Strain Fitness in Pseudomonas simiae WCS417 around PS417_21515
Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | A22 0.16 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,671,813 | + | PS417_21510 | 0.63 | -1.7 | |
4,672,003 | + | PS417_21510 | 0.77 | -0.4 | |
4,672,067 | + | PS417_21510 | 0.81 | -0.6 | |
4,672,068 | - | PS417_21510 | 0.82 | -0.3 | |
4,672,339 | - | -1.3 | |||
4,672,513 | - | PS417_21515 | 0.29 | -2.1 | |
4,672,513 | - | PS417_21515 | 0.29 | -1.3 | |
4,672,533 | + | PS417_21515 | 0.32 | -2.7 | |
4,672,533 | + | -0.5 | |||
4,672,698 | + | PS417_21515 | 0.57 | -2.5 | |
4,672,698 | + | PS417_21515 | 0.57 | -0.4 | |
4,672,698 | + | PS417_21515 | 0.57 | -1.0 | |
4,672,698 | + | PS417_21515 | 0.57 | -1.9 | |
4,672,698 | + | PS417_21515 | 0.57 | -1.2 | |
4,672,698 | + | PS417_21515 | 0.57 | -1.7 | |
4,672,698 | + | PS417_21515 | 0.57 | -1.3 | |
4,672,699 | - | PS417_21515 | 0.57 | -1.8 | |
4,672,699 | - | PS417_21515 | 0.57 | -2.8 | |
4,672,699 | - | PS417_21515 | 0.57 | -1.5 | |
4,672,699 | - | PS417_21515 | 0.57 | -2.3 | |
4,672,699 | - | PS417_21515 | 0.57 | -1.8 | |
4,672,699 | - | PS417_21515 | 0.57 | -0.9 | |
4,672,879 | - | PS417_21515 | 0.83 | -3.4 | |
4,673,324 | - | -1.5 | |||
4,673,324 | - | -1.5 | |||
4,673,329 | + | -1.2 | |||
4,673,366 | + | -0.9 | |||
4,673,367 | - | +1.1 | |||
4,673,456 | + | -0.4 | |||
4,673,456 | + | -0.3 |
Or see this region's nucleotide sequence