Strain Fitness in Pseudomonas simiae WCS417 around PS417_15585

Experiment: A22 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15580 and PS417_15585 overlap by 4 nucleotidesPS417_15585 and PS417_15590 are separated by 7 nucleotidesPS417_15590 and PS417_15595 overlap by 1 nucleotides PS417_15580: PS417_15580 - DNA polymerase, at 3,414,608 to 3,417,679 _15580 PS417_15585: PS417_15585 - DNA repair nucleotidyltransferase, at 3,417,676 to 3,419,088 _15585 PS417_15590: PS417_15590 - hypothetical protein, at 3,419,096 to 3,419,710 _15590 PS417_15595: PS417_15595 - LexA family transcriptional regulator, at 3,419,710 to 3,420,327 _15595 Position (kb) 3417 3418 3419 3420Strain fitness (log2 ratio) -2 -1 0 1at 3416.749 kb on + strand, within PS417_15580at 3417.078 kb on - strand, within PS417_15580at 3417.672 kb on + strandat 3417.767 kb on + strandat 3417.767 kb on + strandat 3418.631 kb on + strand, within PS417_15585at 3418.636 kb on - strand, within PS417_15585at 3418.796 kb on + strand, within PS417_15585at 3418.797 kb on - strand, within PS417_15585at 3418.874 kb on + strand, within PS417_15585at 3418.875 kb on - strand, within PS417_15585at 3419.073 kb on + strandat 3419.073 kb on + strandat 3419.449 kb on + strand, within PS417_15590at 3419.449 kb on + strand, within PS417_15590at 3419.450 kb on - strand, within PS417_15590at 3419.451 kb on + strand, within PS417_15590at 3419.786 kb on + strand, within PS417_15595at 3419.935 kb on - strand, within PS417_15595

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.16 mg/ml
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3,416,749 + PS417_15580 0.70 +0.8
3,417,078 - PS417_15580 0.80 +1.0
3,417,672 + -0.1
3,417,767 + +0.2
3,417,767 + -0.1
3,418,631 + PS417_15585 0.68 -0.0
3,418,636 - PS417_15585 0.68 +0.0
3,418,796 + PS417_15585 0.79 -0.3
3,418,797 - PS417_15585 0.79 -2.1
3,418,874 + PS417_15585 0.85 -0.5
3,418,875 - PS417_15585 0.85 -0.9
3,419,073 + -0.7
3,419,073 + -0.6
3,419,449 + PS417_15590 0.57 +0.0
3,419,449 + PS417_15590 0.57 +0.5
3,419,450 - PS417_15590 0.58 +0.1
3,419,451 + PS417_15590 0.58 -0.4
3,419,786 + PS417_15595 0.12 +1.6
3,419,935 - PS417_15595 0.36 -0.0

Or see this region's nucleotide sequence