Strain Fitness in Pseudomonas sp. S08-1 around OH686_21320

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_21310 and OH686_21315 are separated by 11 nucleotidesOH686_21315 and OH686_21320 are separated by 29 nucleotidesOH686_21320 and OH686_21325 are separated by 155 nucleotides OH686_21310: OH686_21310 - succinylarginine dihydrolase, at 4,365,829 to 4,367,175 _21310 OH686_21315: OH686_21315 - Putative (G3E family), at 4,367,187 to 4,367,471 _21315 OH686_21320: OH686_21320 - succinylglutamate desuccinylase, at 4,367,501 to 4,368,493 _21320 OH686_21325: OH686_21325 - alanine--tRNA ligase, at 4,368,649 to 4,371,273 _21325 Position (kb) 4367 4368 4369Strain fitness (log2 ratio) -2 -1 0 1 2at 4366.534 kb on + strand, within OH686_21310at 4366.534 kb on + strand, within OH686_21310at 4366.534 kb on + strand, within OH686_21310at 4366.534 kb on + strand, within OH686_21310at 4366.535 kb on - strand, within OH686_21310at 4366.535 kb on - strand, within OH686_21310at 4366.535 kb on - strand, within OH686_21310at 4366.535 kb on - strand, within OH686_21310at 4366.618 kb on + strand, within OH686_21310at 4366.618 kb on + strand, within OH686_21310at 4366.618 kb on + strand, within OH686_21310at 4366.618 kb on + strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.619 kb on - strand, within OH686_21310at 4366.753 kb on + strand, within OH686_21310at 4366.753 kb on + strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.754 kb on - strand, within OH686_21310at 4366.846 kb on + strand, within OH686_21310at 4366.847 kb on - strand, within OH686_21310at 4367.050 kb on + strandat 4367.139 kb on + strandat 4367.140 kb on - strandat 4367.140 kb on - strandat 4367.140 kb on - strandat 4367.219 kb on + strand, within OH686_21315at 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on + strandat 4367.446 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.447 kb on - strandat 4367.481 kb on + strandat 4367.481 kb on + strandat 4367.482 kb on - strandat 4367.493 kb on + strandat 4367.493 kb on + strandat 4367.493 kb on + strandat 4368.592 kb on + strandat 4368.592 kb on + strandat 4368.593 kb on - strandat 4368.593 kb on - strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strandat 4368.594 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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4,366,534 + OH686_21310 0.52 +0.0
4,366,534 + OH686_21310 0.52 -0.7
4,366,534 + OH686_21310 0.52 -0.4
4,366,534 + OH686_21310 0.52 -0.4
4,366,535 - OH686_21310 0.52 -0.2
4,366,535 - OH686_21310 0.52 +0.7
4,366,535 - OH686_21310 0.52 +0.3
4,366,535 - OH686_21310 0.52 +1.2
4,366,618 + OH686_21310 0.59 +0.5
4,366,618 + OH686_21310 0.59 -1.3
4,366,618 + OH686_21310 0.59 +0.1
4,366,618 + OH686_21310 0.59 +0.0
4,366,619 - OH686_21310 0.59 -1.8
4,366,619 - OH686_21310 0.59 -1.4
4,366,619 - OH686_21310 0.59 -0.4
4,366,619 - OH686_21310 0.59 -0.3
4,366,619 - OH686_21310 0.59 +0.3
4,366,619 - OH686_21310 0.59 -0.1
4,366,619 - OH686_21310 0.59 -1.1
4,366,753 + OH686_21310 0.69 +1.4
4,366,753 + OH686_21310 0.69 -0.4
4,366,754 - OH686_21310 0.69 -0.2
4,366,754 - OH686_21310 0.69 -0.5
4,366,754 - OH686_21310 0.69 +0.1
4,366,754 - OH686_21310 0.69 +1.9
4,366,754 - OH686_21310 0.69 -0.1
4,366,754 - OH686_21310 0.69 -0.4
4,366,754 - OH686_21310 0.69 +1.6
4,366,846 + OH686_21310 0.76 -0.1
4,366,847 - OH686_21310 0.76 +0.0
4,367,050 + +0.5
4,367,139 + +0.2
4,367,140 - +0.3
4,367,140 - +0.0
4,367,140 - +0.1
4,367,219 + OH686_21315 0.11 +1.0
4,367,446 + -1.0
4,367,446 + -0.7
4,367,446 + +1.4
4,367,446 + -0.3
4,367,446 + -1.0
4,367,446 + -0.6
4,367,446 + +0.4
4,367,446 + -0.6
4,367,446 + +1.5
4,367,446 + +0.2
4,367,446 + +1.2
4,367,446 + -0.6
4,367,446 + +1.1
4,367,446 + +0.6
4,367,446 + +1.6
4,367,446 + -0.1
4,367,446 + -0.3
4,367,446 + +0.1
4,367,446 + +1.7
4,367,446 + -0.9
4,367,446 - -0.5
4,367,447 - +0.6
4,367,447 - +1.0
4,367,447 - +0.2
4,367,447 - -0.2
4,367,447 - +0.1
4,367,447 - +0.6
4,367,447 - -1.5
4,367,447 - -0.2
4,367,447 - -0.8
4,367,447 - -0.7
4,367,447 - +0.3
4,367,447 - +0.6
4,367,447 - -0.8
4,367,447 - +0.2
4,367,447 - -0.2
4,367,447 - +0.8
4,367,447 - -0.1
4,367,447 - +0.9
4,367,447 - -1.1
4,367,447 - +0.6
4,367,481 + -0.1
4,367,481 + +0.1
4,367,482 - +0.1
4,367,493 + +1.3
4,367,493 + +1.1
4,367,493 + -0.6
4,368,592 + -0.1
4,368,592 + -0.6
4,368,593 - +1.0
4,368,593 - +0.0
4,368,594 + -0.0
4,368,594 + -0.1
4,368,594 + -0.1
4,368,594 + +0.3
4,368,594 + -0.2
4,368,594 + +0.9
4,368,594 + -0.5
4,368,594 + -0.8
4,368,594 + -0.3

Or see this region's nucleotide sequence