Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00305 and PS417_00310 are separated by 21 nucleotides PS417_00310 and PS417_00315 are separated by 35 nucleotides PS417_00315 and PS417_00320 are separated by 6 nucleotides PS417_00320 and PS417_00325 are separated by 28 nucleotides
PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878
_00305
PS417_00310: PS417_00310 - cysteine synthase, at 61,900 to 62,451
_00310
PS417_00315: PS417_00315 - MFS transporter, at 62,487 to 63,374
_00315
PS417_00320: PS417_00320 - hypothetical protein, at 63,381 to 63,584
_00320
PS417_00325: PS417_00325 - hypothetical protein, at 63,613 to 64,377
_00325
PS417_00330: PS417_00330 - hypothetical protein, at 64,343 to 64,927
_00330
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1 at 61.517 kb on - strand, within PS417_00305 at 61.519 kb on + strand, within PS417_00305 at 61.520 kb on - strand, within PS417_00305 at 61.549 kb on + strand, within PS417_00305 at 61.550 kb on - strand, within PS417_00305 at 61.663 kb on + strand, within PS417_00305 at 61.994 kb on - strand, within PS417_00310 at 61.994 kb on - strand, within PS417_00310 at 62.151 kb on - strand, within PS417_00310 at 62.238 kb on + strand, within PS417_00310 at 62.239 kb on - strand, within PS417_00310 at 62.239 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.264 kb on - strand, within PS417_00310 at 62.344 kb on - strand, within PS417_00310 at 62.449 kb on + strand at 62.453 kb on + strand at 62.505 kb on + strand at 62.505 kb on + strand at 62.505 kb on + strand at 62.506 kb on - strand at 62.508 kb on + strand at 62.537 kb on - strand at 62.537 kb on - strand at 62.537 kb on - strand at 62.661 kb on + strand, within PS417_00315 at 62.816 kb on - strand, within PS417_00315 at 62.931 kb on + strand, within PS417_00315 at 63.124 kb on - strand, within PS417_00315 at 63.124 kb on - strand, within PS417_00315 at 63.171 kb on + strand, within PS417_00315 at 63.172 kb on - strand, within PS417_00315 at 63.234 kb on - strand, within PS417_00315 at 63.364 kb on - strand at 63.364 kb on - strand at 63.364 kb on - strand at 63.624 kb on + strand at 63.624 kb on + strand at 63.625 kb on - strand at 63.625 kb on - strand at 63.625 kb on - strand at 63.625 kb on - strand at 63.625 kb on - strand at 63.627 kb on - strand at 63.638 kb on + strand at 63.638 kb on + strand at 63.639 kb on - strand at 63.760 kb on + strand, within PS417_00325 at 63.761 kb on - strand, within PS417_00325 at 63.761 kb on - strand, within PS417_00325 at 63.761 kb on - strand, within PS417_00325 at 63.761 kb on - strand, within PS417_00325 at 64.051 kb on + strand, within PS417_00325 at 64.052 kb on - strand, within PS417_00325 at 64.052 kb on - strand, within PS417_00325 at 64.174 kb on + strand, within PS417_00325 at 64.303 kb on + strand at 64.303 kb on + strand at 64.303 kb on + strand at 64.303 kb on + strand at 64.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 61,517 - PS417_00305 0.77 -0.5 61,519 + PS417_00305 0.77 +0.6 61,520 - PS417_00305 0.77 +0.6 61,549 + PS417_00305 0.79 -0.5 61,550 - PS417_00305 0.79 +0.4 61,663 + PS417_00305 0.86 -0.2 61,994 - PS417_00310 0.17 -1.6 61,994 - PS417_00310 0.17 -0.5 62,151 - PS417_00310 0.45 -0.8 62,238 + PS417_00310 0.61 -1.1 62,239 - PS417_00310 0.61 -0.3 62,239 - PS417_00310 0.61 -0.5 62,264 - PS417_00310 0.66 -0.2 62,264 - PS417_00310 0.66 +0.7 62,264 - PS417_00310 0.66 +0.4 62,344 - PS417_00310 0.80 -0.2 62,449 + -0.5 62,453 + +0.5 62,505 + -0.1 62,505 + -0.1 62,505 + -0.3 62,506 - -0.2 62,508 + +0.0 62,537 - +0.6 62,537 - -0.2 62,537 - +1.0 62,661 + PS417_00315 0.20 +0.7 62,816 - PS417_00315 0.37 -0.9 62,931 + PS417_00315 0.50 +0.8 63,124 - PS417_00315 0.72 -1.3 63,124 - PS417_00315 0.72 -0.1 63,171 + PS417_00315 0.77 -0.3 63,172 - PS417_00315 0.77 +0.3 63,234 - PS417_00315 0.84 -0.2 63,364 - -0.2 63,364 - -0.2 63,364 - +0.0 63,624 + +1.5 63,624 + +0.1 63,625 - +0.3 63,625 - -0.5 63,625 - +0.2 63,625 - +0.6 63,625 - -0.4 63,627 - -2.6 63,638 + +0.9 63,638 + +0.2 63,639 - -0.3 63,760 + PS417_00325 0.19 -0.8 63,761 - PS417_00325 0.19 +0.0 63,761 - PS417_00325 0.19 +0.2 63,761 - PS417_00325 0.19 -0.3 63,761 - PS417_00325 0.19 -0.8 64,051 + PS417_00325 0.57 +0.5 64,052 - PS417_00325 0.57 +0.5 64,052 - PS417_00325 0.57 +0.9 64,174 + PS417_00325 0.73 +0.5 64,303 + +0.5 64,303 + -0.4 64,303 + -0.2 64,303 + +0.2 64,310 - +0.2
Or see this region's nucleotide sequence