Strain Fitness in Pseudomonas sp. S08-1 around OH686_23470

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23460 and OH686_23465 are separated by 211 nucleotidesOH686_23465 and OH686_23470 are separated by 109 nucleotidesOH686_23470 and OH686_23475 are separated by 216 nucleotides OH686_23460: OH686_23460 - Poly(3-hydroxyalkanoate) depolymerase, at 4,754,088 to 4,754,849 _23460 OH686_23465: OH686_23465 - Transcriptional regulator, HxlR family, at 4,755,061 to 4,755,552 _23465 OH686_23470: OH686_23470 - beta-ketoacyl-acyl-carrier-protein synthase II, at 4,755,662 to 4,756,930 _23470 OH686_23475: OH686_23475 - hypothetical protein, at 4,757,147 to 4,757,470 _23475 Position (kb) 4755 4756 4757Strain fitness (log2 ratio) -2 -1 0 1 2at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.708 kb on + strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.709 kb on - strand, within OH686_23460at 4754.710 kb on + strand, within OH686_23460at 4754.711 kb on - strand, within OH686_23460at 4754.865 kb on + strandat 4754.866 kb on - strandat 4754.876 kb on + strandat 4754.877 kb on - strandat 4754.987 kb on + strandat 4754.987 kb on + strandat 4754.988 kb on - strandat 4754.988 kb on - strandat 4755.062 kb on + strandat 4755.062 kb on + strandat 4755.062 kb on + strandat 4755.062 kb on + strandat 4755.062 kb on + strandat 4755.062 kb on + strandat 4755.063 kb on - strandat 4755.063 kb on - strandat 4755.063 kb on - strandat 4755.063 kb on - strandat 4755.114 kb on + strand, within OH686_23465at 4755.114 kb on + strand, within OH686_23465at 4755.115 kb on - strand, within OH686_23465at 4755.115 kb on - strand, within OH686_23465at 4755.115 kb on - strand, within OH686_23465at 4755.242 kb on + strand, within OH686_23465at 4755.242 kb on + strand, within OH686_23465at 4755.242 kb on + strand, within OH686_23465at 4755.243 kb on - strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.314 kb on + strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.315 kb on - strand, within OH686_23465at 4755.341 kb on + strand, within OH686_23465at 4755.341 kb on + strand, within OH686_23465at 4755.341 kb on + strand, within OH686_23465at 4755.341 kb on + strand, within OH686_23465at 4755.341 kb on + strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.342 kb on - strand, within OH686_23465at 4755.507 kb on + strandat 4755.621 kb on + strandat 4755.621 kb on + strandat 4755.621 kb on + strandat 4755.622 kb on - strandat 4755.622 kb on - strandat 4755.622 kb on - strandat 4755.622 kb on - strandat 4755.622 kb on - strandat 4755.622 kb on - strandat 4755.622 kb on - strandat 4755.729 kb on + strandat 4755.729 kb on + strandat 4755.729 kb on + strandat 4755.730 kb on - strandat 4755.730 kb on - strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.786 kb on + strandat 4755.787 kb on - strandat 4755.787 kb on - strandat 4755.787 kb on - strandat 4755.787 kb on - strandat 4755.787 kb on - strandat 4755.787 kb on - strandat 4756.322 kb on + strand, within OH686_23470at 4756.322 kb on + strand, within OH686_23470at 4756.322 kb on + strand, within OH686_23470at 4756.322 kb on + strand, within OH686_23470at 4756.322 kb on + strand, within OH686_23470at 4756.323 kb on - strand, within OH686_23470at 4756.323 kb on - strand, within OH686_23470at 4756.323 kb on - strand, within OH686_23470at 4756.323 kb on - strand, within OH686_23470at 4756.323 kb on - strand, within OH686_23470at 4756.490 kb on + strand, within OH686_23470at 4756.490 kb on + strand, within OH686_23470at 4756.581 kb on + strand, within OH686_23470at 4756.581 kb on + strand, within OH686_23470at 4756.581 kb on + strand, within OH686_23470at 4756.582 kb on - strand, within OH686_23470at 4756.582 kb on - strand, within OH686_23470at 4756.582 kb on - strand, within OH686_23470at 4756.582 kb on - strand, within OH686_23470at 4756.582 kb on - strand, within OH686_23470at 4756.849 kb on + strandat 4756.849 kb on + strandat 4756.849 kb on + strandat 4756.849 kb on + strandat 4756.849 kb on + strandat 4756.849 kb on + strandat 4756.849 kb on + strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.850 kb on - strandat 4756.938 kb on + strandat 4756.939 kb on - strandat 4756.939 kb on - strandat 4756.939 kb on - strandat 4756.953 kb on + strandat 4756.954 kb on - strandat 4756.954 kb on - strandat 4756.983 kb on + strandat 4756.984 kb on - strandat 4756.984 kb on - strandat 4757.006 kb on + strandat 4757.006 kb on + strandat 4757.007 kb on - strandat 4757.007 kb on - strandat 4757.007 kb on - strandat 4757.007 kb on - strandat 4757.072 kb on - strandat 4757.123 kb on - strandat 4757.123 kb on - strandat 4757.148 kb on + strandat 4757.148 kb on + strandat 4757.189 kb on + strand, within OH686_23475at 4757.189 kb on + strand, within OH686_23475at 4757.189 kb on + strand, within OH686_23475at 4757.190 kb on - strand, within OH686_23475at 4757.190 kb on - strand, within OH686_23475at 4757.190 kb on - strand, within OH686_23475at 4757.234 kb on + strand, within OH686_23475at 4757.239 kb on + strand, within OH686_23475at 4757.239 kb on + strand, within OH686_23475at 4757.239 kb on + strand, within OH686_23475at 4757.239 kb on + strand, within OH686_23475at 4757.240 kb on - strand, within OH686_23475at 4757.240 kb on - strand, within OH686_23475at 4757.240 kb on - strand, within OH686_23475at 4757.240 kb on - strand, within OH686_23475at 4757.240 kb on - strand, within OH686_23475at 4757.240 kb on - strand, within OH686_23475at 4757.327 kb on - strand, within OH686_23475at 4757.327 kb on - strand, within OH686_23475at 4757.340 kb on - strand, within OH686_23475at 4757.344 kb on + strand, within OH686_23475at 4757.399 kb on + strand, within OH686_23475at 4757.399 kb on + strand, within OH686_23475at 4757.400 kb on - strand, within OH686_23475at 4757.400 kb on - strand, within OH686_23475at 4757.400 kb on - strand, within OH686_23475at 4757.400 kb on - strand, within OH686_23475at 4757.472 kb on + strandat 4757.472 kb on + strandat 4757.472 kb on + strandat 4757.472 kb on + strandat 4757.472 kb on + strandat 4757.472 kb on + strandat 4757.472 kb on + strandat 4757.473 kb on - strandat 4757.473 kb on - strandat 4757.473 kb on - strandat 4757.473 kb on - strandat 4757.526 kb on - strandat 4757.590 kb on + strandat 4757.590 kb on + strandat 4757.590 kb on + strandat 4757.590 kb on + strandat 4757.591 kb on - strandat 4757.591 kb on - strandat 4757.603 kb on + strandat 4757.603 kb on + strandat 4757.603 kb on + strandat 4757.603 kb on + strandat 4757.603 kb on + strandat 4757.604 kb on - strandat 4757.648 kb on + strandat 4757.648 kb on + strandat 4757.707 kb on + strandat 4757.707 kb on + strandat 4757.723 kb on + strandat 4757.723 kb on + strandat 4757.723 kb on + strandat 4757.724 kb on - strandat 4757.724 kb on - strandat 4757.858 kb on + strandat 4757.859 kb on - strandat 4757.859 kb on - strandat 4757.859 kb on - strandat 4757.926 kb on + strandat 4757.926 kb on + strandat 4757.926 kb on + strandat 4757.926 kb on + strandat 4757.926 kb on + strandat 4757.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,754,708 + OH686_23460 0.81 +1.2
4,754,708 + OH686_23460 0.81 -0.0
4,754,708 + OH686_23460 0.81 -0.8
4,754,708 + OH686_23460 0.81 -0.1
4,754,708 + OH686_23460 0.81 +0.0
4,754,708 + OH686_23460 0.81 -0.2
4,754,708 + OH686_23460 0.81 -0.3
4,754,708 + OH686_23460 0.81 +0.2
4,754,708 + OH686_23460 0.81 -0.1
4,754,708 + OH686_23460 0.81 -0.5
4,754,708 + OH686_23460 0.81 -0.9
4,754,708 + OH686_23460 0.81 -0.5
4,754,708 + OH686_23460 0.81 +0.4
4,754,709 - OH686_23460 0.81 +0.7
4,754,709 - OH686_23460 0.81 -0.4
4,754,709 - OH686_23460 0.81 +0.3
4,754,709 - OH686_23460 0.81 +0.3
4,754,709 - OH686_23460 0.81 +0.3
4,754,709 - OH686_23460 0.81 +0.7
4,754,709 - OH686_23460 0.81 +0.2
4,754,709 - OH686_23460 0.81 +0.2
4,754,709 - OH686_23460 0.81 -0.5
4,754,710 + OH686_23460 0.82 -1.2
4,754,711 - OH686_23460 0.82 +0.5
4,754,865 + +0.6
4,754,866 - -0.3
4,754,876 + -0.4
4,754,877 - +0.3
4,754,987 + +1.2
4,754,987 + +0.1
4,754,988 - +0.8
4,754,988 - -0.3
4,755,062 + +1.0
4,755,062 + +0.2
4,755,062 + +0.2
4,755,062 + +0.8
4,755,062 + +0.4
4,755,062 + -0.8
4,755,063 - -0.1
4,755,063 - -0.6
4,755,063 - +0.3
4,755,063 - -1.3
4,755,114 + OH686_23465 0.11 +0.3
4,755,114 + OH686_23465 0.11 -0.1
4,755,115 - OH686_23465 0.11 +0.5
4,755,115 - OH686_23465 0.11 +1.7
4,755,115 - OH686_23465 0.11 +0.3
4,755,242 + OH686_23465 0.37 +0.5
4,755,242 + OH686_23465 0.37 +0.2
4,755,242 + OH686_23465 0.37 +0.3
4,755,243 - OH686_23465 0.37 -1.5
4,755,314 + OH686_23465 0.51 +0.1
4,755,314 + OH686_23465 0.51 +0.2
4,755,314 + OH686_23465 0.51 +1.0
4,755,314 + OH686_23465 0.51 -0.8
4,755,314 + OH686_23465 0.51 -0.7
4,755,314 + OH686_23465 0.51 +0.1
4,755,314 + OH686_23465 0.51 +0.5
4,755,314 + OH686_23465 0.51 -0.1
4,755,314 + OH686_23465 0.51 +0.3
4,755,314 + OH686_23465 0.51 -0.1
4,755,314 + OH686_23465 0.51 -0.3
4,755,314 + OH686_23465 0.51 -0.1
4,755,314 + OH686_23465 0.51 +0.6
4,755,314 + OH686_23465 0.51 +0.2
4,755,314 + OH686_23465 0.51 +0.3
4,755,314 + OH686_23465 0.51 +0.0
4,755,314 + OH686_23465 0.51 -0.1
4,755,314 + OH686_23465 0.51 +0.7
4,755,315 - OH686_23465 0.52 +1.0
4,755,315 - OH686_23465 0.52 -0.9
4,755,315 - OH686_23465 0.52 +0.5
4,755,315 - OH686_23465 0.52 -0.2
4,755,315 - OH686_23465 0.52 +0.6
4,755,315 - OH686_23465 0.52 -1.4
4,755,315 - OH686_23465 0.52 +0.1
4,755,315 - OH686_23465 0.52 +0.5
4,755,315 - OH686_23465 0.52 -1.3
4,755,315 - OH686_23465 0.52 +0.3
4,755,341 + OH686_23465 0.57 -0.5
4,755,341 + OH686_23465 0.57 -0.4
4,755,341 + OH686_23465 0.57 +0.6
4,755,341 + OH686_23465 0.57 +0.3
4,755,341 + OH686_23465 0.57 -0.3
4,755,342 - OH686_23465 0.57 -0.3
4,755,342 - OH686_23465 0.57 -0.3
4,755,342 - OH686_23465 0.57 +0.4
4,755,342 - OH686_23465 0.57 -0.0
4,755,342 - OH686_23465 0.57 -0.3
4,755,342 - OH686_23465 0.57 +0.3
4,755,342 - OH686_23465 0.57 -0.4
4,755,507 + -0.0
4,755,621 + +1.1
4,755,621 + +0.3
4,755,621 + -0.2
4,755,622 - -0.2
4,755,622 - +0.6
4,755,622 - -0.2
4,755,622 - +0.1
4,755,622 - +1.0
4,755,622 - +0.4
4,755,622 - -0.2
4,755,729 + -0.5
4,755,729 + +1.5
4,755,729 + -0.7
4,755,730 - -0.6
4,755,730 - +0.1
4,755,786 + -0.3
4,755,786 + +0.1
4,755,786 + -0.4
4,755,786 + +0.8
4,755,786 + -1.0
4,755,786 + +0.9
4,755,786 + -0.6
4,755,786 + +0.1
4,755,787 - -0.4
4,755,787 - +0.1
4,755,787 - +0.5
4,755,787 - -0.1
4,755,787 - +0.6
4,755,787 - +0.0
4,756,322 + OH686_23470 0.52 -0.7
4,756,322 + OH686_23470 0.52 -1.0
4,756,322 + OH686_23470 0.52 +0.0
4,756,322 + OH686_23470 0.52 -0.2
4,756,322 + OH686_23470 0.52 -1.5
4,756,323 - OH686_23470 0.52 +0.2
4,756,323 - OH686_23470 0.52 -0.2
4,756,323 - OH686_23470 0.52 -0.1
4,756,323 - OH686_23470 0.52 -0.6
4,756,323 - OH686_23470 0.52 +0.7
4,756,490 + OH686_23470 0.65 -0.6
4,756,490 + OH686_23470 0.65 -0.1
4,756,581 + OH686_23470 0.72 +0.9
4,756,581 + OH686_23470 0.72 -0.5
4,756,581 + OH686_23470 0.72 -0.7
4,756,582 - OH686_23470 0.72 +0.9
4,756,582 - OH686_23470 0.72 -0.7
4,756,582 - OH686_23470 0.72 -0.5
4,756,582 - OH686_23470 0.72 +1.5
4,756,582 - OH686_23470 0.72 -1.0
4,756,849 + -0.0
4,756,849 + +0.5
4,756,849 + -1.0
4,756,849 + +0.2
4,756,849 + -0.2
4,756,849 + -0.4
4,756,849 + +0.8
4,756,850 - +0.1
4,756,850 - -0.1
4,756,850 - -0.5
4,756,850 - -0.3
4,756,850 - -0.2
4,756,850 - -0.1
4,756,850 - -0.9
4,756,850 - -0.5
4,756,850 - +0.2
4,756,850 - +0.8
4,756,938 + -1.2
4,756,939 - +0.0
4,756,939 - +0.6
4,756,939 - +1.9
4,756,953 + -0.6
4,756,954 - +0.4
4,756,954 - +0.9
4,756,983 + +1.3
4,756,984 - -0.4
4,756,984 - -0.1
4,757,006 + -0.4
4,757,006 + +0.0
4,757,007 - -0.5
4,757,007 - +0.0
4,757,007 - +0.8
4,757,007 - +0.7
4,757,072 - +0.5
4,757,123 - -0.2
4,757,123 - -2.3
4,757,148 + +0.3
4,757,148 + +0.3
4,757,189 + OH686_23475 0.13 -0.3
4,757,189 + OH686_23475 0.13 +0.1
4,757,189 + OH686_23475 0.13 +0.1
4,757,190 - OH686_23475 0.13 +0.1
4,757,190 - OH686_23475 0.13 +0.6
4,757,190 - OH686_23475 0.13 -0.4
4,757,234 + OH686_23475 0.27 +1.2
4,757,239 + OH686_23475 0.28 +1.3
4,757,239 + OH686_23475 0.28 -0.1
4,757,239 + OH686_23475 0.28 -0.7
4,757,239 + OH686_23475 0.28 -0.9
4,757,240 - OH686_23475 0.29 +0.1
4,757,240 - OH686_23475 0.29 -2.2
4,757,240 - OH686_23475 0.29 +1.1
4,757,240 - OH686_23475 0.29 +0.2
4,757,240 - OH686_23475 0.29 -0.2
4,757,240 - OH686_23475 0.29 +0.0
4,757,327 - OH686_23475 0.56 -0.7
4,757,327 - OH686_23475 0.56 +1.0
4,757,340 - OH686_23475 0.60 +0.6
4,757,344 + OH686_23475 0.61 +0.1
4,757,399 + OH686_23475 0.78 -1.1
4,757,399 + OH686_23475 0.78 +0.1
4,757,400 - OH686_23475 0.78 -0.8
4,757,400 - OH686_23475 0.78 -0.2
4,757,400 - OH686_23475 0.78 +0.3
4,757,400 - OH686_23475 0.78 -0.3
4,757,472 + -1.4
4,757,472 + +0.1
4,757,472 + +0.2
4,757,472 + -0.1
4,757,472 + -0.1
4,757,472 + -0.6
4,757,472 + +0.2
4,757,473 - +0.6
4,757,473 - +0.3
4,757,473 - -0.3
4,757,473 - -0.2
4,757,526 - +0.2
4,757,590 + +1.5
4,757,590 + +2.1
4,757,590 + -0.6
4,757,590 + -0.1
4,757,591 - +0.2
4,757,591 - -0.4
4,757,603 + -0.2
4,757,603 + -0.5
4,757,603 + -0.2
4,757,603 + -1.1
4,757,603 + -1.4
4,757,604 - +0.3
4,757,648 + +0.9
4,757,648 + +0.1
4,757,707 + +0.2
4,757,707 + -0.2
4,757,723 + -0.8
4,757,723 + -0.2
4,757,723 + +1.3
4,757,724 - +0.4
4,757,724 - +0.5
4,757,858 + -0.4
4,757,859 - +0.4
4,757,859 - -0.4
4,757,859 - +1.2
4,757,926 + +0.3
4,757,926 + -0.4
4,757,926 + -0.4
4,757,926 + +0.8
4,757,926 + -0.7
4,757,930 + -0.2

Or see this region's nucleotide sequence