Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23300 and PS417_23305 are separated by 291 nucleotides PS417_23305 and PS417_23310 are separated by 42 nucleotides PS417_23310 and PS417_23315 are separated by 209 nucleotides PS417_23315 and PS417_23320 are separated by 195 nucleotides
PS417_23300: PS417_23300 - hypothetical protein, at 5,044,504 to 5,044,875
_23300
PS417_23305: PS417_23305 - cytochrome C, at 5,045,167 to 5,045,544
_23305
PS417_23310: PS417_23310 - glyoxalase, at 5,045,587 to 5,046,018
_23310
PS417_23315: PS417_23315 - transcriptional regulator, at 5,046,228 to 5,046,608
_23315
PS417_23320: PS417_23320 - heme oxygenase, at 5,046,804 to 5,047,418
_23320
Position (kb) 5045
5046
5047 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5044.609 kb on + strand, within PS417_23300 at 5044.609 kb on + strand, within PS417_23300 at 5044.610 kb on - strand, within PS417_23300 at 5044.610 kb on - strand, within PS417_23300 at 5044.638 kb on + strand, within PS417_23300 at 5044.639 kb on - strand, within PS417_23300 at 5044.711 kb on + strand, within PS417_23300 at 5044.729 kb on + strand, within PS417_23300 at 5044.730 kb on - strand, within PS417_23300 at 5044.924 kb on - strand at 5045.080 kb on + strand at 5045.080 kb on + strand at 5045.135 kb on - strand at 5045.135 kb on - strand at 5045.209 kb on + strand, within PS417_23305 at 5045.209 kb on + strand, within PS417_23305 at 5045.209 kb on + strand, within PS417_23305 at 5045.209 kb on + strand, within PS417_23305 at 5045.210 kb on - strand, within PS417_23305 at 5045.210 kb on - strand, within PS417_23305 at 5045.210 kb on - strand, within PS417_23305 at 5045.210 kb on - strand, within PS417_23305 at 5045.210 kb on - strand, within PS417_23305 at 5045.210 kb on - strand, within PS417_23305 at 5045.261 kb on - strand, within PS417_23305 at 5045.282 kb on + strand, within PS417_23305 at 5045.283 kb on - strand, within PS417_23305 at 5045.346 kb on - strand, within PS417_23305 at 5045.346 kb on - strand, within PS417_23305 at 5045.448 kb on + strand, within PS417_23305 at 5045.455 kb on + strand, within PS417_23305 at 5045.456 kb on - strand, within PS417_23305 at 5045.588 kb on + strand at 5045.588 kb on + strand at 5045.589 kb on - strand at 5045.589 kb on - strand at 5045.598 kb on + strand at 5045.598 kb on + strand at 5045.598 kb on + strand at 5045.599 kb on - strand at 5045.855 kb on + strand, within PS417_23310 at 5045.856 kb on - strand, within PS417_23310 at 5045.856 kb on - strand, within PS417_23310 at 5045.856 kb on - strand, within PS417_23310 at 5046.018 kb on + strand at 5046.019 kb on - strand at 5046.019 kb on - strand at 5046.019 kb on - strand at 5046.136 kb on + strand at 5046.137 kb on - strand at 5046.137 kb on - strand at 5046.137 kb on - strand at 5046.189 kb on + strand at 5046.189 kb on + strand at 5046.200 kb on + strand at 5046.200 kb on + strand at 5046.200 kb on + strand at 5046.200 kb on + strand at 5046.200 kb on + strand at 5046.201 kb on - strand at 5046.351 kb on + strand, within PS417_23315 at 5046.489 kb on - strand, within PS417_23315 at 5046.719 kb on - strand at 5046.723 kb on + strand at 5046.724 kb on - strand at 5046.741 kb on - strand at 5046.741 kb on - strand at 5046.933 kb on + strand, within PS417_23320 at 5046.934 kb on - strand, within PS417_23320 at 5046.955 kb on - strand, within PS417_23320 at 5046.955 kb on - strand, within PS417_23320 at 5046.958 kb on - strand, within PS417_23320 at 5046.958 kb on - strand, within PS417_23320 at 5046.958 kb on - strand, within PS417_23320
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 5,044,609 + PS417_23300 0.28 -0.1 5,044,609 + PS417_23300 0.28 +0.6 5,044,610 - PS417_23300 0.28 -0.3 5,044,610 - PS417_23300 0.28 -0.3 5,044,638 + PS417_23300 0.36 +0.5 5,044,639 - PS417_23300 0.36 -0.2 5,044,711 + PS417_23300 0.56 +0.2 5,044,729 + PS417_23300 0.60 -0.5 5,044,730 - PS417_23300 0.61 -1.1 5,044,924 - -0.1 5,045,080 + +0.3 5,045,080 + -0.1 5,045,135 - +2.2 5,045,135 - +0.2 5,045,209 + PS417_23305 0.11 +0.1 5,045,209 + PS417_23305 0.11 +0.8 5,045,209 + PS417_23305 0.11 -0.1 5,045,209 + PS417_23305 0.11 +0.1 5,045,210 - PS417_23305 0.11 -0.2 5,045,210 - PS417_23305 0.11 +0.1 5,045,210 - PS417_23305 0.11 -0.1 5,045,210 - PS417_23305 0.11 +0.7 5,045,210 - PS417_23305 0.11 +0.2 5,045,210 - PS417_23305 0.11 -0.1 5,045,261 - PS417_23305 0.25 +0.5 5,045,282 + PS417_23305 0.30 -0.3 5,045,283 - PS417_23305 0.31 +0.3 5,045,346 - PS417_23305 0.47 +0.0 5,045,346 - PS417_23305 0.47 -0.3 5,045,448 + PS417_23305 0.74 -0.3 5,045,455 + PS417_23305 0.76 +0.2 5,045,456 - PS417_23305 0.76 +0.1 5,045,588 + +0.5 5,045,588 + -0.3 5,045,589 - -0.2 5,045,589 - +0.7 5,045,598 + +0.2 5,045,598 + +0.9 5,045,598 + -1.1 5,045,599 - -0.0 5,045,855 + PS417_23310 0.62 -0.8 5,045,856 - PS417_23310 0.62 +0.2 5,045,856 - PS417_23310 0.62 -0.3 5,045,856 - PS417_23310 0.62 -0.8 5,046,018 + +0.1 5,046,019 - -0.6 5,046,019 - -2.7 5,046,019 - +0.6 5,046,136 + -0.0 5,046,137 - +0.3 5,046,137 - -0.1 5,046,137 - +0.4 5,046,189 + +0.7 5,046,189 + -0.4 5,046,200 + -0.6 5,046,200 + -0.0 5,046,200 + +0.7 5,046,200 + +0.0 5,046,200 + -0.2 5,046,201 - +0.0 5,046,351 + PS417_23315 0.32 +0.0 5,046,489 - PS417_23315 0.69 +0.2 5,046,719 - +0.4 5,046,723 + +1.2 5,046,724 - -0.5 5,046,741 - -0.2 5,046,741 - +2.5 5,046,933 + PS417_23320 0.21 -0.8 5,046,934 - PS417_23320 0.21 -0.1 5,046,955 - PS417_23320 0.25 +0.6 5,046,955 - PS417_23320 0.25 -0.6 5,046,958 - PS417_23320 0.25 +0.0 5,046,958 - PS417_23320 0.25 +0.1 5,046,958 - PS417_23320 0.25 -0.4
Or see this region's nucleotide sequence