Strain Fitness in Pseudomonas sp. S08-1 around OH686_23840

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23835 and OH686_23840 are separated by 3 nucleotidesOH686_23840 and OH686_23845 are separated by 227 nucleotides OH686_23835: OH686_23835 - sulfur acquisition oxidoreductase, SfnB family, at 4,828,187 to 4,829,386 _23835 OH686_23840: OH686_23840 - sulfur acquisition oxidoreductase, SfnB family, at 4,829,390 to 4,830,658 _23840 OH686_23845: OH686_23845 - Uncharacterized MFS-type transporter, at 4,830,886 to 4,832,112 _23845 Position (kb) 4829 4830 4831Strain fitness (log2 ratio) -2 -1 0 1 2at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.561 kb on + strand, within OH686_23835at 4828.562 kb on - strand, within OH686_23835at 4828.562 kb on - strand, within OH686_23835at 4828.562 kb on - strand, within OH686_23835at 4828.562 kb on - strand, within OH686_23835at 4828.562 kb on - strand, within OH686_23835at 4828.565 kb on + strand, within OH686_23835at 4828.565 kb on + strand, within OH686_23835at 4828.566 kb on - strand, within OH686_23835at 4828.566 kb on - strand, within OH686_23835at 4828.566 kb on - strand, within OH686_23835at 4828.566 kb on - strand, within OH686_23835at 4828.624 kb on - strand, within OH686_23835at 4828.624 kb on - strand, within OH686_23835at 4828.742 kb on + strand, within OH686_23835at 4828.742 kb on + strand, within OH686_23835at 4828.742 kb on + strand, within OH686_23835at 4828.742 kb on + strand, within OH686_23835at 4828.743 kb on - strand, within OH686_23835at 4828.914 kb on + strand, within OH686_23835at 4828.914 kb on + strand, within OH686_23835at 4828.914 kb on + strand, within OH686_23835at 4828.914 kb on + strand, within OH686_23835at 4828.915 kb on - strand, within OH686_23835at 4828.977 kb on - strand, within OH686_23835at 4829.043 kb on + strand, within OH686_23835at 4829.043 kb on + strand, within OH686_23835at 4829.043 kb on + strand, within OH686_23835at 4829.044 kb on - strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.097 kb on + strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.098 kb on - strand, within OH686_23835at 4829.208 kb on - strand, within OH686_23835at 4829.452 kb on - strandat 4829.452 kb on - strandat 4829.452 kb on - strandat 4829.452 kb on - strandat 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.748 kb on + strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.749 kb on - strand, within OH686_23840at 4829.794 kb on + strand, within OH686_23840at 4829.795 kb on - strand, within OH686_23840at 4830.120 kb on + strand, within OH686_23840at 4830.120 kb on + strand, within OH686_23840at 4830.120 kb on + strand, within OH686_23840at 4830.121 kb on - strand, within OH686_23840at 4830.121 kb on - strand, within OH686_23840at 4830.121 kb on - strand, within OH686_23840at 4830.121 kb on - strand, within OH686_23840at 4830.362 kb on + strand, within OH686_23840at 4830.362 kb on + strand, within OH686_23840at 4830.362 kb on + strand, within OH686_23840at 4830.362 kb on + strand, within OH686_23840at 4830.362 kb on + strand, within OH686_23840at 4830.362 kb on + strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.363 kb on - strand, within OH686_23840at 4830.644 kb on - strandat 4830.758 kb on - strandat 4830.802 kb on - strandat 4830.847 kb on + strandat 4830.847 kb on + strandat 4830.848 kb on - strandat 4830.848 kb on - strandat 4830.848 kb on - strandat 4830.907 kb on + strandat 4831.000 kb on + strandat 4831.000 kb on + strandat 4831.000 kb on + strandat 4831.000 kb on + strandat 4831.001 kb on - strandat 4831.001 kb on - strandat 4831.001 kb on - strandat 4831.001 kb on - strandat 4831.001 kb on - strandat 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.033 kb on + strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.034 kb on - strand, within OH686_23845at 4831.204 kb on + strand, within OH686_23845at 4831.204 kb on + strand, within OH686_23845at 4831.204 kb on + strand, within OH686_23845at 4831.205 kb on - strand, within OH686_23845at 4831.205 kb on - strand, within OH686_23845at 4831.205 kb on - strand, within OH686_23845at 4831.205 kb on - strand, within OH686_23845at 4831.222 kb on + strand, within OH686_23845at 4831.222 kb on + strand, within OH686_23845at 4831.372 kb on + strand, within OH686_23845at 4831.372 kb on + strand, within OH686_23845at 4831.372 kb on + strand, within OH686_23845at 4831.372 kb on + strand, within OH686_23845at 4831.373 kb on - strand, within OH686_23845at 4831.373 kb on - strand, within OH686_23845at 4831.373 kb on - strand, within OH686_23845at 4831.399 kb on + strand, within OH686_23845at 4831.399 kb on + strand, within OH686_23845at 4831.399 kb on + strand, within OH686_23845at 4831.399 kb on + strand, within OH686_23845at 4831.399 kb on + strand, within OH686_23845at 4831.400 kb on - strand, within OH686_23845at 4831.400 kb on - strand, within OH686_23845at 4831.400 kb on - strand, within OH686_23845at 4831.400 kb on - strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.615 kb on + strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845at 4831.616 kb on - strand, within OH686_23845

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,828,561 + OH686_23835 0.31 +0.2
4,828,561 + OH686_23835 0.31 -0.0
4,828,561 + OH686_23835 0.31 +0.2
4,828,561 + OH686_23835 0.31 +0.4
4,828,561 + OH686_23835 0.31 +0.3
4,828,561 + OH686_23835 0.31 +1.1
4,828,561 + OH686_23835 0.31 +1.2
4,828,561 + OH686_23835 0.31 +0.0
4,828,561 + OH686_23835 0.31 +0.3
4,828,562 - OH686_23835 0.31 -0.0
4,828,562 - OH686_23835 0.31 -0.4
4,828,562 - OH686_23835 0.31 -0.8
4,828,562 - OH686_23835 0.31 +0.1
4,828,562 - OH686_23835 0.31 -0.4
4,828,565 + OH686_23835 0.32 +1.0
4,828,565 + OH686_23835 0.32 -0.1
4,828,566 - OH686_23835 0.32 -0.3
4,828,566 - OH686_23835 0.32 +0.9
4,828,566 - OH686_23835 0.32 -0.4
4,828,566 - OH686_23835 0.32 -0.7
4,828,624 - OH686_23835 0.36 +0.6
4,828,624 - OH686_23835 0.36 -0.3
4,828,742 + OH686_23835 0.46 +0.3
4,828,742 + OH686_23835 0.46 +0.2
4,828,742 + OH686_23835 0.46 -0.4
4,828,742 + OH686_23835 0.46 +1.5
4,828,743 - OH686_23835 0.46 -0.7
4,828,914 + OH686_23835 0.61 -0.4
4,828,914 + OH686_23835 0.61 +0.1
4,828,914 + OH686_23835 0.61 -1.3
4,828,914 + OH686_23835 0.61 +1.3
4,828,915 - OH686_23835 0.61 +0.5
4,828,977 - OH686_23835 0.66 -0.6
4,829,043 + OH686_23835 0.71 +1.3
4,829,043 + OH686_23835 0.71 +0.0
4,829,043 + OH686_23835 0.71 +0.8
4,829,044 - OH686_23835 0.71 +0.4
4,829,097 + OH686_23835 0.76 -0.1
4,829,097 + OH686_23835 0.76 +0.2
4,829,097 + OH686_23835 0.76 -0.6
4,829,097 + OH686_23835 0.76 +0.3
4,829,097 + OH686_23835 0.76 -0.3
4,829,097 + OH686_23835 0.76 +0.3
4,829,097 + OH686_23835 0.76 -0.6
4,829,097 + OH686_23835 0.76 +0.5
4,829,098 - OH686_23835 0.76 -0.5
4,829,098 - OH686_23835 0.76 +0.3
4,829,098 - OH686_23835 0.76 +1.2
4,829,098 - OH686_23835 0.76 -0.0
4,829,098 - OH686_23835 0.76 -0.8
4,829,098 - OH686_23835 0.76 -0.2
4,829,098 - OH686_23835 0.76 +1.2
4,829,208 - OH686_23835 0.85 -0.8
4,829,452 - +0.0
4,829,452 - -0.0
4,829,452 - +0.4
4,829,452 - -0.0
4,829,748 + OH686_23840 0.28 -0.0
4,829,748 + OH686_23840 0.28 -0.3
4,829,748 + OH686_23840 0.28 -0.9
4,829,748 + OH686_23840 0.28 +0.7
4,829,748 + OH686_23840 0.28 +0.2
4,829,748 + OH686_23840 0.28 -0.3
4,829,748 + OH686_23840 0.28 +0.3
4,829,748 + OH686_23840 0.28 -0.5
4,829,748 + OH686_23840 0.28 +0.1
4,829,748 + OH686_23840 0.28 -0.1
4,829,748 + OH686_23840 0.28 +0.2
4,829,748 + OH686_23840 0.28 -1.2
4,829,749 - OH686_23840 0.28 +0.2
4,829,749 - OH686_23840 0.28 -0.2
4,829,749 - OH686_23840 0.28 -0.7
4,829,749 - OH686_23840 0.28 +0.5
4,829,749 - OH686_23840 0.28 +0.2
4,829,749 - OH686_23840 0.28 -0.1
4,829,749 - OH686_23840 0.28 -0.0
4,829,749 - OH686_23840 0.28 -0.6
4,829,749 - OH686_23840 0.28 +0.6
4,829,749 - OH686_23840 0.28 -1.0
4,829,749 - OH686_23840 0.28 -0.1
4,829,749 - OH686_23840 0.28 +0.7
4,829,749 - OH686_23840 0.28 -0.5
4,829,749 - OH686_23840 0.28 -0.5
4,829,794 + OH686_23840 0.32 +0.4
4,829,795 - OH686_23840 0.32 -0.6
4,830,120 + OH686_23840 0.58 -1.1
4,830,120 + OH686_23840 0.58 +0.2
4,830,120 + OH686_23840 0.58 -0.9
4,830,121 - OH686_23840 0.58 -0.8
4,830,121 - OH686_23840 0.58 -1.2
4,830,121 - OH686_23840 0.58 +0.4
4,830,121 - OH686_23840 0.58 -0.6
4,830,362 + OH686_23840 0.77 -1.8
4,830,362 + OH686_23840 0.77 -0.0
4,830,362 + OH686_23840 0.77 -1.2
4,830,362 + OH686_23840 0.77 -0.8
4,830,362 + OH686_23840 0.77 -0.0
4,830,362 + OH686_23840 0.77 -0.9
4,830,363 - OH686_23840 0.77 +0.1
4,830,363 - OH686_23840 0.77 -0.2
4,830,363 - OH686_23840 0.77 -0.7
4,830,363 - OH686_23840 0.77 -0.6
4,830,363 - OH686_23840 0.77 -1.0
4,830,363 - OH686_23840 0.77 +0.1
4,830,363 - OH686_23840 0.77 +0.2
4,830,644 - -0.3
4,830,758 - -0.0
4,830,802 - -0.5
4,830,847 + -0.0
4,830,847 + -0.2
4,830,848 - -1.4
4,830,848 - -0.6
4,830,848 - -0.2
4,830,907 + +0.6
4,831,000 + -0.1
4,831,000 + -0.5
4,831,000 + -0.3
4,831,000 + +0.7
4,831,001 - -0.1
4,831,001 - +1.9
4,831,001 - +0.4
4,831,001 - -1.1
4,831,001 - +0.5
4,831,033 + OH686_23845 0.12 -0.2
4,831,033 + OH686_23845 0.12 -0.6
4,831,033 + OH686_23845 0.12 +0.2
4,831,033 + OH686_23845 0.12 +0.6
4,831,033 + OH686_23845 0.12 -0.4
4,831,033 + OH686_23845 0.12 -0.7
4,831,033 + OH686_23845 0.12 -1.4
4,831,033 + OH686_23845 0.12 -1.1
4,831,033 + OH686_23845 0.12 +0.9
4,831,033 + OH686_23845 0.12 -0.5
4,831,033 + OH686_23845 0.12 +0.7
4,831,034 - OH686_23845 0.12 -1.1
4,831,034 - OH686_23845 0.12 -0.7
4,831,034 - OH686_23845 0.12 +0.8
4,831,034 - OH686_23845 0.12 +0.0
4,831,034 - OH686_23845 0.12 +0.3
4,831,034 - OH686_23845 0.12 +0.4
4,831,034 - OH686_23845 0.12 +0.1
4,831,034 - OH686_23845 0.12 +0.0
4,831,034 - OH686_23845 0.12 -0.5
4,831,034 - OH686_23845 0.12 -0.0
4,831,034 - OH686_23845 0.12 -0.4
4,831,204 + OH686_23845 0.26 +1.4
4,831,204 + OH686_23845 0.26 +0.5
4,831,204 + OH686_23845 0.26 -0.7
4,831,205 - OH686_23845 0.26 +0.6
4,831,205 - OH686_23845 0.26 -0.5
4,831,205 - OH686_23845 0.26 -0.3
4,831,205 - OH686_23845 0.26 -1.7
4,831,222 + OH686_23845 0.27 -0.0
4,831,222 + OH686_23845 0.27 +0.3
4,831,372 + OH686_23845 0.40 +2.5
4,831,372 + OH686_23845 0.40 -0.4
4,831,372 + OH686_23845 0.40 +0.3
4,831,372 + OH686_23845 0.40 -0.6
4,831,373 - OH686_23845 0.40 -0.2
4,831,373 - OH686_23845 0.40 +0.6
4,831,373 - OH686_23845 0.40 +0.6
4,831,399 + OH686_23845 0.42 -0.2
4,831,399 + OH686_23845 0.42 -0.4
4,831,399 + OH686_23845 0.42 +0.4
4,831,399 + OH686_23845 0.42 +0.1
4,831,399 + OH686_23845 0.42 -1.2
4,831,400 - OH686_23845 0.42 +0.2
4,831,400 - OH686_23845 0.42 -1.2
4,831,400 - OH686_23845 0.42 -0.1
4,831,400 - OH686_23845 0.42 +0.1
4,831,615 + OH686_23845 0.59 -1.4
4,831,615 + OH686_23845 0.59 +0.7
4,831,615 + OH686_23845 0.59 -0.4
4,831,615 + OH686_23845 0.59 -1.5
4,831,615 + OH686_23845 0.59 +0.3
4,831,615 + OH686_23845 0.59 -1.2
4,831,615 + OH686_23845 0.59 +0.6
4,831,615 + OH686_23845 0.59 +0.1
4,831,615 + OH686_23845 0.59 +0.3
4,831,615 + OH686_23845 0.59 -0.6
4,831,616 - OH686_23845 0.59 -1.0
4,831,616 - OH686_23845 0.59 -0.1
4,831,616 - OH686_23845 0.59 -0.8
4,831,616 - OH686_23845 0.59 +0.1
4,831,616 - OH686_23845 0.59 -0.1
4,831,616 - OH686_23845 0.59 -1.4
4,831,616 - OH686_23845 0.59 -0.6
4,831,616 - OH686_23845 0.59 +0.2
4,831,616 - OH686_23845 0.59 -1.1
4,831,616 - OH686_23845 0.59 -0.5
4,831,616 - OH686_23845 0.59 -0.3
4,831,616 - OH686_23845 0.59 +0.1
4,831,616 - OH686_23845 0.59 +0.9

Or see this region's nucleotide sequence