Strain Fitness in Pseudomonas simiae WCS417 around PS417_22875

Experiment: A22 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22870 and PS417_22875 are separated by 170 nucleotidesPS417_22875 and PS417_22880 are separated by 232 nucleotides PS417_22870: PS417_22870 - lipoprotein, at 4,956,819 to 4,957,682 _22870 PS417_22875: PS417_22875 - hypothetical protein, at 4,957,853 to 4,958,137 _22875 PS417_22880: PS417_22880 - threonine synthase, at 4,958,370 to 4,959,779 _22880 Position (kb) 4957 4958 4959Strain fitness (log2 ratio) -3 -2 -1 0 1at 4957.125 kb on + strand, within PS417_22870at 4957.282 kb on - strand, within PS417_22870at 4957.448 kb on + strand, within PS417_22870at 4957.594 kb on + strand, within PS417_22870at 4957.605 kb on + strandat 4957.642 kb on - strandat 4957.642 kb on - strandat 4957.665 kb on + strandat 4957.756 kb on + strandat 4957.757 kb on - strandat 4957.825 kb on + strandat 4957.825 kb on + strandat 4957.825 kb on + strandat 4957.826 kb on - strandat 4957.843 kb on - strandat 4957.966 kb on - strand, within PS417_22875at 4958.094 kb on + strand, within PS417_22875at 4958.120 kb on + strandat 4958.120 kb on + strandat 4958.120 kb on + strandat 4958.121 kb on - strandat 4958.129 kb on - strandat 4958.155 kb on - strandat 4958.155 kb on - strandat 4958.191 kb on - strandat 4958.195 kb on + strandat 4958.196 kb on - strandat 4958.196 kb on - strandat 4958.196 kb on - strandat 4958.215 kb on - strandat 4958.239 kb on - strandat 4958.308 kb on + strandat 4958.381 kb on + strandat 4958.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.16 mg/ml
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4,957,125 + PS417_22870 0.35 -0.4
4,957,282 - PS417_22870 0.54 +0.5
4,957,448 + PS417_22870 0.73 -0.7
4,957,594 + PS417_22870 0.90 +0.3
4,957,605 + +0.9
4,957,642 - +0.1
4,957,642 - +0.1
4,957,665 + +1.6
4,957,756 + -1.5
4,957,757 - -0.1
4,957,825 + +0.1
4,957,825 + -0.5
4,957,825 + -0.3
4,957,826 - -0.6
4,957,843 - -0.8
4,957,966 - PS417_22875 0.40 -0.0
4,958,094 + PS417_22875 0.85 +0.2
4,958,120 + -0.8
4,958,120 + -0.1
4,958,120 + +0.6
4,958,121 - -0.0
4,958,129 - +0.3
4,958,155 - -1.4
4,958,155 - -0.2
4,958,191 - +0.7
4,958,195 + +0.3
4,958,196 - +0.1
4,958,196 - -0.2
4,958,196 - +0.7
4,958,215 - -1.5
4,958,239 - -0.2
4,958,308 + +0.5
4,958,381 + -0.7
4,958,381 + -2.8

Or see this region's nucleotide sequence