Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS00770

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS00765 and PFLU_RS00770 are separated by 470 nucleotidesPFLU_RS00770 and PFLU_RS00775 are separated by 25 nucleotidesPFLU_RS00775 and PFLU_RS00780 are separated by 144 nucleotides PFLU_RS00765: PFLU_RS00765 - hypothetical protein, at 175,182 to 176,000 _RS00765 PFLU_RS00770: PFLU_RS00770 - hypothetical protein, at 176,471 to 176,958 _RS00770 PFLU_RS00775: PFLU_RS00775 - hypothetical protein, at 176,984 to 177,433 _RS00775 PFLU_RS00780: PFLU_RS00780 - SMI1/KNR4 family protein, at 177,578 to 178,027 _RS00780 Position (kb) 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.473 kb on - strand, within PFLU_RS00765at 175.473 kb on - strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.558 kb on + strand, within PFLU_RS00765at 175.559 kb on - strand, within PFLU_RS00765at 175.559 kb on - strand, within PFLU_RS00765at 175.559 kb on - strand, within PFLU_RS00765at 175.748 kb on + strand, within PFLU_RS00765at 175.848 kb on + strand, within PFLU_RS00765at 175.848 kb on + strand, within PFLU_RS00765at 175.848 kb on + strand, within PFLU_RS00765at 175.848 kb on + strand, within PFLU_RS00765at 175.848 kb on + strand, within PFLU_RS00765at 175.848 kb on + strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.849 kb on - strand, within PFLU_RS00765at 175.951 kb on + strandat 175.952 kb on - strandat 175.959 kb on + strandat 175.960 kb on - strandat 175.960 kb on - strandat 175.960 kb on - strandat 176.036 kb on + strandat 176.036 kb on + strandat 176.037 kb on - strandat 176.037 kb on - strandat 176.055 kb on + strandat 176.061 kb on - strandat 176.061 kb on - strandat 176.067 kb on + strandat 176.068 kb on - strandat 176.068 kb on - strandat 176.082 kb on + strandat 176.083 kb on - strandat 176.086 kb on + strandat 176.086 kb on + strandat 176.086 kb on + strandat 176.087 kb on - strandat 176.087 kb on - strandat 176.197 kb on - strandat 176.201 kb on + strandat 176.201 kb on + strandat 176.202 kb on - strandat 176.202 kb on - strandat 176.202 kb on - strandat 176.202 kb on - strandat 176.248 kb on + strandat 176.318 kb on + strandat 176.632 kb on - strand, within PFLU_RS00770at 176.709 kb on + strand, within PFLU_RS00770at 176.709 kb on + strand, within PFLU_RS00770at 176.716 kb on + strand, within PFLU_RS00770at 176.759 kb on + strand, within PFLU_RS00770at 176.760 kb on - strand, within PFLU_RS00770at 176.878 kb on + strand, within PFLU_RS00770at 176.898 kb on - strand, within PFLU_RS00770at 176.898 kb on - strand, within PFLU_RS00770at 176.949 kb on + strandat 177.049 kb on + strand, within PFLU_RS00775at 177.050 kb on - strand, within PFLU_RS00775at 177.221 kb on + strand, within PFLU_RS00775at 177.222 kb on - strand, within PFLU_RS00775at 177.222 kb on - strand, within PFLU_RS00775at 177.251 kb on + strand, within PFLU_RS00775at 177.252 kb on - strand, within PFLU_RS00775at 177.584 kb on + strandat 177.584 kb on + strandat 177.635 kb on + strand, within PFLU_RS00780at 177.660 kb on + strand, within PFLU_RS00780at 177.675 kb on + strand, within PFLU_RS00780at 177.675 kb on + strand, within PFLU_RS00780at 177.676 kb on - strand, within PFLU_RS00780at 177.725 kb on + strand, within PFLU_RS00780at 177.726 kb on - strand, within PFLU_RS00780at 177.777 kb on - strand, within PFLU_RS00780at 177.800 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.841 kb on + strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.842 kb on - strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.845 kb on + strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.846 kb on - strand, within PFLU_RS00780at 177.878 kb on + strand, within PFLU_RS00780at 177.879 kb on - strand, within PFLU_RS00780

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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175,473 - PFLU_RS00765 0.36 +0.9
175,473 - PFLU_RS00765 0.36 -0.4
175,558 + PFLU_RS00765 0.46 -0.0
175,558 + PFLU_RS00765 0.46 +0.6
175,558 + PFLU_RS00765 0.46 +0.0
175,558 + PFLU_RS00765 0.46 -1.2
175,558 + PFLU_RS00765 0.46 -0.6
175,558 + PFLU_RS00765 0.46 -0.6
175,558 + PFLU_RS00765 0.46 -0.9
175,559 - PFLU_RS00765 0.46 -0.3
175,559 - PFLU_RS00765 0.46 -1.1
175,559 - PFLU_RS00765 0.46 -0.1
175,748 + PFLU_RS00765 0.69 +0.1
175,848 + PFLU_RS00765 0.81 +0.1
175,848 + PFLU_RS00765 0.81 -0.9
175,848 + PFLU_RS00765 0.81 -0.1
175,848 + PFLU_RS00765 0.81 +0.7
175,848 + PFLU_RS00765 0.81 +1.1
175,848 + PFLU_RS00765 0.81 +0.2
175,849 - PFLU_RS00765 0.81 -0.2
175,849 - PFLU_RS00765 0.81 -1.8
175,849 - PFLU_RS00765 0.81 +0.3
175,849 - PFLU_RS00765 0.81 +0.7
175,849 - PFLU_RS00765 0.81 -0.6
175,849 - PFLU_RS00765 0.81 -0.1
175,849 - PFLU_RS00765 0.81 +0.5
175,951 + -1.1
175,952 - +0.6
175,959 + -0.7
175,960 - -0.5
175,960 - -1.7
175,960 - +0.2
176,036 + +1.1
176,036 + +0.1
176,037 - -1.0
176,037 - +1.4
176,055 + -0.4
176,061 - +0.3
176,061 - +0.5
176,067 + -1.3
176,068 - +0.9
176,068 - -1.4
176,082 + -0.3
176,083 - -0.1
176,086 + +0.3
176,086 + +0.5
176,086 + +0.7
176,087 - +0.3
176,087 - +0.1
176,197 - -2.9
176,201 + +0.6
176,201 + +0.2
176,202 - -1.3
176,202 - +0.6
176,202 - +0.9
176,202 - +1.0
176,248 + +0.5
176,318 + -0.7
176,632 - PFLU_RS00770 0.33 +0.9
176,709 + PFLU_RS00770 0.49 +0.0
176,709 + PFLU_RS00770 0.49 -0.8
176,716 + PFLU_RS00770 0.50 -0.0
176,759 + PFLU_RS00770 0.59 -0.5
176,760 - PFLU_RS00770 0.59 -0.2
176,878 + PFLU_RS00770 0.83 +1.1
176,898 - PFLU_RS00770 0.88 -0.3
176,898 - PFLU_RS00770 0.88 +0.4
176,949 + +1.2
177,049 + PFLU_RS00775 0.14 +2.1
177,050 - PFLU_RS00775 0.15 +0.6
177,221 + PFLU_RS00775 0.53 +0.5
177,222 - PFLU_RS00775 0.53 -0.1
177,222 - PFLU_RS00775 0.53 +1.4
177,251 + PFLU_RS00775 0.59 +1.2
177,252 - PFLU_RS00775 0.60 -2.2
177,584 + -0.2
177,584 + +0.7
177,635 + PFLU_RS00780 0.13 -1.3
177,660 + PFLU_RS00780 0.18 -1.0
177,675 + PFLU_RS00780 0.22 -0.6
177,675 + PFLU_RS00780 0.22 -0.2
177,676 - PFLU_RS00780 0.22 -0.3
177,725 + PFLU_RS00780 0.33 -0.4
177,726 - PFLU_RS00780 0.33 +0.6
177,777 - PFLU_RS00780 0.44 +0.1
177,800 + PFLU_RS00780 0.49 -0.6
177,841 + PFLU_RS00780 0.58 +1.1
177,841 + PFLU_RS00780 0.58 +1.8
177,841 + PFLU_RS00780 0.58 +1.3
177,841 + PFLU_RS00780 0.58 -0.2
177,841 + PFLU_RS00780 0.58 +0.4
177,841 + PFLU_RS00780 0.58 -0.4
177,841 + PFLU_RS00780 0.58 -1.8
177,841 + PFLU_RS00780 0.58 +0.5
177,841 + PFLU_RS00780 0.58 +0.1
177,842 - PFLU_RS00780 0.59 -1.9
177,842 - PFLU_RS00780 0.59 +0.6
177,842 - PFLU_RS00780 0.59 +1.1
177,842 - PFLU_RS00780 0.59 -1.1
177,842 - PFLU_RS00780 0.59 -0.4
177,842 - PFLU_RS00780 0.59 +1.4
177,845 + PFLU_RS00780 0.59 +1.3
177,845 + PFLU_RS00780 0.59 +1.2
177,845 + PFLU_RS00780 0.59 -1.2
177,845 + PFLU_RS00780 0.59 +1.1
177,845 + PFLU_RS00780 0.59 +1.4
177,845 + PFLU_RS00780 0.59 +0.4
177,845 + PFLU_RS00780 0.59 +0.9
177,845 + PFLU_RS00780 0.59 -0.3
177,845 + PFLU_RS00780 0.59 +1.9
177,845 + PFLU_RS00780 0.59 +1.3
177,845 + PFLU_RS00780 0.59 +0.8
177,845 + PFLU_RS00780 0.59 +0.4
177,845 + PFLU_RS00780 0.59 -0.0
177,846 - PFLU_RS00780 0.60 -1.1
177,846 - PFLU_RS00780 0.60 -0.8
177,846 - PFLU_RS00780 0.60 -0.4
177,846 - PFLU_RS00780 0.60 -0.5
177,846 - PFLU_RS00780 0.60 -0.2
177,846 - PFLU_RS00780 0.60 +1.4
177,846 - PFLU_RS00780 0.60 +0.4
177,846 - PFLU_RS00780 0.60 +0.1
177,846 - PFLU_RS00780 0.60 -2.0
177,846 - PFLU_RS00780 0.60 -0.1
177,846 - PFLU_RS00780 0.60 +1.2
177,878 + PFLU_RS00780 0.67 -0.3
177,879 - PFLU_RS00780 0.67 +0.6

Or see this region's nucleotide sequence