Strain Fitness in Pseudomonas simiae WCS417 around PS417_21515

Experiment: A22 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21510 and PS417_21515 overlap by 4 nucleotidesPS417_21515 and PS417_21520 are separated by 18 nucleotidesPS417_21520 and PS417_21525 are separated by 146 nucleotides PS417_21510: PS417_21510 - histidine kinase, at 4,670,970 to 4,672,316 _21510 PS417_21515: PS417_21515 - transcriptional regulator, at 4,672,313 to 4,672,990 _21515 PS417_21520: PS417_21520 - membrane protein, at 4,673,009 to 4,673,317 _21520 PS417_21525: PS417_21525 - 4'-phosphopantetheinyl transferase, at 4,673,464 to 4,674,180 _21525 Position (kb) 4672 4673Strain fitness (log2 ratio) -3 -2 -1 0 1at 4671.813 kb on + strand, within PS417_21510at 4672.003 kb on + strand, within PS417_21510at 4672.067 kb on + strand, within PS417_21510at 4672.068 kb on - strand, within PS417_21510at 4672.339 kb on - strandat 4672.513 kb on - strand, within PS417_21515at 4672.513 kb on - strand, within PS417_21515at 4672.533 kb on + strand, within PS417_21515at 4672.533 kb on + strandat 4672.698 kb on + strand, within PS417_21515at 4672.698 kb on + strand, within PS417_21515at 4672.698 kb on + strand, within PS417_21515at 4672.698 kb on + strand, within PS417_21515at 4672.698 kb on + strand, within PS417_21515at 4672.698 kb on + strand, within PS417_21515at 4672.698 kb on + strand, within PS417_21515at 4672.699 kb on - strand, within PS417_21515at 4672.699 kb on - strand, within PS417_21515at 4672.699 kb on - strand, within PS417_21515at 4672.699 kb on - strand, within PS417_21515at 4672.699 kb on - strand, within PS417_21515at 4672.699 kb on - strand, within PS417_21515at 4672.879 kb on - strand, within PS417_21515at 4673.324 kb on - strandat 4673.324 kb on - strandat 4673.329 kb on + strandat 4673.366 kb on + strandat 4673.367 kb on - strandat 4673.456 kb on + strandat 4673.456 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.16 mg/ml
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4,671,813 + PS417_21510 0.63 -1.7
4,672,003 + PS417_21510 0.77 -0.4
4,672,067 + PS417_21510 0.81 -0.6
4,672,068 - PS417_21510 0.82 -0.3
4,672,339 - -1.3
4,672,513 - PS417_21515 0.29 -2.1
4,672,513 - PS417_21515 0.29 -1.3
4,672,533 + PS417_21515 0.32 -2.7
4,672,533 + -0.5
4,672,698 + PS417_21515 0.57 -2.5
4,672,698 + PS417_21515 0.57 -0.4
4,672,698 + PS417_21515 0.57 -1.0
4,672,698 + PS417_21515 0.57 -1.9
4,672,698 + PS417_21515 0.57 -1.2
4,672,698 + PS417_21515 0.57 -1.7
4,672,698 + PS417_21515 0.57 -1.3
4,672,699 - PS417_21515 0.57 -1.8
4,672,699 - PS417_21515 0.57 -2.8
4,672,699 - PS417_21515 0.57 -1.5
4,672,699 - PS417_21515 0.57 -2.3
4,672,699 - PS417_21515 0.57 -1.8
4,672,699 - PS417_21515 0.57 -0.9
4,672,879 - PS417_21515 0.83 -3.4
4,673,324 - -1.5
4,673,324 - -1.5
4,673,329 + -1.2
4,673,366 + -0.9
4,673,367 - +1.1
4,673,456 + -0.4
4,673,456 + -0.3

Or see this region's nucleotide sequence