Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06840 and PS417_06845 are separated by 238 nucleotides PS417_06845 and PS417_06850 are separated by 18 nucleotides PS417_06850 and PS417_06855 are separated by 28 nucleotides PS417_06855 and PS417_06860 are separated by 130 nucleotides
PS417_06840: PS417_06840 - beta-D-glucoside glucohydrolase, at 1,513,027 to 1,515,318
_06840
PS417_06845: PS417_06845 - lipoprotein, at 1,515,557 to 1,516,168
_06845
PS417_06850: PS417_06850 - methanol dehydrogenase, at 1,516,187 to 1,516,915
_06850
PS417_06855: PS417_06855 - membrane protein, at 1,516,944 to 1,517,561
_06855
PS417_06860: PS417_06860 - methyltransferase, at 1,517,692 to 1,518,909
_06860
Position (kb)
1516
1517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1515.352 kb on - strand at 1515.352 kb on - strand at 1515.352 kb on - strand at 1515.382 kb on + strand at 1515.383 kb on - strand at 1515.407 kb on + strand at 1515.408 kb on - strand at 1515.453 kb on - strand at 1515.490 kb on - strand at 1515.490 kb on - strand at 1515.509 kb on + strand at 1515.509 kb on + strand at 1515.510 kb on - strand at 1515.510 kb on - strand at 1515.512 kb on - strand at 1515.644 kb on - strand, within PS417_06845 at 1515.644 kb on - strand, within PS417_06845 at 1516.167 kb on - strand at 1516.195 kb on - strand at 1516.195 kb on - strand at 1516.419 kb on - strand, within PS417_06850 at 1516.611 kb on - strand, within PS417_06850 at 1516.922 kb on + strand at 1517.061 kb on + strand, within PS417_06855 at 1517.061 kb on + strand, within PS417_06855 at 1517.061 kb on + strand, within PS417_06855 at 1517.061 kb on + strand, within PS417_06855 at 1517.061 kb on + strand, within PS417_06855 at 1517.062 kb on - strand, within PS417_06855 at 1517.062 kb on - strand, within PS417_06855 at 1517.062 kb on - strand, within PS417_06855 at 1517.118 kb on + strand, within PS417_06855 at 1517.118 kb on + strand, within PS417_06855 at 1517.119 kb on - strand, within PS417_06855 at 1517.119 kb on - strand, within PS417_06855 at 1517.119 kb on - strand, within PS417_06855 at 1517.142 kb on + strand, within PS417_06855 at 1517.142 kb on + strand, within PS417_06855 at 1517.142 kb on + strand, within PS417_06855 at 1517.143 kb on - strand, within PS417_06855 at 1517.143 kb on - strand, within PS417_06855 at 1517.143 kb on - strand, within PS417_06855 at 1517.347 kb on - strand, within PS417_06855 at 1517.579 kb on + strand at 1517.579 kb on + strand at 1517.579 kb on + strand at 1517.580 kb on - strand at 1517.580 kb on - strand at 1517.603 kb on + strand at 1517.603 kb on + strand at 1517.604 kb on - strand at 1517.604 kb on - strand at 1517.604 kb on - strand at 1517.644 kb on + strand at 1517.806 kb on + strand at 1517.807 kb on - strand at 1517.894 kb on - strand, within PS417_06860
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 1,515,352 - -0.3 1,515,352 - +0.2 1,515,352 - +0.4 1,515,382 + +0.9 1,515,383 - -2.3 1,515,407 + -0.4 1,515,408 - +0.6 1,515,453 - +0.3 1,515,490 - +0.7 1,515,490 - -0.3 1,515,509 + -0.6 1,515,509 + -0.1 1,515,510 - -0.1 1,515,510 - -0.1 1,515,512 - +0.4 1,515,644 - PS417_06845 0.14 +0.0 1,515,644 - PS417_06845 0.14 -0.0 1,516,167 - +0.2 1,516,195 - +0.1 1,516,195 - -0.2 1,516,419 - PS417_06850 0.32 -0.7 1,516,611 - PS417_06850 0.58 -0.2 1,516,922 + +0.2 1,517,061 + PS417_06855 0.19 +0.2 1,517,061 + PS417_06855 0.19 -0.1 1,517,061 + PS417_06855 0.19 -0.1 1,517,061 + PS417_06855 0.19 -0.3 1,517,061 + PS417_06855 0.19 +0.2 1,517,062 - PS417_06855 0.19 -0.1 1,517,062 - PS417_06855 0.19 +0.1 1,517,062 - PS417_06855 0.19 +0.0 1,517,118 + PS417_06855 0.28 -0.1 1,517,118 + PS417_06855 0.28 +0.8 1,517,119 - PS417_06855 0.28 +0.1 1,517,119 - PS417_06855 0.28 +0.1 1,517,119 - PS417_06855 0.28 +0.8 1,517,142 + PS417_06855 0.32 -0.2 1,517,142 + PS417_06855 0.32 +0.7 1,517,142 + PS417_06855 0.32 -0.1 1,517,143 - PS417_06855 0.32 +0.1 1,517,143 - PS417_06855 0.32 +0.8 1,517,143 - PS417_06855 0.32 +0.6 1,517,347 - PS417_06855 0.65 +1.3 1,517,579 + -1.3 1,517,579 + +0.0 1,517,579 + -0.4 1,517,580 - -1.3 1,517,580 - +1.0 1,517,603 + -0.2 1,517,603 + +2.5 1,517,604 - -0.6 1,517,604 - +0.1 1,517,604 - -0.5 1,517,644 + -0.1 1,517,806 + +0.8 1,517,807 - -0.1 1,517,894 - PS417_06860 0.17 -0.0
Or see this region's nucleotide sequence