Strain Fitness in Pseudomonas simiae WCS417 around PS417_16535

Experiment: A22 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16530 and PS417_16535 are separated by 226 nucleotidesPS417_16535 and PS417_16540 are separated by 59 nucleotides PS417_16530: PS417_16530 - isocitrate dehydrogenase, at 3,611,310 to 3,613,535 _16530 PS417_16535: PS417_16535 - NUDIX hydrolase, at 3,613,762 to 3,614,208 _16535 PS417_16540: PS417_16540 - tRNA 2-thiouridylase, at 3,614,268 to 3,615,392 _16540 Position (kb) 3613 3614 3615Strain fitness (log2 ratio) -1 0 1at 3613.453 kb on - strandat 3613.533 kb on + strandat 3613.533 kb on + strandat 3613.534 kb on - strandat 3613.541 kb on + strandat 3613.542 kb on - strandat 3613.672 kb on + strandat 3613.673 kb on - strandat 3613.673 kb on - strandat 3613.673 kb on - strandat 3613.673 kb on - strandat 3613.969 kb on + strand, within PS417_16535at 3613.970 kb on - strand, within PS417_16535at 3613.970 kb on - strand, within PS417_16535at 3613.975 kb on + strand, within PS417_16535at 3614.002 kb on + strandat 3614.050 kb on + strand, within PS417_16535at 3614.207 kb on - strandat 3614.267 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.16 mg/ml
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3,613,453 - -0.6
3,613,533 + -0.0
3,613,533 + +0.1
3,613,534 - +0.1
3,613,541 + +0.1
3,613,542 - +0.7
3,613,672 + +1.6
3,613,673 - -0.2
3,613,673 - +0.2
3,613,673 - +0.2
3,613,673 - -1.0
3,613,969 + PS417_16535 0.46 -0.4
3,613,970 - PS417_16535 0.47 -0.8
3,613,970 - PS417_16535 0.47 -0.3
3,613,975 + PS417_16535 0.48 -0.2
3,614,002 + +0.9
3,614,050 + PS417_16535 0.64 -0.7
3,614,207 - +0.4
3,614,267 + +0.4

Or see this region's nucleotide sequence