Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00790

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00780 and PFLU_RS00785 are separated by 39 nucleotidesPFLU_RS00785 and PFLU_RS00790 are separated by 71 nucleotidesPFLU_RS00790 and PFLU_RS00795 are separated by 32 nucleotidesPFLU_RS00795 and PFLU_RS00800 are separated by 7 nucleotides PFLU_RS00780: PFLU_RS00780 - SMI1/KNR4 family protein, at 177,578 to 178,027 _RS00780 PFLU_RS00785: PFLU_RS00785 - signal peptidase I, at 178,067 to 178,855 _RS00785 PFLU_RS00790: PFLU_RS00790 - hypothetical protein, at 178,927 to 179,268 _RS00790 PFLU_RS00795: PFLU_RS00795 - RDD family protein, at 179,301 to 179,774 _RS00795 PFLU_RS00800: PFLU_RS00800 - RDD family protein, at 179,782 to 180,216 _RS00800 Position (kb) 178 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.002 kb on - strandat 178.025 kb on + strandat 178.025 kb on + strandat 178.025 kb on + strandat 178.025 kb on + strandat 178.026 kb on - strandat 178.026 kb on - strandat 178.026 kb on - strandat 178.052 kb on + strandat 178.055 kb on + strandat 178.077 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.136 kb on + strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.137 kb on - strandat 178.181 kb on + strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.182 kb on - strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.238 kb on + strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.239 kb on - strand, within PFLU_RS00785at 178.354 kb on - strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.355 kb on + strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.356 kb on - strand, within PFLU_RS00785at 178.430 kb on + strand, within PFLU_RS00785at 178.431 kb on - strand, within PFLU_RS00785at 178.431 kb on - strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.433 kb on + strand, within PFLU_RS00785at 178.434 kb on - strand, within PFLU_RS00785at 178.434 kb on - strand, within PFLU_RS00785at 178.434 kb on - strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.478 kb on + strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.479 kb on - strand, within PFLU_RS00785at 178.522 kb on + strand, within PFLU_RS00785at 178.532 kb on + strand, within PFLU_RS00785at 178.532 kb on + strand, within PFLU_RS00785at 178.533 kb on - strand, within PFLU_RS00785at 178.586 kb on - strand, within PFLU_RS00785at 178.586 kb on - strand, within PFLU_RS00785at 178.718 kb on + strand, within PFLU_RS00785at 178.718 kb on + strand, within PFLU_RS00785at 178.719 kb on - strand, within PFLU_RS00785at 178.719 kb on - strand, within PFLU_RS00785at 178.719 kb on - strand, within PFLU_RS00785at 178.742 kb on - strand, within PFLU_RS00785at 178.742 kb on - strand, within PFLU_RS00785at 178.762 kb on + strand, within PFLU_RS00785at 178.762 kb on + strand, within PFLU_RS00785at 178.840 kb on + strandat 178.840 kb on + strandat 178.840 kb on + strandat 178.840 kb on + strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.841 kb on - strandat 178.967 kb on - strand, within PFLU_RS00790at 179.137 kb on + strand, within PFLU_RS00790at 179.137 kb on + strand, within PFLU_RS00790at 179.138 kb on - strand, within PFLU_RS00790at 179.138 kb on - strand, within PFLU_RS00790at 179.138 kb on - strand, within PFLU_RS00790at 179.138 kb on - strand, within PFLU_RS00790at 179.138 kb on - strand, within PFLU_RS00790at 179.216 kb on - strand, within PFLU_RS00790at 179.266 kb on + strandat 179.266 kb on + strandat 179.266 kb on + strandat 179.266 kb on + strandat 179.267 kb on - strandat 179.267 kb on - strandat 179.267 kb on - strandat 179.292 kb on + strandat 179.292 kb on + strandat 179.292 kb on + strandat 179.293 kb on - strandat 179.301 kb on - strandat 179.312 kb on + strandat 179.312 kb on + strandat 179.312 kb on + strandat 179.312 kb on + strandat 179.312 kb on + strandat 179.312 kb on + strandat 179.312 kb on + strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.313 kb on - strandat 179.415 kb on + strand, within PFLU_RS00795at 179.415 kb on + strand, within PFLU_RS00795at 179.415 kb on + strand, within PFLU_RS00795at 179.415 kb on + strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.416 kb on - strand, within PFLU_RS00795at 179.417 kb on + strand, within PFLU_RS00795at 179.417 kb on + strand, within PFLU_RS00795at 179.417 kb on + strand, within PFLU_RS00795at 179.417 kb on + strand, within PFLU_RS00795at 179.417 kb on + strand, within PFLU_RS00795at 179.417 kb on + strand, within PFLU_RS00795at 179.418 kb on - strand, within PFLU_RS00795at 179.418 kb on - strand, within PFLU_RS00795at 179.418 kb on - strand, within PFLU_RS00795at 179.439 kb on + strand, within PFLU_RS00795at 179.439 kb on + strand, within PFLU_RS00795at 179.439 kb on + strand, within PFLU_RS00795at 179.439 kb on + strand, within PFLU_RS00795at 179.439 kb on + strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.440 kb on - strand, within PFLU_RS00795at 179.499 kb on + strand, within PFLU_RS00795at 179.499 kb on + strand, within PFLU_RS00795at 179.612 kb on + strand, within PFLU_RS00795at 179.754 kb on + strandat 179.773 kb on - strandat 179.782 kb on - strandat 179.848 kb on + strand, within PFLU_RS00800at 179.848 kb on + strand, within PFLU_RS00800at 179.849 kb on - strand, within PFLU_RS00800at 179.849 kb on - strand, within PFLU_RS00800at 179.849 kb on - strand, within PFLU_RS00800at 179.905 kb on + strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.906 kb on - strand, within PFLU_RS00800at 179.911 kb on + strand, within PFLU_RS00800at 179.912 kb on - strand, within PFLU_RS00800at 179.962 kb on + strand, within PFLU_RS00800at 179.962 kb on + strand, within PFLU_RS00800at 179.962 kb on + strand, within PFLU_RS00800at 179.962 kb on + strand, within PFLU_RS00800at 179.963 kb on - strand, within PFLU_RS00800at 179.963 kb on - strand, within PFLU_RS00800at 179.963 kb on - strand, within PFLU_RS00800at 179.963 kb on - strand, within PFLU_RS00800at 179.963 kb on - strand, within PFLU_RS00800at 179.978 kb on + strand, within PFLU_RS00800at 179.978 kb on + strand, within PFLU_RS00800at 179.989 kb on + strand, within PFLU_RS00800at 180.109 kb on - strand, within PFLU_RS00800at 180.109 kb on - strand, within PFLU_RS00800at 180.133 kb on - strand, within PFLU_RS00800at 180.183 kb on + strandat 180.183 kb on + strandat 180.183 kb on + strandat 180.183 kb on + strandat 180.184 kb on - strandat 180.235 kb on - strandat 180.235 kb on - strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.238 kb on + strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strandat 180.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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178,002 - +1.6
178,025 + -1.5
178,025 + +0.4
178,025 + +1.2
178,025 + -0.6
178,026 - -0.4
178,026 - +0.6
178,026 - -1.0
178,052 + -0.6
178,055 + -0.2
178,077 + +0.1
178,136 + +0.0
178,136 + +1.0
178,136 + +0.3
178,136 + -0.6
178,136 + -1.8
178,137 - +0.5
178,137 - +0.9
178,137 - -0.8
178,137 - -1.8
178,137 - +0.4
178,137 - -1.4
178,137 - +0.7
178,181 + PFLU_RS00785 0.14 +0.7
178,182 - PFLU_RS00785 0.15 +0.1
178,182 - PFLU_RS00785 0.15 +0.7
178,182 - PFLU_RS00785 0.15 -1.4
178,182 - PFLU_RS00785 0.15 +0.4
178,182 - PFLU_RS00785 0.15 +2.2
178,238 + PFLU_RS00785 0.22 -1.1
178,238 + PFLU_RS00785 0.22 +0.2
178,238 + PFLU_RS00785 0.22 +0.3
178,238 + PFLU_RS00785 0.22 +0.5
178,238 + PFLU_RS00785 0.22 -0.8
178,238 + PFLU_RS00785 0.22 -1.0
178,238 + PFLU_RS00785 0.22 +1.4
178,238 + PFLU_RS00785 0.22 -0.1
178,238 + PFLU_RS00785 0.22 -0.0
178,238 + PFLU_RS00785 0.22 +0.1
178,239 - PFLU_RS00785 0.22 -1.3
178,239 - PFLU_RS00785 0.22 +0.6
178,239 - PFLU_RS00785 0.22 +0.9
178,239 - PFLU_RS00785 0.22 -0.4
178,239 - PFLU_RS00785 0.22 +0.1
178,239 - PFLU_RS00785 0.22 -1.6
178,354 - PFLU_RS00785 0.36 -1.1
178,355 + PFLU_RS00785 0.37 +0.2
178,355 + PFLU_RS00785 0.37 -0.2
178,355 + PFLU_RS00785 0.37 +0.7
178,355 + PFLU_RS00785 0.37 +0.3
178,355 + PFLU_RS00785 0.37 +2.2
178,355 + PFLU_RS00785 0.37 -0.6
178,355 + PFLU_RS00785 0.37 -1.1
178,355 + PFLU_RS00785 0.37 -0.3
178,355 + PFLU_RS00785 0.37 +0.0
178,355 + PFLU_RS00785 0.37 -0.5
178,355 + PFLU_RS00785 0.37 +0.4
178,356 - PFLU_RS00785 0.37 +0.5
178,356 - PFLU_RS00785 0.37 +0.9
178,356 - PFLU_RS00785 0.37 -1.1
178,356 - PFLU_RS00785 0.37 -0.1
178,356 - PFLU_RS00785 0.37 -0.4
178,356 - PFLU_RS00785 0.37 -0.2
178,430 + PFLU_RS00785 0.46 -0.1
178,431 - PFLU_RS00785 0.46 -0.9
178,431 - PFLU_RS00785 0.46 +0.0
178,433 + PFLU_RS00785 0.46 -0.3
178,433 + PFLU_RS00785 0.46 +0.5
178,433 + PFLU_RS00785 0.46 -0.3
178,433 + PFLU_RS00785 0.46 +0.2
178,433 + PFLU_RS00785 0.46 +0.4
178,434 - PFLU_RS00785 0.47 -0.1
178,434 - PFLU_RS00785 0.47 +1.0
178,434 - PFLU_RS00785 0.47 -1.7
178,478 + PFLU_RS00785 0.52 -0.8
178,478 + PFLU_RS00785 0.52 -0.6
178,478 + PFLU_RS00785 0.52 +0.7
178,478 + PFLU_RS00785 0.52 -0.2
178,478 + PFLU_RS00785 0.52 -0.5
178,478 + PFLU_RS00785 0.52 -2.3
178,478 + PFLU_RS00785 0.52 -0.2
178,479 - PFLU_RS00785 0.52 +0.2
178,479 - PFLU_RS00785 0.52 -1.6
178,479 - PFLU_RS00785 0.52 -0.9
178,479 - PFLU_RS00785 0.52 +0.2
178,522 + PFLU_RS00785 0.58 +0.1
178,532 + PFLU_RS00785 0.59 -0.5
178,532 + PFLU_RS00785 0.59 +0.2
178,533 - PFLU_RS00785 0.59 +1.0
178,586 - PFLU_RS00785 0.66 -0.0
178,586 - PFLU_RS00785 0.66 -0.7
178,718 + PFLU_RS00785 0.83 -0.4
178,718 + PFLU_RS00785 0.83 -1.3
178,719 - PFLU_RS00785 0.83 +0.5
178,719 - PFLU_RS00785 0.83 -0.5
178,719 - PFLU_RS00785 0.83 +0.4
178,742 - PFLU_RS00785 0.86 -0.1
178,742 - PFLU_RS00785 0.86 +0.5
178,762 + PFLU_RS00785 0.88 +2.0
178,762 + PFLU_RS00785 0.88 -0.1
178,840 + -1.5
178,840 + -0.2
178,840 + -0.5
178,840 + -0.5
178,841 - +0.5
178,841 - +0.6
178,841 - +1.0
178,841 - +0.9
178,841 - +1.8
178,967 - PFLU_RS00790 0.12 -2.2
179,137 + PFLU_RS00790 0.61 -1.1
179,137 + PFLU_RS00790 0.61 -0.2
179,138 - PFLU_RS00790 0.62 -0.4
179,138 - PFLU_RS00790 0.62 +0.5
179,138 - PFLU_RS00790 0.62 -0.9
179,138 - PFLU_RS00790 0.62 +0.3
179,138 - PFLU_RS00790 0.62 +0.2
179,216 - PFLU_RS00790 0.85 -1.1
179,266 + +0.5
179,266 + -0.7
179,266 + -0.5
179,266 + -0.3
179,267 - +0.0
179,267 - +0.1
179,267 - -0.2
179,292 + +0.6
179,292 + -2.0
179,292 + +0.7
179,293 - -1.5
179,301 - -0.7
179,312 + -0.3
179,312 + -0.3
179,312 + +0.1
179,312 + -0.0
179,312 + +2.7
179,312 + -1.1
179,312 + +0.5
179,313 - +0.8
179,313 - -0.3
179,313 - +0.6
179,313 - -0.2
179,313 - -0.1
179,313 - +0.3
179,313 - -0.0
179,313 - +0.5
179,415 + PFLU_RS00795 0.24 -0.0
179,415 + PFLU_RS00795 0.24 -0.5
179,415 + PFLU_RS00795 0.24 +1.2
179,415 + PFLU_RS00795 0.24 +0.4
179,416 - PFLU_RS00795 0.24 -1.6
179,416 - PFLU_RS00795 0.24 +1.9
179,416 - PFLU_RS00795 0.24 +0.7
179,416 - PFLU_RS00795 0.24 +0.1
179,416 - PFLU_RS00795 0.24 -1.9
179,416 - PFLU_RS00795 0.24 +0.8
179,416 - PFLU_RS00795 0.24 +2.0
179,416 - PFLU_RS00795 0.24 -0.3
179,416 - PFLU_RS00795 0.24 +0.2
179,416 - PFLU_RS00795 0.24 +0.1
179,416 - PFLU_RS00795 0.24 +0.2
179,416 - PFLU_RS00795 0.24 -1.1
179,416 - PFLU_RS00795 0.24 -2.9
179,417 + PFLU_RS00795 0.24 -0.4
179,417 + PFLU_RS00795 0.24 +0.6
179,417 + PFLU_RS00795 0.24 +0.6
179,417 + PFLU_RS00795 0.24 -0.2
179,417 + PFLU_RS00795 0.24 +1.5
179,417 + PFLU_RS00795 0.24 -0.1
179,418 - PFLU_RS00795 0.25 +0.4
179,418 - PFLU_RS00795 0.25 +0.1
179,418 - PFLU_RS00795 0.25 +1.6
179,439 + PFLU_RS00795 0.29 -0.7
179,439 + PFLU_RS00795 0.29 -0.5
179,439 + PFLU_RS00795 0.29 +0.6
179,439 + PFLU_RS00795 0.29 -0.1
179,439 + PFLU_RS00795 0.29 -0.2
179,440 - PFLU_RS00795 0.29 -0.2
179,440 - PFLU_RS00795 0.29 -0.7
179,440 - PFLU_RS00795 0.29 -1.8
179,440 - PFLU_RS00795 0.29 +0.0
179,440 - PFLU_RS00795 0.29 +0.5
179,440 - PFLU_RS00795 0.29 -1.5
179,440 - PFLU_RS00795 0.29 +0.4
179,440 - PFLU_RS00795 0.29 +0.4
179,440 - PFLU_RS00795 0.29 -0.5
179,440 - PFLU_RS00795 0.29 +0.3
179,499 + PFLU_RS00795 0.42 -2.2
179,499 + PFLU_RS00795 0.42 +0.3
179,612 + PFLU_RS00795 0.66 -0.0
179,754 + -0.1
179,773 - -0.6
179,782 - -0.3
179,848 + PFLU_RS00800 0.15 -0.4
179,848 + PFLU_RS00800 0.15 -1.0
179,849 - PFLU_RS00800 0.15 -1.0
179,849 - PFLU_RS00800 0.15 +0.0
179,849 - PFLU_RS00800 0.15 +0.6
179,905 + PFLU_RS00800 0.28 -1.3
179,906 - PFLU_RS00800 0.29 +0.9
179,906 - PFLU_RS00800 0.29 -0.0
179,906 - PFLU_RS00800 0.29 -0.4
179,906 - PFLU_RS00800 0.29 +0.6
179,906 - PFLU_RS00800 0.29 -0.1
179,906 - PFLU_RS00800 0.29 +0.0
179,906 - PFLU_RS00800 0.29 -2.8
179,911 + PFLU_RS00800 0.30 -0.4
179,912 - PFLU_RS00800 0.30 -0.3
179,962 + PFLU_RS00800 0.41 +0.3
179,962 + PFLU_RS00800 0.41 +0.3
179,962 + PFLU_RS00800 0.41 -0.1
179,962 + PFLU_RS00800 0.41 -0.0
179,963 - PFLU_RS00800 0.42 +1.1
179,963 - PFLU_RS00800 0.42 +0.1
179,963 - PFLU_RS00800 0.42 +2.7
179,963 - PFLU_RS00800 0.42 -1.2
179,963 - PFLU_RS00800 0.42 +0.1
179,978 + PFLU_RS00800 0.45 +0.8
179,978 + PFLU_RS00800 0.45 -0.1
179,989 + PFLU_RS00800 0.48 +0.1
180,109 - PFLU_RS00800 0.75 +0.6
180,109 - PFLU_RS00800 0.75 +0.1
180,133 - PFLU_RS00800 0.81 +0.2
180,183 + -0.0
180,183 + -0.3
180,183 + -0.1
180,183 + +0.3
180,184 - +1.4
180,235 - -0.4
180,235 - -0.4
180,238 + -1.0
180,238 + +0.1
180,238 + +1.2
180,238 + -0.5
180,238 + -0.9
180,238 + -0.8
180,238 + -0.7
180,238 + -0.3
180,238 + +0.7
180,239 - -0.3
180,239 - -1.0
180,239 - +0.4
180,239 - +0.1
180,239 - +1.7
180,239 - -0.6
180,239 - +0.1
180,239 - -0.6
180,239 - -0.6
180,239 - +0.8
180,239 - +0.3

Or see this region's nucleotide sequence