Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02620 and PS417_02625 are separated by 332 nucleotides PS417_02625 and PS417_02630 are separated by 136 nucleotides PS417_02630 and PS417_02635 are separated by 3 nucleotides
PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362
_02620
PS417_02625: PS417_02625 - azurin, at 600,695 to 601,141
_02625
PS417_02630: PS417_02630 - NAD synthetase, at 601,278 to 602,105
_02630
PS417_02635: PS417_02635 - nicotinate phosphoribosyltransferase, at 602,109 to 603,323
_02635
Position (kb) 601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 600.347 kb on - strand at 600.347 kb on - strand at 600.350 kb on + strand at 600.350 kb on + strand at 600.351 kb on - strand at 600.351 kb on - strand at 600.375 kb on - strand at 600.424 kb on + strand at 600.467 kb on - strand at 600.539 kb on + strand at 600.553 kb on + strand at 600.554 kb on - strand at 600.554 kb on - strand at 600.554 kb on - strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.566 kb on - strand at 600.566 kb on - strand at 600.625 kb on - strand at 601.077 kb on - strand at 601.139 kb on + strand at 601.139 kb on + strand at 601.140 kb on - strand at 601.334 kb on + strand at 601.393 kb on + strand, within PS417_02630 at 601.394 kb on - strand at 601.394 kb on - strand, within PS417_02630 at 601.646 kb on - strand, within PS417_02630 at 601.646 kb on - strand, within PS417_02630 at 602.133 kb on + strand at 602.315 kb on + strand, within PS417_02635 at 602.316 kb on - strand, within PS417_02635 at 602.379 kb on + strand, within PS417_02635 at 602.419 kb on + strand, within PS417_02635 at 602.498 kb on - strand, within PS417_02635 at 602.498 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.746 kb on - strand, within PS417_02635 at 602.866 kb on + strand, within PS417_02635 at 602.997 kb on + strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 602.998 kb on - strand, within PS417_02635 at 603.028 kb on + strand, within PS417_02635
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 600,347 - +0.2 600,347 - +0.7 600,350 + -0.2 600,350 + -0.6 600,351 - +0.6 600,351 - -0.1 600,375 - -0.5 600,424 + -0.6 600,467 - +0.2 600,539 + +0.1 600,553 + +0.0 600,554 - +0.1 600,554 - +0.3 600,554 - -0.4 600,565 + +0.1 600,565 + -0.3 600,566 - +0.0 600,566 - +0.5 600,625 - -0.2 601,077 - +2.0 601,139 + +0.0 601,139 + -0.3 601,140 - -0.1 601,334 + -0.7 601,393 + PS417_02630 0.14 -1.6 601,394 - -0.6 601,394 - PS417_02630 0.14 -2.6 601,646 - PS417_02630 0.44 -0.6 601,646 - PS417_02630 0.44 -1.0 602,133 + -0.3 602,315 + PS417_02635 0.17 +0.4 602,316 - PS417_02635 0.17 -0.3 602,379 + PS417_02635 0.22 +0.3 602,419 + PS417_02635 0.26 -0.1 602,498 - PS417_02635 0.32 -0.1 602,498 - PS417_02635 0.32 +0.2 602,746 - PS417_02635 0.52 -0.1 602,746 - PS417_02635 0.52 -0.3 602,866 + PS417_02635 0.62 +0.1 602,997 + PS417_02635 0.73 +0.2 602,998 - PS417_02635 0.73 -0.2 602,998 - PS417_02635 0.73 -0.4 603,028 + PS417_02635 0.76 -0.7
Or see this region's nucleotide sequence