Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04045 and PS417_04050 overlap by 1 nucleotides PS417_04050 and PS417_04055 are separated by 10 nucleotides PS417_04055 and PS417_04060 are separated by 10 nucleotides
PS417_04045: PS417_04045 - peptide ABC transporter ATP-binding protein, at 907,238 to 908,209
_04045
PS417_04050: PS417_04050 - peptide ABC transporter ATP-binding protein, at 908,209 to 909,177
_04050
PS417_04055: PS417_04055 - peptide transporter, at 909,188 to 910,099
_04055
PS417_04060: PS417_04060 - dipeptide ABC transporter, permease component <small>(from data)</small>, at 910,110 to 911,120
_04060
Position (kb) 908
909
910 Strain fitness (log2 ratio) -1
0
1 at 907.590 kb on + strand at 908.072 kb on + strand, within PS417_04045 at 908.170 kb on - strand at 908.306 kb on + strand, within PS417_04050 at 908.306 kb on + strand, within PS417_04050 at 908.709 kb on + strand, within PS417_04050 at 909.315 kb on + strand, within PS417_04055 at 909.365 kb on + strand, within PS417_04055 at 909.522 kb on + strand, within PS417_04055 at 909.523 kb on - strand, within PS417_04055 at 909.570 kb on + strand, within PS417_04055 at 909.570 kb on + strand, within PS417_04055 at 909.916 kb on - strand, within PS417_04055 at 909.932 kb on - strand, within PS417_04055
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 907,590 + -0.3 908,072 + PS417_04045 0.86 +0.9 908,170 - +0.1 908,306 + PS417_04050 0.10 -0.4 908,306 + PS417_04050 0.10 -0.5 908,709 + PS417_04050 0.52 -0.3 909,315 + PS417_04055 0.14 -0.9 909,365 + PS417_04055 0.19 +0.4 909,522 + PS417_04055 0.37 -0.1 909,523 - PS417_04055 0.37 -0.2 909,570 + PS417_04055 0.42 -0.5 909,570 + PS417_04055 0.42 +1.2 909,916 - PS417_04055 0.80 -1.7 909,932 - PS417_04055 0.82 -0.5
Or see this region's nucleotide sequence