Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07855 and PS417_07860 are separated by 99 nucleotides PS417_07860 and PS417_07865 overlap by 4 nucleotides PS417_07865 and PS417_07870 overlap by 26 nucleotides
PS417_07855: PS417_07855 - hypothetical protein, at 1,723,290 to 1,723,565
_07855
PS417_07860: PS417_07860 - hypothetical protein, at 1,723,665 to 1,724,480
_07860
PS417_07865: PS417_07865 - hypothetical protein, at 1,724,477 to 1,724,872
_07865
PS417_07870: PS417_07870 - hypothetical protein, at 1,724,847 to 1,725,527
_07870
Position (kb)
1724
1725 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1723.670 kb on + strand at 1723.671 kb on - strand at 1723.825 kb on - strand, within PS417_07860 at 1723.834 kb on - strand at 1723.834 kb on - strand, within PS417_07860 at 1723.857 kb on + strand, within PS417_07860 at 1723.860 kb on - strand, within PS417_07860 at 1723.991 kb on + strand, within PS417_07860 at 1724.109 kb on + strand, within PS417_07860 at 1724.110 kb on - strand, within PS417_07860 at 1724.118 kb on - strand, within PS417_07860 at 1724.476 kb on + strand at 1724.634 kb on + strand, within PS417_07865 at 1724.635 kb on - strand, within PS417_07865 at 1724.846 kb on + strand at 1724.892 kb on - strand at 1725.006 kb on + strand, within PS417_07870 at 1725.202 kb on - strand, within PS417_07870 at 1725.229 kb on + strand, within PS417_07870 at 1725.230 kb on - strand, within PS417_07870 at 1725.230 kb on - strand at 1725.585 kb on - strand at 1725.634 kb on - strand at 1725.639 kb on + strand at 1725.640 kb on - strand at 1725.750 kb on - strand at 1725.801 kb on + strand at 1725.801 kb on + strand at 1725.802 kb on - strand at 1725.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 1,723,670 + -2.0 1,723,671 - +0.3 1,723,825 - PS417_07860 0.20 -0.5 1,723,834 - -2.2 1,723,834 - PS417_07860 0.21 +0.0 1,723,857 + PS417_07860 0.24 -0.2 1,723,860 - PS417_07860 0.24 -0.4 1,723,991 + PS417_07860 0.40 -0.3 1,724,109 + PS417_07860 0.54 -0.6 1,724,110 - PS417_07860 0.55 -0.4 1,724,118 - PS417_07860 0.56 -0.7 1,724,476 + +0.4 1,724,634 + PS417_07865 0.40 -0.5 1,724,635 - PS417_07865 0.40 -0.3 1,724,846 + -0.3 1,724,892 - -0.6 1,725,006 + PS417_07870 0.23 -1.1 1,725,202 - PS417_07870 0.52 -1.1 1,725,229 + PS417_07870 0.56 -0.5 1,725,230 - PS417_07870 0.56 +0.6 1,725,230 - -0.2 1,725,585 - +0.0 1,725,634 - -0.3 1,725,639 + +0.4 1,725,640 - -0.4 1,725,750 - +0.7 1,725,801 + +2.8 1,725,801 + +0.1 1,725,802 - +1.3 1,725,802 - +0.2
Or see this region's nucleotide sequence