Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23760 and PS417_23765 overlap by 4 nucleotides PS417_23765 and PS417_23770 are separated by 142 nucleotides PS417_23770 and PS417_23775 overlap by 4 nucleotides
PS417_23760: PS417_23760 - DeoR faimly transcriptional regulator, at 5,136,086 to 5,137,348
_23760
PS417_23765: PS417_23765 - hypothetical protein, at 5,137,345 to 5,137,920
_23765
PS417_23770: PS417_23770 - exodeoxyribonuclease V subunit alpha, at 5,138,063 to 5,140,132
_23770
PS417_23775: PS417_23775 - exodeoxyribonuclease V subunit beta, at 5,140,129 to 5,143,803
_23775
Position (kb)
5138
5139
5140
5141 Strain fitness (log2 ratio)
-1
0
1 at 5137.176 kb on + strand, within PS417_23760 at 5137.176 kb on + strand, within PS417_23760 at 5137.177 kb on - strand, within PS417_23760 at 5137.219 kb on - strand, within PS417_23760 at 5137.400 kb on - strand at 5137.580 kb on + strand, within PS417_23765 at 5137.580 kb on + strand, within PS417_23765 at 5137.581 kb on - strand, within PS417_23765 at 5137.707 kb on + strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.867 kb on + strand at 5137.868 kb on - strand at 5137.947 kb on - strand at 5138.049 kb on + strand at 5138.050 kb on - strand at 5138.125 kb on + strand at 5138.126 kb on - strand at 5138.205 kb on + strand at 5138.715 kb on + strand, within PS417_23770 at 5139.694 kb on - strand, within PS417_23770 at 5140.064 kb on + strand at 5140.064 kb on + strand at 5140.132 kb on + strand at 5140.132 kb on + strand at 5140.133 kb on - strand at 5140.996 kb on - strand, within PS417_23775
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 5,137,176 + PS417_23760 0.86 -0.1 5,137,176 + PS417_23760 0.86 -0.3 5,137,177 - PS417_23760 0.86 -0.1 5,137,219 - PS417_23760 0.90 +0.2 5,137,400 - +0.5 5,137,580 + PS417_23765 0.41 -0.2 5,137,580 + PS417_23765 0.41 -0.6 5,137,581 - PS417_23765 0.41 -0.5 5,137,707 + PS417_23765 0.63 -0.2 5,137,708 - PS417_23765 0.63 -0.2 5,137,708 - PS417_23765 0.63 -0.4 5,137,749 - PS417_23765 0.70 +0.1 5,137,749 - PS417_23765 0.70 +1.5 5,137,867 + -0.4 5,137,868 - -0.8 5,137,947 - -0.2 5,138,049 + +0.9 5,138,050 - -0.5 5,138,125 + +0.2 5,138,126 - -0.7 5,138,205 + +0.1 5,138,715 + PS417_23770 0.31 -1.2 5,139,694 - PS417_23770 0.79 -0.6 5,140,064 + -0.2 5,140,064 + -0.1 5,140,132 + -0.2 5,140,132 + +1.1 5,140,133 - -0.0 5,140,996 - PS417_23775 0.24 -1.1
Or see this region's nucleotide sequence