Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03095 and PS417_03100 overlap by 4 nucleotides PS417_03100 and PS417_03105 overlap by 4 nucleotides
PS417_03095: PS417_03095 - ATPase, at 710,106 to 711,377
_03095
PS417_03100: PS417_03100 - pilus assembly protein, at 711,374 to 712,567
_03100
PS417_03105: PS417_03105 - secretin, at 712,564 to 713,781
_03105
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1 at 710.460 kb on + strand, within PS417_03095 at 710.460 kb on + strand, within PS417_03095 at 710.461 kb on - strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.598 kb on + strand, within PS417_03095 at 710.599 kb on - strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.185 kb on + strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.186 kb on - strand, within PS417_03095 at 711.197 kb on - strand, within PS417_03095 at 711.289 kb on + strand at 711.289 kb on + strand at 711.290 kb on - strand at 712.403 kb on + strand, within PS417_03100 at 712.404 kb on - strand, within PS417_03100 at 712.582 kb on - strand at 712.637 kb on + strand at 712.637 kb on + strand at 712.944 kb on - strand, within PS417_03105 at 712.944 kb on - strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.039 kb on + strand, within PS417_03105 at 713.040 kb on - strand, within PS417_03105
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 710,460 + PS417_03095 0.28 -0.0 710,460 + PS417_03095 0.28 -0.6 710,461 - PS417_03095 0.28 +0.5 710,598 + PS417_03095 0.39 -0.3 710,598 + PS417_03095 0.39 -0.1 710,598 + PS417_03095 0.39 -0.6 710,598 + PS417_03095 0.39 -0.0 710,599 - PS417_03095 0.39 -2.3 711,185 + PS417_03095 0.85 -0.1 711,185 + PS417_03095 0.85 -0.3 711,185 + PS417_03095 0.85 +0.0 711,186 - PS417_03095 0.85 -0.4 711,186 - PS417_03095 0.85 +0.1 711,197 - PS417_03095 0.86 +0.9 711,289 + -0.5 711,289 + -0.1 711,290 - +0.1 712,403 + PS417_03100 0.86 -0.8 712,404 - PS417_03100 0.86 -0.5 712,582 - +0.5 712,637 + -0.0 712,637 + +0.3 712,944 - PS417_03105 0.31 -0.4 712,944 - PS417_03105 0.31 +0.0 713,039 + PS417_03105 0.39 +0.2 713,039 + PS417_03105 0.39 +0.1 713,040 - PS417_03105 0.39 -0.2
Or see this region's nucleotide sequence