Strain Fitness in Pseudomonas simiae WCS417 around PS417_15780

Experiment: A22 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15775 and PS417_15780 are separated by 43 nucleotidesPS417_15780 and PS417_15785 are separated by 75 nucleotides PS417_15775: PS417_15775 - short-chain dehydrogenase, at 3,458,435 to 3,459,610 _15775 PS417_15780: PS417_15780 - membrane protein, at 3,459,654 to 3,460,097 _15780 PS417_15785: PS417_15785 - porin, at 3,460,173 to 3,461,489 _15785 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -2 -1 0 1at 3458.791 kb on - strand, within PS417_15775at 3458.791 kb on - strand, within PS417_15775at 3458.934 kb on + strand, within PS417_15775at 3458.934 kb on + strand, within PS417_15775at 3459.639 kb on + strandat 3459.640 kb on - strandat 3459.640 kb on - strandat 3459.705 kb on - strand, within PS417_15780at 3459.750 kb on + strand, within PS417_15780at 3459.751 kb on - strand, within PS417_15780at 3459.767 kb on + strandat 3459.921 kb on + strand, within PS417_15780at 3459.922 kb on - strand, within PS417_15780at 3460.086 kb on + strandat 3460.086 kb on + strandat 3460.087 kb on - strandat 3460.091 kb on - strandat 3460.193 kb on - strandat 3460.301 kb on - strandat 3460.372 kb on + strand, within PS417_15785at 3460.372 kb on + strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.373 kb on - strand, within PS417_15785at 3460.420 kb on + strand, within PS417_15785at 3460.421 kb on - strand, within PS417_15785at 3460.421 kb on - strand, within PS417_15785at 3460.421 kb on - strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strand, within PS417_15785at 3460.426 kb on + strandat 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strand, within PS417_15785at 3460.427 kb on - strandat 3460.588 kb on + strand, within PS417_15785at 3460.588 kb on + strand, within PS417_15785at 3460.588 kb on + strand, within PS417_15785at 3460.667 kb on - strand, within PS417_15785at 3460.766 kb on + strand, within PS417_15785at 3460.816 kb on + strand, within PS417_15785at 3460.816 kb on + strand, within PS417_15785at 3460.817 kb on - strand, within PS417_15785at 3460.819 kb on + strand, within PS417_15785at 3460.819 kb on + strand, within PS417_15785at 3460.820 kb on - strand, within PS417_15785at 3460.871 kb on - strand, within PS417_15785

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.16 mg/ml
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3,458,791 - PS417_15775 0.30 -0.0
3,458,791 - PS417_15775 0.30 +0.3
3,458,934 + PS417_15775 0.42 -2.1
3,458,934 + PS417_15775 0.42 +0.4
3,459,639 + -0.8
3,459,640 - +0.7
3,459,640 - -0.8
3,459,705 - PS417_15780 0.11 -0.9
3,459,750 + PS417_15780 0.22 +0.4
3,459,751 - PS417_15780 0.22 -0.7
3,459,767 + -1.8
3,459,921 + PS417_15780 0.60 -0.2
3,459,922 - PS417_15780 0.60 -0.6
3,460,086 + -0.0
3,460,086 + +0.3
3,460,087 - -0.4
3,460,091 - +0.1
3,460,193 - +0.2
3,460,301 - -0.2
3,460,372 + PS417_15785 0.15 +0.2
3,460,372 + PS417_15785 0.15 +0.0
3,460,373 - PS417_15785 0.15 +0.4
3,460,373 - PS417_15785 0.15 +0.1
3,460,373 - PS417_15785 0.15 +0.1
3,460,373 - PS417_15785 0.15 +0.1
3,460,373 - PS417_15785 0.15 +0.5
3,460,420 + PS417_15785 0.19 +0.0
3,460,421 - PS417_15785 0.19 +0.1
3,460,421 - PS417_15785 0.19 -0.3
3,460,421 - PS417_15785 0.19 +0.8
3,460,426 + PS417_15785 0.19 -0.7
3,460,426 + PS417_15785 0.19 -0.4
3,460,426 + PS417_15785 0.19 +0.9
3,460,426 + PS417_15785 0.19 +0.6
3,460,426 + PS417_15785 0.19 +0.2
3,460,426 + PS417_15785 0.19 +0.0
3,460,426 + -0.1
3,460,427 - PS417_15785 0.19 -0.2
3,460,427 - PS417_15785 0.19 -0.2
3,460,427 - PS417_15785 0.19 -0.1
3,460,427 - PS417_15785 0.19 -0.4
3,460,427 - PS417_15785 0.19 +0.1
3,460,427 - PS417_15785 0.19 -0.1
3,460,427 - PS417_15785 0.19 -0.6
3,460,427 - +0.5
3,460,588 + PS417_15785 0.32 +0.4
3,460,588 + PS417_15785 0.32 -0.5
3,460,588 + PS417_15785 0.32 -0.0
3,460,667 - PS417_15785 0.38 -0.4
3,460,766 + PS417_15785 0.45 +0.8
3,460,816 + PS417_15785 0.49 +0.4
3,460,816 + PS417_15785 0.49 -0.7
3,460,817 - PS417_15785 0.49 +0.9
3,460,819 + PS417_15785 0.49 +0.0
3,460,819 + PS417_15785 0.49 +0.4
3,460,820 - PS417_15785 0.49 -0.1
3,460,871 - PS417_15785 0.53 +0.2

Or see this region's nucleotide sequence