,416,101 + +0.9
1,416,119 + -0.4
1,416,218 + PFLU_RS06320 0.17 -3.0
1,416,218 + PFLU_RS06320 0.17 -1.8
1,416,257 + PFLU_RS06320 0.25 -0.6
1,416,257 + PFLU_RS06320 0.25 -0.1
1,416,257 + PFLU_RS06320 0.25 -2.9
1,416,257 + PFLU_RS06320 0.25 -2.3
1,416,257 + PFLU_RS06320 0.25 -1.1
1,416,257 + PFLU_RS06320 0.25 -2.2

Or see this region's nucleotide sequence