Strain Fitness in Pseudomonas simiae WCS417 around PS417_21705
Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.16 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,707,463 | - | PS417_21700 | 0.28 | -1.4 | |
4,707,631 | - | PS417_21700 | 0.44 | -0.3 | |
4,707,901 | + | PS417_21700 | 0.71 | -0.6 | |
4,707,901 | + | PS417_21700 | 0.71 | +0.6 | |
4,707,902 | - | PS417_21700 | 0.71 | -0.3 | |
4,707,948 | + | PS417_21700 | 0.75 | -0.0 | |
4,708,205 | - | -0.2 | |||
4,708,345 | - | -0.6 | |||
4,708,524 | + | PS417_21705 | 0.27 | -0.4 | |
4,708,525 | - | PS417_21705 | 0.27 | -0.1 | |
4,708,633 | - | PS417_21705 | 0.37 | -0.9 | |
4,708,633 | - | PS417_21705 | 0.37 | -0.8 | |
4,708,633 | - | PS417_21705 | 0.37 | -0.3 | |
4,708,633 | - | PS417_21705 | 0.37 | +0.8 | |
4,708,633 | - | PS417_21705 | 0.37 | -2.1 | |
4,708,708 | - | PS417_21705 | 0.45 | -0.9 | |
4,709,010 | + | PS417_21705 | 0.74 | -2.4 | |
4,709,011 | - | PS417_21705 | 0.74 | -0.4 | |
4,710,220 | - | PS417_21710 | 0.57 | +0.0 | |
4,710,222 | - | PS417_21710 | 0.58 | +0.5 | |
4,710,270 | - | PS417_21710 | 0.62 | -0.6 | |
4,710,270 | - | PS417_21710 | 0.62 | +0.1 | |
4,710,270 | - | PS417_21710 | 0.62 | +0.1 |
Or see this region's nucleotide sequence