Strain Fitness in Pseudomonas sp. S08-1 around OH686_08545

Experiment: Trisodium citrate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_08540 and OH686_08545 overlap by 102 nucleotidesOH686_08545 and OH686_08550 are separated by 40 nucleotidesOH686_08550 and OH686_08555 are separated by 13 nucleotidesOH686_08555 and OH686_08560 are separated by 14 nucleotides OH686_08540: OH686_08540 - RNA polymerase sigma-54 factor, at 1,735,411 to 1,736,913 _08540 OH686_08545: OH686_08545 - hypothetical protein' product='hypothetical protein, at 1,736,812 to 1,737,030 _08545 OH686_08550: OH686_08550 - Ribosome hibernation promoting factor Hpf, at 1,737,071 to 1,737,379 _08550 OH686_08555: OH686_08555 - PTS IIA-like nitrogen-regulatory protein PtsN, at 1,737,393 to 1,737,857 _08555 OH686_08560: OH686_08560 - RNase adapter protein RapZ, at 1,737,872 to 1,738,729 _08560 Position (kb) 1736 1737 1738Strain fitness (log2 ratio) -2 -1 0 1 2at 1736.879 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.911 kb on + strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.912 kb on - strandat 1736.946 kb on + strand, within OH686_08545at 1736.960 kb on + strand, within OH686_08545at 1736.960 kb on + strand, within OH686_08545at 1736.961 kb on - strand, within OH686_08545at 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.033 kb on + strandat 1737.034 kb on - strandat 1737.034 kb on - strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.045 kb on + strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.046 kb on - strandat 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.125 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.281 kb on + strand, within OH686_08550at 1737.282 kb on - strand, within OH686_08550at 1737.282 kb on - strand, within OH686_08550at 1737.282 kb on - strand, within OH686_08550at 1737.931 kb on - strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.950 kb on + strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strandat 1737.951 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
remove
1,736,879 + -0.1
1,736,911 + +0.2
1,736,911 + +0.1
1,736,911 + +0.5
1,736,911 + +0.0
1,736,911 + +0.3
1,736,912 - +0.2
1,736,912 - -0.1
1,736,912 - -1.1
1,736,912 - +0.5
1,736,912 - -0.2
1,736,912 - -0.9
1,736,912 - +1.9
1,736,946 + OH686_08545 0.61 -0.3
1,736,960 + OH686_08545 0.68 -1.4
1,736,960 + OH686_08545 0.68 +0.6
1,736,961 - OH686_08545 0.68 -1.1
1,737,033 + -0.4
1,737,033 + +0.3
1,737,033 + +0.1
1,737,033 + +1.3
1,737,033 + +0.4
1,737,033 + +0.5
1,737,033 + -0.7
1,737,033 + +0.2
1,737,033 + -1.2
1,737,034 - +0.1
1,737,034 - -0.2
1,737,045 + +0.2
1,737,045 + -0.6
1,737,045 + -0.5
1,737,045 + +0.3
1,737,045 + +0.3
1,737,046 - -0.3
1,737,046 - +0.1
1,737,046 - -1.9
1,737,046 - +1.2
1,737,046 - -0.4
1,737,125 + OH686_08550 0.17 -0.2
1,737,125 + OH686_08550 0.17 +0.9
1,737,125 + OH686_08550 0.17 +0.1
1,737,125 + OH686_08550 0.17 +0.0
1,737,125 + OH686_08550 0.17 +0.8
1,737,125 + OH686_08550 0.17 +0.8
1,737,281 + OH686_08550 0.68 -0.3
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.1
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.1
1,737,281 + OH686_08550 0.68 -0.3
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 +0.5
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 -0.8
1,737,281 + OH686_08550 0.68 +1.9
1,737,281 + OH686_08550 0.68 +1.5
1,737,281 + OH686_08550 0.68 +0.3
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.6
1,737,281 + OH686_08550 0.68 +0.6
1,737,281 + OH686_08550 0.68 -0.5
1,737,281 + OH686_08550 0.68 +0.0
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 -0.4
1,737,281 + OH686_08550 0.68 -0.2
1,737,281 + OH686_08550 0.68 -0.2
1,737,281 + OH686_08550 0.68 +0.4
1,737,281 + OH686_08550 0.68 -1.5
1,737,281 + OH686_08550 0.68 +0.6
1,737,281 + OH686_08550 0.68 -0.0
1,737,281 + OH686_08550 0.68 +0.2
1,737,281 + OH686_08550 0.68 -0.8
1,737,281 + OH686_08550 0.68 -0.9
1,737,281 + OH686_08550 0.68 -0.3
1,737,281 + OH686_08550 0.68 +1.1
1,737,282 - OH686_08550 0.68 -0.4
1,737,282 - OH686_08550 0.68 -0.4
1,737,282 - OH686_08550 0.68 -0.4
1,737,931 - +1.2
1,737,950 + +0.3
1,737,950 + -0.5
1,737,950 + -0.1
1,737,950 + -0.7
1,737,950 + +0.1
1,737,950 + -1.5
1,737,950 + -1.3
1,737,950 + -0.2
1,737,950 + -0.4
1,737,951 - +0.5
1,737,951 - -1.4
1,737,951 - -0.4
1,737,951 - +0.7
1,737,951 - +0.5
1,737,951 - -1.1

Or see this region's nucleotide sequence