Strain Fitness in Pseudomonas simiae WCS417 around PS417_06850

Experiment: A22 0.16 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06840 and PS417_06845 are separated by 238 nucleotidesPS417_06845 and PS417_06850 are separated by 18 nucleotidesPS417_06850 and PS417_06855 are separated by 28 nucleotidesPS417_06855 and PS417_06860 are separated by 130 nucleotides PS417_06840: PS417_06840 - beta-D-glucoside glucohydrolase, at 1,513,027 to 1,515,318 _06840 PS417_06845: PS417_06845 - lipoprotein, at 1,515,557 to 1,516,168 _06845 PS417_06850: PS417_06850 - methanol dehydrogenase, at 1,516,187 to 1,516,915 _06850 PS417_06855: PS417_06855 - membrane protein, at 1,516,944 to 1,517,561 _06855 PS417_06860: PS417_06860 - methyltransferase, at 1,517,692 to 1,518,909 _06860 Position (kb) 1516 1517Strain fitness (log2 ratio) -2 -1 0 1 2at 1515.352 kb on - strandat 1515.352 kb on - strandat 1515.352 kb on - strandat 1515.382 kb on + strandat 1515.383 kb on - strandat 1515.407 kb on + strandat 1515.408 kb on - strandat 1515.453 kb on - strandat 1515.490 kb on - strandat 1515.490 kb on - strandat 1515.509 kb on + strandat 1515.509 kb on + strandat 1515.510 kb on - strandat 1515.510 kb on - strandat 1515.512 kb on - strandat 1515.644 kb on - strand, within PS417_06845at 1515.644 kb on - strand, within PS417_06845at 1516.167 kb on - strandat 1516.195 kb on - strandat 1516.195 kb on - strandat 1516.419 kb on - strand, within PS417_06850at 1516.611 kb on - strand, within PS417_06850at 1516.922 kb on + strandat 1517.061 kb on + strand, within PS417_06855at 1517.061 kb on + strand, within PS417_06855at 1517.061 kb on + strand, within PS417_06855at 1517.061 kb on + strand, within PS417_06855at 1517.061 kb on + strand, within PS417_06855at 1517.062 kb on - strand, within PS417_06855at 1517.062 kb on - strand, within PS417_06855at 1517.062 kb on - strand, within PS417_06855at 1517.118 kb on + strand, within PS417_06855at 1517.118 kb on + strand, within PS417_06855at 1517.119 kb on - strand, within PS417_06855at 1517.119 kb on - strand, within PS417_06855at 1517.119 kb on - strand, within PS417_06855at 1517.142 kb on + strand, within PS417_06855at 1517.142 kb on + strand, within PS417_06855at 1517.142 kb on + strand, within PS417_06855at 1517.143 kb on - strand, within PS417_06855at 1517.143 kb on - strand, within PS417_06855at 1517.143 kb on - strand, within PS417_06855at 1517.347 kb on - strand, within PS417_06855at 1517.579 kb on + strandat 1517.579 kb on + strandat 1517.579 kb on + strandat 1517.580 kb on - strandat 1517.580 kb on - strandat 1517.603 kb on + strandat 1517.603 kb on + strandat 1517.604 kb on - strandat 1517.604 kb on - strandat 1517.604 kb on - strandat 1517.644 kb on + strandat 1517.806 kb on + strandat 1517.807 kb on - strandat 1517.894 kb on - strand, within PS417_06860

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.16 mg/ml
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1,515,352 - -0.3
1,515,352 - +0.2
1,515,352 - +0.4
1,515,382 + +0.9
1,515,383 - -2.3
1,515,407 + -0.4
1,515,408 - +0.6
1,515,453 - +0.3
1,515,490 - +0.7
1,515,490 - -0.3
1,515,509 + -0.6
1,515,509 + -0.1
1,515,510 - -0.1
1,515,510 - -0.1
1,515,512 - +0.4
1,515,644 - PS417_06845 0.14 +0.0
1,515,644 - PS417_06845 0.14 -0.0
1,516,167 - +0.2
1,516,195 - +0.1
1,516,195 - -0.2
1,516,419 - PS417_06850 0.32 -0.7
1,516,611 - PS417_06850 0.58 -0.2
1,516,922 + +0.2
1,517,061 + PS417_06855 0.19 +0.2
1,517,061 + PS417_06855 0.19 -0.1
1,517,061 + PS417_06855 0.19 -0.1
1,517,061 + PS417_06855 0.19 -0.3
1,517,061 + PS417_06855 0.19 +0.2
1,517,062 - PS417_06855 0.19 -0.1
1,517,062 - PS417_06855 0.19 +0.1
1,517,062 - PS417_06855 0.19 +0.0
1,517,118 + PS417_06855 0.28 -0.1
1,517,118 + PS417_06855 0.28 +0.8
1,517,119 - PS417_06855 0.28 +0.1
1,517,119 - PS417_06855 0.28 +0.1
1,517,119 - PS417_06855 0.28 +0.8
1,517,142 + PS417_06855 0.32 -0.2
1,517,142 + PS417_06855 0.32 +0.7
1,517,142 + PS417_06855 0.32 -0.1
1,517,143 - PS417_06855 0.32 +0.1
1,517,143 - PS417_06855 0.32 +0.8
1,517,143 - PS417_06855 0.32 +0.6
1,517,347 - PS417_06855 0.65 +1.3
1,517,579 + -1.3
1,517,579 + +0.0
1,517,579 + -0.4
1,517,580 - -1.3
1,517,580 - +1.0
1,517,603 + -0.2
1,517,603 + +2.5
1,517,604 - -0.6
1,517,604 - +0.1
1,517,604 - -0.5
1,517,644 + -0.1
1,517,806 + +0.8
1,517,807 - -0.1
1,517,894 - PS417_06860 0.17 -0.0

Or see this region's nucleotide sequence