Experiment: A22 0.16 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00580 and PS417_00585 are separated by 12 nucleotides PS417_00585 and PS417_00590 are separated by 412 nucleotides PS417_00590 and PS417_00595 are separated by 284 nucleotides
PS417_00580: PS417_00580 - acyl-CoA dehydrogenase, at 116,133 to 117,314
_00580
PS417_00585: PS417_00585 - CoA-transferase, at 117,327 to 118,547
_00585
PS417_00590: PS417_00590 - 5S ribosomal RNA, at 118,960 to 119,075
_00590
PS417_00595: PS417_00595 - chemotaxis protein, at 119,360 to 121,240
_00595
Position (kb)
117
118
119 Strain fitness (log2 ratio)
-1
0
1 at 116.370 kb on + strand, within PS417_00580 at 116.503 kb on - strand, within PS417_00580 at 116.616 kb on + strand, within PS417_00580 at 116.950 kb on - strand, within PS417_00580 at 116.950 kb on - strand, within PS417_00580 at 116.950 kb on - strand, within PS417_00580 at 117.309 kb on + strand at 117.309 kb on + strand at 117.309 kb on + strand at 117.315 kb on + strand at 117.316 kb on - strand at 117.520 kb on - strand, within PS417_00585 at 117.522 kb on + strand, within PS417_00585 at 117.522 kb on + strand at 117.523 kb on - strand, within PS417_00585 at 117.705 kb on + strand, within PS417_00585 at 117.759 kb on + strand, within PS417_00585 at 118.000 kb on - strand, within PS417_00585 at 118.000 kb on - strand, within PS417_00585 at 118.125 kb on - strand, within PS417_00585 at 118.182 kb on - strand, within PS417_00585 at 118.469 kb on + strand at 118.470 kb on - strand at 118.492 kb on + strand at 118.493 kb on - strand at 118.493 kb on - strand at 118.541 kb on + strand at 118.559 kb on + strand at 118.559 kb on + strand at 118.560 kb on - strand at 118.560 kb on - strand at 118.560 kb on - strand at 118.560 kb on - strand at 118.561 kb on + strand at 118.561 kb on + strand at 118.563 kb on + strand at 118.563 kb on + strand at 118.563 kb on + strand at 118.564 kb on - strand at 118.564 kb on - strand at 118.564 kb on - strand at 118.564 kb on - strand at 118.564 kb on - strand at 118.564 kb on - strand at 118.564 kb on - strand at 118.613 kb on - strand at 118.662 kb on - strand at 118.662 kb on - strand at 118.972 kb on - strand, within PS417_00590 at 118.972 kb on - strand, within PS417_00590 at 119.126 kb on - strand at 119.133 kb on + strand at 119.134 kb on - strand at 119.193 kb on - strand at 119.193 kb on - strand at 119.205 kb on + strand at 119.206 kb on - strand at 119.206 kb on - strand at 119.295 kb on + strand at 119.295 kb on + strand at 119.296 kb on - strand at 119.296 kb on - strand at 119.298 kb on - strand at 119.303 kb on + strand at 119.303 kb on + strand at 119.303 kb on + strand at 119.304 kb on - strand at 119.304 kb on - strand at 119.368 kb on + strand at 119.439 kb on - strand at 119.439 kb on - strand at 119.439 kb on - strand at 119.439 kb on - strand at 119.447 kb on + strand at 119.448 kb on - strand at 119.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.16 mg/ml remove 116,370 + PS417_00580 0.20 +0.2 116,503 - PS417_00580 0.31 -0.4 116,616 + PS417_00580 0.41 -0.4 116,950 - PS417_00580 0.69 -0.6 116,950 - PS417_00580 0.69 +0.4 116,950 - PS417_00580 0.69 +0.0 117,309 + -0.6 117,309 + -0.2 117,309 + +1.0 117,315 + -0.1 117,316 - +1.4 117,520 - PS417_00585 0.16 +0.1 117,522 + PS417_00585 0.16 -0.2 117,522 + +0.5 117,523 - PS417_00585 0.16 -0.1 117,705 + PS417_00585 0.31 -0.2 117,759 + PS417_00585 0.35 +0.1 118,000 - PS417_00585 0.55 -1.0 118,000 - PS417_00585 0.55 -0.9 118,125 - PS417_00585 0.65 -1.0 118,182 - PS417_00585 0.70 -0.6 118,469 + +0.1 118,470 - +0.2 118,492 + -0.5 118,493 - -0.3 118,493 - -0.0 118,541 + -0.2 118,559 + -0.1 118,559 + +0.3 118,560 - -0.2 118,560 - +0.0 118,560 - -0.2 118,560 - -1.2 118,561 + -0.1 118,561 + -0.0 118,563 + +0.4 118,563 + -0.4 118,563 + -0.5 118,564 - -0.2 118,564 - -0.2 118,564 - +0.7 118,564 - -0.1 118,564 - -0.5 118,564 - -0.1 118,564 - -1.2 118,613 - -1.2 118,662 - -0.1 118,662 - -0.1 118,972 - PS417_00590 0.10 -0.4 118,972 - PS417_00590 0.10 +0.0 119,126 - +1.2 119,133 + -0.0 119,134 - +0.0 119,193 - +0.4 119,193 - +0.8 119,205 + -0.9 119,206 - -0.2 119,206 - +0.6 119,295 + +0.0 119,295 + +1.3 119,296 - -0.1 119,296 - -0.2 119,298 - +0.1 119,303 + +0.2 119,303 + +1.0 119,303 + -0.0 119,304 - +0.2 119,304 - +1.7 119,368 + +0.3 119,439 - +0.1 119,439 - -0.2 119,439 - -0.3 119,439 - -0.0 119,447 + +0.2 119,448 - +0.6 119,547 + -0.7
Or see this region's nucleotide sequence