Strain Fitness in Pseudomonas sp. S08-1 around OH686_03200

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03195 and OH686_03200 are separated by 125 nucleotidesOH686_03200 and OH686_03205 are separated by 118 nucleotides OH686_03195: OH686_03195 - hypothetical protein, at 668,539 to 669,981 _03195 OH686_03200: OH686_03200 - EpiH/GdmH-related protein, at 670,107 to 670,598 _03200 OH686_03205: OH686_03205 - Hydrolase, alpha/beta fold family, at 670,717 to 671,724 _03205 Position (kb) 670 671Strain fitness (log2 ratio) -2 -1 0 1 2at 669.245 kb on - strand, within OH686_03195at 669.608 kb on + strand, within OH686_03195at 669.992 kb on + strandat 669.992 kb on + strandat 669.992 kb on + strandat 670.209 kb on + strand, within OH686_03200at 670.209 kb on + strand, within OH686_03200at 670.209 kb on + strand, within OH686_03200at 670.209 kb on + strand, within OH686_03200at 670.209 kb on + strand, within OH686_03200at 670.209 kb on + strand, within OH686_03200at 670.209 kb on + strand, within OH686_03200at 670.210 kb on - strand, within OH686_03200at 670.275 kb on + strand, within OH686_03200at 670.275 kb on + strand, within OH686_03200at 670.275 kb on + strand, within OH686_03200at 670.276 kb on - strand, within OH686_03200at 670.505 kb on + strand, within OH686_03200at 670.505 kb on + strand, within OH686_03200at 670.505 kb on + strand, within OH686_03200at 670.505 kb on + strand, within OH686_03200at 670.506 kb on - strand, within OH686_03200at 670.506 kb on - strand, within OH686_03200at 670.527 kb on + strand, within OH686_03200at 670.528 kb on - strand, within OH686_03200at 670.542 kb on + strand, within OH686_03200at 670.542 kb on + strand, within OH686_03200at 670.562 kb on - strandat 670.562 kb on - strandat 670.596 kb on + strandat 670.596 kb on + strandat 670.596 kb on + strandat 670.596 kb on + strandat 670.596 kb on + strandat 670.596 kb on + strandat 670.596 kb on + strandat 670.597 kb on - strandat 670.614 kb on + strandat 670.614 kb on + strandat 670.614 kb on + strandat 670.614 kb on + strandat 670.615 kb on - strandat 670.615 kb on - strandat 670.615 kb on - strandat 670.672 kb on + strandat 670.672 kb on + strandat 670.728 kb on - strandat 670.728 kb on - strandat 670.795 kb on + strandat 670.796 kb on - strandat 670.796 kb on - strandat 670.796 kb on - strandat 670.822 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.882 kb on + strand, within OH686_03205at 670.883 kb on - strand, within OH686_03205at 670.883 kb on - strand, within OH686_03205at 670.883 kb on - strand, within OH686_03205at 670.883 kb on - strand, within OH686_03205at 670.883 kb on - strand, within OH686_03205at 671.089 kb on - strand, within OH686_03205at 671.089 kb on - strand, within OH686_03205at 671.207 kb on + strand, within OH686_03205at 671.207 kb on + strand, within OH686_03205at 671.207 kb on + strand, within OH686_03205at 671.257 kb on + strand, within OH686_03205at 671.320 kb on + strand, within OH686_03205at 671.320 kb on + strand, within OH686_03205at 671.321 kb on - strand, within OH686_03205at 671.321 kb on - strand, within OH686_03205at 671.321 kb on - strand, within OH686_03205at 671.321 kb on - strand, within OH686_03205at 671.335 kb on + strand, within OH686_03205at 671.335 kb on + strand, within OH686_03205at 671.335 kb on + strand, within OH686_03205at 671.335 kb on + strand, within OH686_03205at 671.335 kb on + strand, within OH686_03205at 671.335 kb on + strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.336 kb on - strand, within OH686_03205at 671.338 kb on + strand, within OH686_03205at 671.338 kb on + strand, within OH686_03205at 671.338 kb on + strand, within OH686_03205at 671.338 kb on + strand, within OH686_03205at 671.338 kb on + strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.339 kb on - strand, within OH686_03205at 671.362 kb on + strand, within OH686_03205at 671.362 kb on + strand, within OH686_03205at 671.363 kb on - strand, within OH686_03205at 671.396 kb on - strand, within OH686_03205at 671.584 kb on + strand, within OH686_03205at 671.584 kb on + strand, within OH686_03205at 671.584 kb on + strand, within OH686_03205at 671.584 kb on + strand, within OH686_03205

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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669,245 - OH686_03195 0.49 -0.1
669,608 + OH686_03195 0.74 -0.0
669,992 + -1.9
669,992 + -0.1
669,992 + -1.0
670,209 + OH686_03200 0.21 -0.9
670,209 + OH686_03200 0.21 +0.6
670,209 + OH686_03200 0.21 +1.2
670,209 + OH686_03200 0.21 -0.9
670,209 + OH686_03200 0.21 -0.4
670,209 + OH686_03200 0.21 +0.6
670,209 + OH686_03200 0.21 +0.5
670,210 - OH686_03200 0.21 +0.5
670,275 + OH686_03200 0.34 +0.4
670,275 + OH686_03200 0.34 +0.3
670,275 + OH686_03200 0.34 +1.0
670,276 - OH686_03200 0.34 -0.4
670,505 + OH686_03200 0.81 +0.3
670,505 + OH686_03200 0.81 +0.2
670,505 + OH686_03200 0.81 -0.6
670,505 + OH686_03200 0.81 +1.0
670,506 - OH686_03200 0.81 -0.9
670,506 - OH686_03200 0.81 -0.4
670,527 + OH686_03200 0.85 +0.1
670,528 - OH686_03200 0.86 -0.8
670,542 + OH686_03200 0.88 -0.2
670,542 + OH686_03200 0.88 -0.3
670,562 - -2.7
670,562 - +0.0
670,596 + -0.5
670,596 + +0.5
670,596 + -0.2
670,596 + -0.1
670,596 + -0.4
670,596 + +0.2
670,596 + -0.7
670,597 - +0.1
670,614 + -0.1
670,614 + +1.0
670,614 + -0.2
670,614 + -0.6
670,615 - -1.1
670,615 - +0.2
670,615 - +0.4
670,672 + -0.2
670,672 + -0.7
670,728 - +0.1
670,728 - +0.3
670,795 + +0.1
670,796 - +0.5
670,796 - -0.3
670,796 - +0.8
670,822 + OH686_03205 0.10 +0.1
670,882 + OH686_03205 0.16 -0.3
670,882 + OH686_03205 0.16 +0.3
670,882 + OH686_03205 0.16 +0.3
670,882 + OH686_03205 0.16 -0.1
670,882 + OH686_03205 0.16 +0.3
670,882 + OH686_03205 0.16 -0.5
670,882 + OH686_03205 0.16 -0.3
670,882 + OH686_03205 0.16 -0.2
670,882 + OH686_03205 0.16 +0.2
670,882 + OH686_03205 0.16 -0.6
670,883 - OH686_03205 0.16 -0.6
670,883 - OH686_03205 0.16 -0.8
670,883 - OH686_03205 0.16 -0.1
670,883 - OH686_03205 0.16 +0.9
670,883 - OH686_03205 0.16 +0.4
671,089 - OH686_03205 0.37 +1.5
671,089 - OH686_03205 0.37 +0.0
671,207 + OH686_03205 0.49 -0.0
671,207 + OH686_03205 0.49 +0.2
671,207 + OH686_03205 0.49 -0.6
671,257 + OH686_03205 0.54 +0.2
671,320 + OH686_03205 0.60 -0.2
671,320 + OH686_03205 0.60 -0.8
671,321 - OH686_03205 0.60 -0.0
671,321 - OH686_03205 0.60 +0.8
671,321 - OH686_03205 0.60 -1.3
671,321 - OH686_03205 0.60 +2.1
671,335 + OH686_03205 0.61 -0.7
671,335 + OH686_03205 0.61 +0.1
671,335 + OH686_03205 0.61 +0.2
671,335 + OH686_03205 0.61 -0.8
671,335 + OH686_03205 0.61 +1.1
671,335 + OH686_03205 0.61 -0.8
671,336 - OH686_03205 0.61 -0.2
671,336 - OH686_03205 0.61 -0.7
671,336 - OH686_03205 0.61 +0.6
671,336 - OH686_03205 0.61 -0.6
671,336 - OH686_03205 0.61 +0.5
671,336 - OH686_03205 0.61 -0.7
671,336 - OH686_03205 0.61 +0.6
671,336 - OH686_03205 0.61 +0.6
671,336 - OH686_03205 0.61 +0.2
671,336 - OH686_03205 0.61 -0.0
671,336 - OH686_03205 0.61 -0.0
671,338 + OH686_03205 0.62 -1.6
671,338 + OH686_03205 0.62 +0.2
671,338 + OH686_03205 0.62 +1.0
671,338 + OH686_03205 0.62 -0.7
671,338 + OH686_03205 0.62 +1.3
671,339 - OH686_03205 0.62 +0.9
671,339 - OH686_03205 0.62 -0.3
671,339 - OH686_03205 0.62 +0.5
671,339 - OH686_03205 0.62 +0.4
671,339 - OH686_03205 0.62 +0.1
671,339 - OH686_03205 0.62 -0.0
671,339 - OH686_03205 0.62 +0.3
671,339 - OH686_03205 0.62 -1.2
671,339 - OH686_03205 0.62 +0.9
671,362 + OH686_03205 0.64 +0.4
671,362 + OH686_03205 0.64 +0.9
671,363 - OH686_03205 0.64 -0.0
671,396 - OH686_03205 0.67 -0.8
671,584 + OH686_03205 0.86 -1.0
671,584 + OH686_03205 0.86 -0.5
671,584 + OH686_03205 0.86 -0.5
671,584 + OH686_03205 0.86 -0.1

Or see this region's nucleotide sequence