Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15580 and PS417_15585 overlap by 4 nucleotides PS417_15585 and PS417_15590 are separated by 7 nucleotides PS417_15590 and PS417_15595 overlap by 1 nucleotides
PS417_15580: PS417_15580 - DNA polymerase, at 3,414,608 to 3,417,679
_15580
PS417_15585: PS417_15585 - DNA repair nucleotidyltransferase, at 3,417,676 to 3,419,088
_15585
PS417_15590: PS417_15590 - hypothetical protein, at 3,419,096 to 3,419,710
_15590
PS417_15595: PS417_15595 - LexA family transcriptional regulator, at 3,419,710 to 3,420,327
_15595
Position (kb)
3417
3418
3419
3420 Strain fitness (log2 ratio)
-2
-1
0
1 at 3416.749 kb on + strand, within PS417_15580 at 3417.078 kb on - strand, within PS417_15580 at 3417.672 kb on + strand at 3417.767 kb on + strand at 3417.767 kb on + strand at 3418.631 kb on + strand, within PS417_15585 at 3418.636 kb on - strand, within PS417_15585 at 3418.796 kb on + strand, within PS417_15585 at 3418.797 kb on - strand, within PS417_15585 at 3418.874 kb on + strand, within PS417_15585 at 3418.875 kb on - strand, within PS417_15585 at 3419.073 kb on + strand at 3419.073 kb on + strand at 3419.449 kb on + strand, within PS417_15590 at 3419.449 kb on + strand, within PS417_15590 at 3419.450 kb on - strand, within PS417_15590 at 3419.451 kb on + strand, within PS417_15590 at 3419.786 kb on + strand, within PS417_15595 at 3419.935 kb on - strand, within PS417_15595
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 3,416,749 + PS417_15580 0.70 +0.8 3,417,078 - PS417_15580 0.80 +1.0 3,417,672 + -0.1 3,417,767 + +0.2 3,417,767 + -0.1 3,418,631 + PS417_15585 0.68 -0.0 3,418,636 - PS417_15585 0.68 +0.0 3,418,796 + PS417_15585 0.79 -0.3 3,418,797 - PS417_15585 0.79 -2.1 3,418,874 + PS417_15585 0.85 -0.5 3,418,875 - PS417_15585 0.85 -0.9 3,419,073 + -0.7 3,419,073 + -0.6 3,419,449 + PS417_15590 0.57 +0.0 3,419,449 + PS417_15590 0.57 +0.5 3,419,450 - PS417_15590 0.58 +0.1 3,419,451 + PS417_15590 0.58 -0.4 3,419,786 + PS417_15595 0.12 +1.6 3,419,935 - PS417_15595 0.36 -0.0
Or see this region's nucleotide sequence