Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06090 and PS417_06095 are separated by 3 nucleotides PS417_06095 and PS417_06100 are separated by 96 nucleotides PS417_06100 and PS417_06105 are separated by 190 nucleotides PS417_06105 and PS417_06110 are separated by 93 nucleotides
PS417_06090: PS417_06090 - extensin, at 1,350,166 to 1,350,840
_06090
PS417_06095: PS417_06095 - energy transducer TonB, at 1,350,844 to 1,351,464
_06095
PS417_06100: PS417_06100 - SAM-dependent methyltransferase, at 1,351,561 to 1,352,343
_06100
PS417_06105: PS417_06105 - TetR family transcriptional regulator, at 1,352,534 to 1,353,169
_06105
PS417_06110: PS417_06110 - RND transporter, at 1,353,263 to 1,354,363
_06110
Position (kb) 1351
1352
1353 Strain fitness (log2 ratio) -1
0
1 at 1350.582 kb on + strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand, within PS417_06090 at 1350.583 kb on - strand at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.586 kb on + strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.587 kb on - strand, within PS417_06090 at 1350.778 kb on + strand at 1351.398 kb on + strand, within PS417_06095 at 1351.399 kb on - strand, within PS417_06095 at 1351.432 kb on + strand at 1351.433 kb on - strand at 1351.496 kb on + strand at 1351.537 kb on + strand at 1351.541 kb on - strand at 1352.090 kb on - strand, within PS417_06100 at 1352.317 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.377 kb on + strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.378 kb on - strand at 1352.385 kb on + strand at 1352.386 kb on - strand at 1352.554 kb on + strand at 1352.555 kb on - strand at 1352.622 kb on + strand, within PS417_06105 at 1352.623 kb on - strand, within PS417_06105 at 1352.623 kb on - strand, within PS417_06105 at 1352.623 kb on - strand, within PS417_06105 at 1352.879 kb on - strand, within PS417_06105 at 1352.925 kb on + strand, within PS417_06105 at 1352.925 kb on + strand, within PS417_06105 at 1352.926 kb on - strand, within PS417_06105 at 1352.926 kb on - strand, within PS417_06105 at 1353.055 kb on + strand, within PS417_06105 at 1353.179 kb on + strand at 1353.205 kb on + strand at 1353.214 kb on - strand at 1353.223 kb on + strand at 1353.235 kb on + strand at 1353.271 kb on + strand at 1353.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 1,350,582 + PS417_06090 0.62 -1.4 1,350,583 - PS417_06090 0.62 +0.1 1,350,583 - PS417_06090 0.62 -0.1 1,350,583 - -1.5 1,350,586 + PS417_06090 0.62 +0.4 1,350,586 + PS417_06090 0.62 +0.1 1,350,586 + PS417_06090 0.62 +1.5 1,350,586 + PS417_06090 0.62 -0.7 1,350,586 + PS417_06090 0.62 +0.8 1,350,587 - PS417_06090 0.62 -0.4 1,350,587 - PS417_06090 0.62 -0.1 1,350,587 - PS417_06090 0.62 -0.5 1,350,587 - PS417_06090 0.62 -0.5 1,350,587 - PS417_06090 0.62 +0.3 1,350,587 - PS417_06090 0.62 -0.1 1,350,587 - PS417_06090 0.62 +0.5 1,350,587 - PS417_06090 0.62 +0.0 1,350,587 - PS417_06090 0.62 -0.5 1,350,778 + -0.6 1,351,398 + PS417_06095 0.89 -0.2 1,351,399 - PS417_06095 0.89 +0.1 1,351,432 + -0.9 1,351,433 - +0.1 1,351,496 + +0.3 1,351,537 + -0.1 1,351,541 - -0.1 1,352,090 - PS417_06100 0.68 -0.7 1,352,317 + -0.1 1,352,377 + -0.3 1,352,377 + -0.4 1,352,377 + -0.2 1,352,377 + -0.4 1,352,377 + +0.3 1,352,378 - -1.0 1,352,378 - +0.3 1,352,378 - -0.9 1,352,378 - -0.1 1,352,378 - -0.5 1,352,378 - +0.3 1,352,378 - +0.2 1,352,385 + +1.1 1,352,386 - -0.1 1,352,554 + +0.2 1,352,555 - +0.3 1,352,622 + PS417_06105 0.14 -1.2 1,352,623 - PS417_06105 0.14 +0.5 1,352,623 - PS417_06105 0.14 -0.6 1,352,623 - PS417_06105 0.14 -0.3 1,352,879 - PS417_06105 0.54 +1.1 1,352,925 + PS417_06105 0.61 -0.1 1,352,925 + PS417_06105 0.61 -0.6 1,352,926 - PS417_06105 0.62 -1.1 1,352,926 - PS417_06105 0.62 -0.2 1,353,055 + PS417_06105 0.82 -0.3 1,353,179 + +0.1 1,353,205 + -0.1 1,353,214 - -0.3 1,353,223 + -0.6 1,353,235 + +0.0 1,353,271 + -0.1 1,353,272 - +0.2
Or see this region's nucleotide sequence